Wall clock time and date at job start Tue Mar 31 2020 06:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38261 * 119.99461 * 2 1 4 4 C 1.38214 * 119.99497 * 179.76508 * 3 2 1 5 5 C 1.38260 * 120.00267 * 0.48638 * 4 3 2 6 6 S 1.76201 * 120.00038 * 179.76738 * 5 4 3 7 7 O 1.42101 * 106.40060 * 23.56069 * 6 5 4 8 8 O 1.42101 * 106.39834 * 156.47632 * 6 5 4 9 9 N 1.65599 * 107.21857 * 270.01795 * 6 5 4 10 10 C 1.46492 * 119.99930 * 93.86485 * 9 6 5 11 11 C 1.38858 * 119.99646 * 273.86588 * 9 6 5 12 12 C 1.39565 * 119.84362 * 298.24037 * 11 9 6 13 13 C 1.36340 * 120.15934 * 179.71795 * 12 11 9 14 14 C 1.40891 * 119.83599 * 0.55684 * 13 12 11 15 15 C 1.41141 * 120.15308 * 179.69446 * 14 13 12 16 16 H 1.08002 * 119.99339 * 162.52740 * 15 14 13 17 17 C 1.39859 * 120.00084 * 342.53260 * 15 14 13 18 18 N 1.30907 * 119.99944 * 326.04274 * 17 15 14 19 19 Si 1.86802 * 120.00130 * 146.04345 * 17 15 14 20 20 H 1.48502 * 109.46969 * 94.98683 * 19 17 15 21 21 H 1.48500 * 109.47485 * 214.98991 * 19 17 15 22 22 H 1.48506 * 109.46845 * 334.98942 * 19 17 15 23 23 C 1.40885 * 119.68822 * 359.71973 * 14 13 12 24 24 C 1.36338 * 119.83706 * 359.97438 * 23 14 13 25 25 C 1.38212 * 119.99742 * 359.78236 * 5 4 3 26 26 C 1.38210 * 120.00371 * 180.26621 * 2 1 3 27 27 N 1.48022 * 119.99791 * 0.02562 * 26 2 1 28 28 O 1.21801 * 119.99712 * 174.02257 * 27 26 2 29 29 O 1.21795 * 120.00298 * 354.02543 * 27 26 2 30 30 H 1.09004 * 109.46950 * 261.02171 * 1 2 3 31 31 H 1.09003 * 109.46806 * 141.02828 * 1 2 3 32 32 H 1.08997 * 109.47284 * 21.02307 * 1 2 3 33 33 H 1.07998 * 120.00330 * 359.97438 * 3 2 1 34 34 H 1.08004 * 120.00017 * 180.24677 * 4 3 2 35 35 H 1.09005 * 109.46854 * 89.99930 * 10 9 6 36 36 H 1.09001 * 109.47025 * 209.99911 * 10 9 6 37 37 H 1.08997 * 109.47507 * 330.00301 * 10 9 6 38 38 H 1.07996 * 119.92159 * 359.97438 * 12 11 9 39 39 H 1.08002 * 120.08101 * 180.27110 * 13 12 11 40 40 H 0.97007 * 119.99307 * 180.02562 * 18 17 15 41 41 H 1.07995 * 120.07985 * 179.97438 * 23 14 13 42 42 H 1.07998 * 119.91973 * 179.97438 * 24 23 14 43 43 H 1.08001 * 119.99961 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0049 5 6 4.2717 0.0002 -0.0003 6 16 6.0337 0.0003 -0.0003 7 8 6.4348 1.2474 0.5501 8 8 6.4350 -1.2520 0.5383 9 7 6.5240 0.0078 -1.5820 10 6 6.8224 1.2768 -2.2503 11 6 6.6521 -1.1888 -2.2748 12 6 7.5673 -2.1486 -1.8398 13 6 7.6943 -3.3280 -2.5118 14 6 6.9073 -3.5719 -3.6547 15 6 7.0380 -4.7880 -4.3591 16 1 6.2647 -5.1002 -5.0454 17 6 8.1688 -5.5886 -4.1684 18 7 9.3312 -5.0343 -3.9337 19 14 8.0203 -7.4490 -4.2485 20 1 8.3584 -7.9140 -5.6177 21 1 8.9557 -8.0629 -3.2721 22 1 6.6285 -7.8491 -3.9195 23 6 5.9897 -2.5961 -4.0913 24 6 5.8689 -1.4238 -3.4058 25 6 3.5807 -1.1968 -0.0060 26 6 2.1981 -1.1969 -0.0056 27 7 1.4581 -2.4788 -0.0121 28 8 2.0622 -3.5302 -0.1268 29 8 0.2450 -2.4823 0.0972 30 1 -0.3633 -0.1604 1.0151 31 1 -0.3633 -0.7990 -0.6464 32 1 -0.3634 0.9592 -0.3687 33 1 1.6582 2.1327 -0.0004 34 1 4.1203 2.1328 0.0089 35 1 7.8758 1.5208 -2.1128 36 1 6.6063 1.1863 -3.3149 37 1 6.2073 2.0673 -1.8205 38 1 8.1734 -1.9582 -0.9665 39 1 8.3998 -4.0716 -2.1715 40 1 10.1155 -5.5897 -3.8018 41 1 5.3836 -2.7763 -4.9667 42 1 5.1662 -0.6746 -3.7396 43 1 4.1207 -2.1321 -0.0105 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224779502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:12 Heat of formation + Delta-G solvation = -18.505267 kcal Electronic energy + Delta-G solvation = -32344.096605 eV Core-core repulsion = 27870.907064 eV Total energy + Delta-G solvation = -4473.189541 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.097 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.31768 -39.75712 -38.23877 -37.08142 -36.70329 -35.66926 -35.51624 -33.56932 -33.41286 -32.21768 -29.79567 -29.32014 -28.27260 -26.51169 -26.29936 -24.43058 -23.06196 -22.60340 -21.13488 -21.07599 -19.89885 -18.73020 -18.36542 -17.66256 -17.54319 -17.23913 -17.09529 -16.46571 -15.92163 -15.79646 -15.33756 -14.60902 -14.54275 -14.33377 -14.12766 -14.01436 -13.12280 -13.06136 -12.97693 -12.87905 -12.75180 -12.54372 -12.49954 -12.30698 -12.24953 -11.90014 -11.84801 -11.56089 -11.41980 -11.27741 -11.22424 -11.10442 -11.08411 -10.98019 -10.77784 -10.72177 -10.05573 -10.01844 -9.78311 -9.69495 -9.11247 -8.88821 -7.69681 -7.49788 -7.10751 -4.47419 -0.33859 0.22574 0.53158 1.15249 1.29845 2.55845 2.68437 2.95995 2.98980 3.01404 3.12758 3.21854 3.76957 3.83749 3.93897 4.03850 4.24108 4.28974 4.43240 4.63076 4.86494 4.98156 5.11376 5.16834 5.18476 5.28176 5.46554 5.50477 5.55506 5.68926 5.70729 5.88991 5.91745 6.05372 6.19381 6.27609 6.37933 6.68479 6.81602 6.93939 7.07272 7.16808 7.42865 7.61306 7.80669 7.87867 7.96683 8.06855 8.41328 8.65452 8.79732 9.79674 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.009348 B = 0.003463 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2994.438519 B = 8082.741254 C =10056.901091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.026 3.974 3 C -0.147 4.147 4 C 0.026 3.974 5 C -0.680 4.680 6 S 2.662 3.338 7 O -0.966 6.966 8 O -0.935 6.935 9 N -0.905 5.905 10 C 0.096 3.904 11 C -0.052 4.052 12 C -0.060 4.060 13 C -0.181 4.181 14 C 0.120 3.880 15 C -0.444 4.444 16 H 0.087 0.913 17 C 0.086 3.914 18 N -0.750 5.750 19 Si 0.900 3.100 20 H -0.268 1.268 21 H -0.271 1.271 22 H -0.253 1.253 23 C -0.230 4.230 24 C -0.065 4.065 25 C 0.060 3.940 26 C -0.070 4.070 27 N 0.032 4.968 28 O -0.148 6.148 29 O -0.164 6.164 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.113 0.887 40 H 0.288 0.712 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.520 11.884 4.924 16.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.025 3.975 3 C -0.166 4.166 4 C 0.007 3.993 5 C -0.762 4.762 6 S 2.753 3.247 7 O -0.956 6.956 8 O -0.925 6.925 9 N -0.737 5.737 10 C -0.050 4.050 11 C -0.147 4.147 12 C -0.081 4.081 13 C -0.201 4.201 14 C 0.116 3.884 15 C -0.471 4.471 16 H 0.105 0.895 17 C -0.139 4.139 18 N -0.371 5.371 19 Si 0.723 3.277 20 H -0.193 1.193 21 H -0.196 1.196 22 H -0.177 1.177 23 C -0.251 4.251 24 C -0.087 4.087 25 C 0.040 3.960 26 C -0.154 4.154 27 N 0.550 4.450 28 O -0.365 6.365 29 O -0.376 6.376 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.171 0.829 34 H 0.174 0.826 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.131 0.869 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -9.460 12.590 5.777 16.774 hybrid contribution -0.810 -1.052 -0.410 1.390 sum -10.270 11.538 5.367 16.353 Atomic orbital electron populations 1.21395 0.88098 1.04745 1.05028 1.20152 0.98241 0.90660 0.88474 1.21249 0.94120 0.97335 1.03936 1.21366 0.94626 0.97437 0.85847 1.31766 1.30209 0.97465 1.16741 1.03821 0.73215 0.73685 0.73945 1.93531 1.80577 1.44437 1.77025 1.93615 1.79592 1.42814 1.76490 1.54142 1.77726 1.11095 1.30709 1.21570 1.01089 0.83270 0.99026 1.16563 1.08021 0.88097 1.02065 1.20548 0.95132 0.94358 0.98034 1.20742 1.04619 0.97427 0.97315 1.17650 0.89395 0.91008 0.90299 1.19689 1.03443 1.02604 1.21369 0.89539 1.26073 0.94168 1.02054 0.91618 1.69957 0.99591 1.39374 1.28183 0.86417 0.80475 0.81678 0.79135 1.19266 1.19558 1.17676 1.20489 1.06830 0.95121 1.02651 1.20281 0.96749 0.96498 0.95158 1.20864 0.91266 0.99886 0.84006 1.21055 0.92611 0.83845 1.17935 1.43463 1.01015 1.02679 0.97828 1.94640 1.70001 1.19349 1.52522 1.94437 0.96182 1.93691 1.53339 0.88793 0.87970 0.90428 0.82891 0.82634 0.92222 0.90712 0.91977 0.88470 0.86933 0.90052 0.88658 0.89416 0.81053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.62 36.01 0.31 -0.81 16 2 C 0.03 0.29 5.88 -104.62 -0.62 -0.33 16 3 C -0.15 -1.32 9.67 -39.58 -0.38 -1.70 16 4 C 0.03 0.28 9.52 -39.58 -0.38 -0.10 16 5 C -0.68 -9.53 5.97 -39.58 -0.24 -9.77 16 6 S 2.66 43.82 5.60 -107.50 -0.60 43.22 16 7 O -0.97 -16.02 16.23 -57.17 -0.93 -16.95 16 8 O -0.94 -18.52 14.87 -57.17 -0.85 -19.37 16 9 N -0.90 -15.27 3.20 -65.26 -0.21 -15.48 16 10 C 0.10 1.27 10.22 59.84 0.61 1.88 16 11 C -0.05 -1.06 5.31 -83.69 -0.44 -1.50 16 12 C -0.06 -1.37 8.62 -39.77 -0.34 -1.71 16 13 C -0.18 -4.50 8.77 -39.26 -0.34 -4.84 16 14 C 0.12 3.00 5.62 -106.79 -0.60 2.40 16 15 C -0.44 -10.97 8.94 -37.87 -0.34 -11.31 16 16 H 0.09 2.05 8.03 -52.49 -0.42 1.62 16 17 C 0.09 2.00 4.78 -17.34 -0.08 1.91 16 18 N -0.75 -17.92 11.58 55.54 0.64 -17.27 16 19 Si 0.90 17.34 29.67 -169.99 -5.04 12.30 16 20 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 21 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.25 -4.95 7.11 56.52 0.40 -4.54 16 23 C -0.23 -5.24 9.74 -39.27 -0.38 -5.62 16 24 C -0.07 -1.34 9.33 -39.77 -0.37 -1.71 16 25 C 0.06 0.91 9.03 -39.58 -0.36 0.56 16 26 C -0.07 -1.00 6.83 -79.95 -0.55 -1.54 16 27 N 0.03 0.50 4.45 33.96 0.15 0.65 16 28 O -0.15 -2.63 18.46 -29.46 -0.54 -3.17 16 29 O -0.16 -2.39 15.39 -29.46 -0.45 -2.84 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 0.97 5.99 -51.93 -0.31 0.66 16 32 H 0.08 0.43 8.02 -51.93 -0.42 0.01 16 33 H 0.15 0.78 8.04 -52.49 -0.42 0.36 16 34 H 0.16 1.27 7.62 -52.48 -0.40 0.87 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.94 7.63 -51.93 -0.40 0.54 16 37 H 0.06 0.64 7.69 -51.93 -0.40 0.24 16 38 H 0.10 2.17 7.33 -52.49 -0.38 1.78 16 39 H 0.11 2.88 6.27 -52.49 -0.33 2.55 16 40 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 41 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 42 H 0.09 1.56 8.05 -52.49 -0.42 1.13 16 43 H 0.17 2.85 7.18 -52.49 -0.38 2.47 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -29.68 382.10 -11.26 -40.94 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -4.68 Total: 6.43 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: -4.50 Total: -34.20 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.59 Total: -32.10 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -2.78 Total: -42.33 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.04 Total: 12.30 kcal Atomic # 16 Polarization: 43.82 SS G_CDS: -0.60 Total: 43.22 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.68 -11.26 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224779502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.435 kcal (2) G-P(sol) polarization free energy of solvation -29.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds