Wall clock time and date at job start Tue Mar 31 2020 06:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47109 * 2 1 4 4 C 1.38862 * 120.00361 * 84.99127 * 3 2 1 5 5 C 1.39563 * 119.83573 * 25.68353 * 4 3 2 6 6 C 1.36340 * 120.15614 * 180.25490 * 5 4 3 7 7 C 1.40894 * 119.83898 * 359.49428 * 6 5 4 8 8 C 1.41135 * 120.15695 * 180.25617 * 7 6 5 9 9 H 1.07993 * 120.00150 * 24.89304 * 8 7 6 10 10 C 1.39863 * 119.99518 * 204.89702 * 8 7 6 11 11 N 1.30901 * 120.00637 * 15.28230 * 10 8 7 12 12 Si 1.86802 * 119.99646 * 195.28040 * 10 8 7 13 13 H 1.48499 * 109.47307 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47141 * 120.00345 * 12 10 8 15 15 H 1.48504 * 109.46941 * 239.99842 * 12 10 8 16 16 C 1.40888 * 119.68299 * 0.48251 * 7 6 5 17 17 C 1.36336 * 119.84023 * 359.77178 * 16 7 6 18 18 S 1.65599 * 119.99802 * 264.99960 * 3 2 1 19 19 O 1.42098 * 106.40180 * 208.82808 * 18 3 2 20 20 O 1.42103 * 106.40414 * 341.74621 * 18 3 2 21 21 C 1.76203 * 107.22144 * 95.28785 * 18 3 2 22 22 C 1.38251 * 119.99672 * 2.45646 * 21 18 3 23 23 C 1.38223 * 119.99716 * 179.79072 * 22 21 18 24 24 C 1.38258 * 119.99998 * 0.46049 * 23 22 21 25 25 C 1.38214 * 119.99618 * 359.77055 * 24 23 22 26 26 C 1.38215 * 120.00168 * 182.73032 * 21 18 3 27 27 N 1.48026 * 119.99700 * 359.97438 * 26 21 18 28 28 O 1.21798 * 119.99664 * 178.74514 * 27 26 21 29 29 O 1.21793 * 120.00206 * 358.74185 * 27 26 21 30 30 H 1.08995 * 109.47474 * 300.00326 * 1 2 3 31 31 H 1.09001 * 109.46574 * 60.00515 * 1 2 3 32 32 H 1.09007 * 109.46995 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47474 * 239.99673 * 2 1 3 34 34 H 1.09000 * 109.47217 * 119.99091 * 2 1 3 35 35 H 1.07996 * 119.92426 * 359.97297 * 5 4 3 36 36 H 1.08003 * 120.08183 * 179.74120 * 6 5 4 37 37 H 0.96999 * 120.00621 * 179.97438 * 11 10 8 38 38 H 1.07998 * 120.08011 * 179.75576 * 16 7 6 39 39 H 1.08002 * 119.92319 * 179.97438 * 17 16 7 40 40 H 1.07995 * 120.00211 * 0.02562 * 22 21 18 41 41 H 1.07996 * 119.99747 * 180.25566 * 23 22 21 42 42 H 1.07990 * 119.99916 * 179.79228 * 24 23 22 43 43 H 1.08000 * 119.99672 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1508 2.0709 1.1979 5 6 2.3500 1.3666 2.3863 6 6 2.4757 2.0368 3.5669 7 6 2.4148 3.4444 3.5838 8 6 2.5495 4.1452 4.8014 9 1 3.0802 3.6955 5.6275 10 6 1.9956 5.4222 4.9381 11 7 1.1108 5.8481 4.0725 12 14 2.5184 6.5200 6.3562 13 1 3.5229 5.8098 7.1879 14 1 3.1136 7.7707 5.8206 15 1 1.3337 6.8523 7.1878 16 6 2.2139 4.1486 2.3802 17 6 2.0846 3.4649 1.2077 18 16 2.4122 2.1201 -1.4287 19 8 3.4206 3.0734 -1.1228 20 8 2.5881 1.0816 -2.3825 21 6 1.0006 3.0383 -1.9476 22 6 -0.1309 3.0738 -1.1540 23 6 -1.2366 3.7976 -1.5590 24 6 -1.2145 4.4783 -2.7622 25 6 -0.0850 4.4388 -3.5577 26 6 1.0226 3.7184 -3.1506 27 7 2.2321 3.6759 -4.0029 28 8 2.2433 4.2564 -5.0736 29 8 3.2161 3.0606 -3.6334 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 2.4001 0.2879 2.3713 36 1 2.6256 1.4904 4.4863 37 1 0.7264 6.7336 4.1675 38 1 2.1622 5.2273 2.3864 39 1 1.9302 4.0034 0.2844 40 1 -0.1494 2.5391 -0.2159 41 1 -2.1190 3.8286 -0.9371 42 1 -2.0796 5.0410 -3.0801 43 1 -0.0675 4.9709 -4.4974 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224751692.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:53 Heat of formation + Delta-G solvation = -6.772324 kcal Electronic energy + Delta-G solvation = -33395.233808 eV Core-core repulsion = 28922.553045 eV Total energy + Delta-G solvation = -4472.680763 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.097 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.48516 -39.68626 -38.58594 -37.04814 -36.92600 -35.95316 -35.52095 -33.44549 -32.45096 -32.00597 -30.91504 -29.55312 -28.63032 -26.89630 -25.02972 -23.88318 -23.57105 -22.62453 -21.28087 -20.62322 -20.00202 -18.96021 -18.62660 -17.86496 -17.80222 -17.48106 -17.09338 -16.58312 -15.81058 -15.56221 -15.30754 -14.96319 -14.77783 -14.28584 -13.81244 -13.76093 -13.63055 -13.18884 -13.16470 -12.78289 -12.60295 -12.38229 -12.29149 -12.03639 -11.86899 -11.79998 -11.71849 -11.66503 -11.47938 -11.32498 -11.24870 -11.20824 -11.01896 -10.96106 -10.79391 -10.72942 -10.11445 -9.94408 -9.89601 -9.75792 -9.40438 -9.14619 -7.74957 -7.14722 -6.84978 -4.41505 -0.59579 0.33504 0.39071 1.05292 1.07661 2.57490 2.78798 2.90173 2.98639 3.02072 3.06650 3.08392 3.74106 3.85467 4.00190 4.20614 4.42448 4.48294 4.56297 4.67962 4.76854 4.93399 5.05557 5.17735 5.24410 5.31671 5.41387 5.51008 5.57873 5.60772 5.79192 5.87684 5.93668 6.07578 6.11263 6.16672 6.22108 6.57155 6.85846 6.95526 7.03369 7.19669 7.34455 7.42214 7.74282 7.83912 7.92363 8.11069 8.47986 8.76863 8.82180 10.07132 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.011303 B = 0.003458 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.694953 B = 8094.603129 C = 8877.739642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.100 3.900 3 N -0.921 5.921 4 C 0.011 3.989 5 C -0.098 4.098 6 C -0.206 4.206 7 C 0.101 3.899 8 C -0.453 4.453 9 H 0.080 0.920 10 C 0.074 3.926 11 N -0.797 5.797 12 Si 0.909 3.091 13 H -0.260 1.260 14 H -0.272 1.272 15 H -0.275 1.275 16 C -0.134 4.134 17 C -0.126 4.126 18 S 2.694 3.306 19 O -0.916 6.916 20 O -0.942 6.942 21 C -0.620 4.620 22 C -0.023 4.023 23 C -0.081 4.081 24 C -0.075 4.075 25 C -0.068 4.068 26 C 0.038 3.962 27 N 0.016 4.984 28 O -0.121 6.121 29 O -0.162 6.162 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.280 0.720 38 H 0.127 0.873 39 H 0.086 0.914 40 H 0.167 0.833 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.373 -4.135 -9.710 14.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.025 4.025 3 N -0.752 5.752 4 C -0.082 4.082 5 C -0.119 4.119 6 C -0.226 4.226 7 C 0.098 3.902 8 C -0.483 4.483 9 H 0.098 0.902 10 C -0.144 4.144 11 N -0.422 5.422 12 Si 0.734 3.266 13 H -0.183 1.183 14 H -0.197 1.197 15 H -0.200 1.200 16 C -0.154 4.154 17 C -0.147 4.147 18 S 2.778 3.222 19 O -0.906 6.906 20 O -0.932 6.932 21 C -0.700 4.700 22 C -0.042 4.042 23 C -0.100 4.100 24 C -0.094 4.094 25 C -0.088 4.088 26 C -0.045 4.045 27 N 0.537 4.463 28 O -0.346 6.346 29 O -0.370 6.370 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.145 0.855 39 H 0.104 0.896 40 H 0.184 0.816 41 H 0.172 0.828 42 H 0.173 0.827 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.341 -4.001 -9.814 14.128 hybrid contribution -0.383 0.965 0.394 1.111 sum -9.724 -3.036 -9.421 13.875 Atomic orbital electron populations 1.22354 0.96373 1.02736 1.02353 1.21539 0.94272 0.81934 1.04740 1.54919 1.78645 1.21415 1.20251 1.16872 1.16557 0.90373 0.84392 1.19995 1.02919 0.97311 0.91706 1.20628 1.11905 0.94286 0.95801 1.17658 0.88708 0.90846 0.93036 1.19593 1.30324 0.99405 0.98953 0.90189 1.25918 0.92877 0.98209 0.97366 1.69817 1.19767 1.18634 1.34007 0.86235 0.79530 0.79924 0.80924 1.18313 1.19661 1.19996 1.20942 1.03906 1.00128 0.90402 1.20251 1.05210 0.91125 0.98115 1.02629 0.73305 0.74067 0.72229 1.93649 1.51196 1.62184 1.83521 1.93559 1.83809 1.56163 1.59680 1.31471 1.22582 1.14795 1.01179 1.21404 0.89839 0.94857 0.98097 1.21844 0.98995 0.93410 0.95735 1.21506 0.97356 0.97085 0.93422 1.21175 0.90583 0.95732 1.01304 1.20478 0.87233 1.04709 0.92060 1.43784 1.02218 0.99020 1.01324 1.94492 1.88849 1.42586 1.08670 1.94559 1.24273 1.41778 1.76359 0.91024 0.93253 0.91040 0.89006 0.88737 0.88406 0.88339 0.90893 0.85515 0.89641 0.81573 0.82815 0.82690 0.82068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 9.05 37.16 0.34 -1.66 16 2 C 0.10 1.37 6.12 -4.04 -0.02 1.34 16 3 N -0.92 -16.14 2.00 -58.50 -0.12 -16.26 16 4 C 0.01 0.22 5.63 -83.69 -0.47 -0.25 16 5 C -0.10 -1.97 9.28 -39.77 -0.37 -2.34 16 6 C -0.21 -4.60 9.74 -39.26 -0.38 -4.99 16 7 C 0.10 2.51 5.58 -106.79 -0.60 1.91 16 8 C -0.45 -11.33 9.05 -37.88 -0.34 -11.67 16 9 H 0.08 1.92 7.89 -52.49 -0.41 1.51 16 10 C 0.07 1.75 5.19 -17.34 -0.09 1.66 16 11 N -0.80 -19.33 10.80 55.54 0.60 -18.73 16 12 Si 0.91 17.88 29.59 -169.99 -5.03 12.85 16 13 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 14 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 15 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 16 C -0.13 -3.32 8.63 -39.26 -0.34 -3.66 16 17 C -0.13 -2.84 7.71 -39.77 -0.31 -3.14 16 18 S 2.69 51.81 3.32 -107.50 -0.36 51.46 16 19 O -0.92 -20.95 14.34 -66.10 -0.95 -21.89 16 20 O -0.94 -18.75 14.86 -66.56 -0.99 -19.74 16 21 C -0.62 -10.04 5.10 -39.58 -0.20 -10.24 16 22 C -0.02 -0.30 7.47 -39.58 -0.30 -0.60 16 23 C -0.08 -0.78 10.05 -39.58 -0.40 -1.17 16 24 C -0.08 -0.62 10.05 -39.58 -0.40 -1.02 16 25 C -0.07 -0.74 9.56 -39.59 -0.38 -1.12 16 26 C 0.04 0.60 6.85 -79.95 -0.55 0.05 16 27 N 0.02 0.29 4.45 33.96 0.15 0.44 16 28 O -0.12 -1.94 18.45 -29.46 -0.54 -2.49 16 29 O -0.16 -3.33 13.75 -39.72 -0.55 -3.88 16 30 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.05 0.52 6.76 -51.93 -0.35 0.17 16 32 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.09 1.19 6.88 -51.93 -0.36 0.83 16 34 H 0.09 1.18 6.00 -51.93 -0.31 0.87 16 35 H 0.10 1.66 6.18 -52.49 -0.32 1.33 16 36 H 0.10 2.05 8.06 -52.48 -0.42 1.62 16 37 H 0.28 6.18 8.30 -40.82 -0.34 5.84 16 38 H 0.13 3.29 6.06 -52.49 -0.32 2.97 16 39 H 0.09 1.85 5.13 -52.49 -0.27 1.58 16 40 H 0.17 2.18 4.99 -52.49 -0.26 1.92 16 41 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.16 0.65 8.06 -52.49 -0.42 0.22 16 43 H 0.16 1.32 7.61 -52.49 -0.40 0.92 16 LS Contribution 364.12 15.07 5.49 5.49 Total: -1.00 -31.84 364.12 -11.35 -43.19 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -4.25 Total: 6.48 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: -4.80 Total: -36.91 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.63 Total: -34.55 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -3.03 Total: -47.99 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: 51.81 SS G_CDS: -0.36 Total: 51.46 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.84 -11.35 -43.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224751692.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.415 kcal (2) G-P(sol) polarization free energy of solvation -31.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds