Wall clock time and date at job start Tue Mar 31 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38261 * 119.99461 * 2 1 4 4 C 1.38214 * 119.99497 * 179.76508 * 3 2 1 5 5 C 1.38260 * 120.00267 * 0.48638 * 4 3 2 6 6 S 1.76201 * 120.00038 * 179.76738 * 5 4 3 7 7 O 1.42101 * 106.40060 * 23.56069 * 6 5 4 8 8 O 1.42101 * 106.39834 * 156.47632 * 6 5 4 9 9 N 1.65599 * 107.21857 * 270.01795 * 6 5 4 10 10 C 1.46492 * 119.99930 * 93.86485 * 9 6 5 11 11 C 1.38858 * 119.99646 * 273.86588 * 9 6 5 12 12 C 1.39565 * 119.84362 * 298.24037 * 11 9 6 13 13 C 1.36340 * 120.15934 * 179.71795 * 12 11 9 14 14 C 1.40891 * 119.83599 * 0.55684 * 13 12 11 15 15 C 1.41141 * 120.15308 * 179.69446 * 14 13 12 16 16 H 1.08002 * 119.99339 * 162.52740 * 15 14 13 17 17 C 1.39859 * 120.00084 * 342.53260 * 15 14 13 18 18 N 1.30907 * 119.99944 * 326.04274 * 17 15 14 19 19 Si 1.86802 * 120.00130 * 146.04345 * 17 15 14 20 20 H 1.48502 * 109.46969 * 94.98683 * 19 17 15 21 21 H 1.48500 * 109.47485 * 214.98991 * 19 17 15 22 22 H 1.48506 * 109.46845 * 334.98942 * 19 17 15 23 23 C 1.40885 * 119.68822 * 359.71973 * 14 13 12 24 24 C 1.36338 * 119.83706 * 359.97438 * 23 14 13 25 25 C 1.38212 * 119.99742 * 359.78236 * 5 4 3 26 26 C 1.38210 * 120.00371 * 180.26621 * 2 1 3 27 27 N 1.48022 * 119.99791 * 0.02562 * 26 2 1 28 28 O 1.21801 * 119.99712 * 174.02257 * 27 26 2 29 29 O 1.21795 * 120.00298 * 354.02543 * 27 26 2 30 30 H 1.09004 * 109.46950 * 261.02171 * 1 2 3 31 31 H 1.09003 * 109.46806 * 141.02828 * 1 2 3 32 32 H 1.08997 * 109.47284 * 21.02307 * 1 2 3 33 33 H 1.07998 * 120.00330 * 359.97438 * 3 2 1 34 34 H 1.08004 * 120.00017 * 180.24677 * 4 3 2 35 35 H 1.09005 * 109.46854 * 89.99930 * 10 9 6 36 36 H 1.09001 * 109.47025 * 209.99911 * 10 9 6 37 37 H 1.08997 * 109.47507 * 330.00301 * 10 9 6 38 38 H 1.07996 * 119.92159 * 359.97438 * 12 11 9 39 39 H 1.08002 * 120.08101 * 180.27110 * 13 12 11 40 40 H 0.97007 * 119.99307 * 180.02562 * 18 17 15 41 41 H 1.07995 * 120.07985 * 179.97438 * 23 14 13 42 42 H 1.07998 * 119.91973 * 179.97438 * 24 23 14 43 43 H 1.08001 * 119.99961 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0049 5 6 4.2717 0.0002 -0.0003 6 16 6.0337 0.0003 -0.0003 7 8 6.4348 1.2474 0.5501 8 8 6.4350 -1.2520 0.5383 9 7 6.5240 0.0078 -1.5820 10 6 6.8224 1.2768 -2.2503 11 6 6.6521 -1.1888 -2.2748 12 6 7.5673 -2.1486 -1.8398 13 6 7.6943 -3.3280 -2.5118 14 6 6.9073 -3.5719 -3.6547 15 6 7.0380 -4.7880 -4.3591 16 1 6.2647 -5.1002 -5.0454 17 6 8.1688 -5.5886 -4.1684 18 7 9.3312 -5.0343 -3.9337 19 14 8.0203 -7.4490 -4.2485 20 1 8.3584 -7.9140 -5.6177 21 1 8.9557 -8.0629 -3.2721 22 1 6.6285 -7.8491 -3.9195 23 6 5.9897 -2.5961 -4.0913 24 6 5.8689 -1.4238 -3.4058 25 6 3.5807 -1.1968 -0.0060 26 6 2.1981 -1.1969 -0.0056 27 7 1.4581 -2.4788 -0.0121 28 8 2.0622 -3.5302 -0.1268 29 8 0.2450 -2.4823 0.0972 30 1 -0.3633 -0.1604 1.0151 31 1 -0.3633 -0.7990 -0.6464 32 1 -0.3634 0.9592 -0.3687 33 1 1.6582 2.1327 -0.0004 34 1 4.1203 2.1328 0.0089 35 1 7.8758 1.5208 -2.1128 36 1 6.6063 1.1863 -3.3149 37 1 6.2073 2.0673 -1.8205 38 1 8.1734 -1.9582 -0.9665 39 1 8.3998 -4.0716 -2.1715 40 1 10.1155 -5.5897 -3.8018 41 1 5.3836 -2.7763 -4.9667 42 1 5.1662 -0.6746 -3.7396 43 1 4.1207 -2.1321 -0.0105 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224779502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:11 Heat of formation + Delta-G solvation = -35.072167 kcal Electronic energy + Delta-G solvation = -32344.815000 eV Core-core repulsion = 27870.907064 eV Total energy + Delta-G solvation = -4473.907936 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.097 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.48763 -40.72230 -39.93188 -38.49102 -37.89970 -37.13734 -37.04888 -35.10074 -34.47773 -33.18139 -31.57070 -31.04388 -29.15173 -27.92340 -27.35750 -26.00785 -24.03517 -23.61178 -22.91768 -22.74577 -21.09231 -19.92010 -19.73821 -19.34232 -18.85515 -18.64939 -18.20082 -17.75378 -17.22061 -16.90360 -16.76568 -16.02753 -15.76962 -15.66472 -15.31346 -15.12257 -14.64004 -14.36967 -14.04926 -13.95473 -13.93929 -13.86972 -13.67214 -13.58604 -13.56394 -13.36397 -13.24692 -13.02810 -12.95094 -12.75298 -12.60983 -12.54180 -12.40312 -12.31111 -12.23074 -11.84405 -11.76797 -11.47095 -11.00605 -10.88710 -10.59041 -10.38307 -9.51564 -9.24536 -8.84693 -6.32286 -1.38957 -0.94754 -0.64075 0.09150 0.20708 0.84915 1.14987 1.35372 1.44962 1.55796 1.65910 2.00144 2.14448 2.52367 2.55197 2.97440 3.09707 3.30880 3.55098 3.61096 3.62832 3.82397 4.09756 4.19926 4.23593 4.39691 4.42257 4.49641 4.56430 4.61379 4.64765 4.80502 4.88168 4.93503 4.94450 5.05135 5.06362 5.06825 5.24429 5.27795 5.38213 5.45398 5.61628 5.99752 6.06731 6.15645 6.29918 6.38488 6.60091 6.82589 6.98308 8.09398 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.009348 B = 0.003463 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2994.438519 B = 8082.741254 C =10056.901091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.035 3.965 3 C -0.122 4.122 4 C 0.034 3.966 5 C -0.686 4.686 6 S 2.684 3.316 7 O -0.961 6.961 8 O -0.981 6.981 9 N -0.915 5.915 10 C 0.081 3.919 11 C -0.029 4.029 12 C -0.075 4.075 13 C -0.207 4.207 14 C 0.092 3.908 15 C -0.487 4.487 16 H 0.085 0.915 17 C 0.050 3.950 18 N -0.785 5.785 19 Si 0.969 3.031 20 H -0.253 1.253 21 H -0.264 1.264 22 H -0.260 1.260 23 C -0.246 4.246 24 C -0.061 4.061 25 C 0.036 3.964 26 C -0.089 4.089 27 N 0.032 4.968 28 O -0.240 6.240 29 O -0.110 6.110 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.211 0.789 34 H 0.192 0.808 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.296 0.704 41 H 0.104 0.896 42 H 0.125 0.875 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.733 16.299 5.309 21.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.033 3.967 3 C -0.140 4.140 4 C 0.015 3.985 5 C -0.773 4.773 6 S 2.778 3.222 7 O -0.952 6.952 8 O -0.972 6.972 9 N -0.747 5.747 10 C -0.063 4.063 11 C -0.124 4.124 12 C -0.096 4.096 13 C -0.227 4.227 14 C 0.089 3.911 15 C -0.514 4.514 16 H 0.103 0.897 17 C -0.171 4.171 18 N -0.407 5.407 19 Si 0.789 3.211 20 H -0.177 1.177 21 H -0.189 1.189 22 H -0.184 1.184 23 C -0.266 4.266 24 C -0.082 4.082 25 C 0.016 3.984 26 C -0.173 4.173 27 N 0.546 4.454 28 O -0.435 6.435 29 O -0.341 6.341 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.137 0.863 33 H 0.228 0.772 34 H 0.209 0.791 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.143 0.857 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.437 16.875 6.093 21.831 hybrid contribution -0.130 -1.959 -0.326 1.990 sum -12.566 14.917 5.767 20.339 Atomic orbital electron populations 1.21548 0.85692 1.06643 1.05543 1.20716 0.99940 0.89660 0.86353 1.21886 0.93279 0.98451 1.00421 1.21899 0.95856 0.96935 0.83815 1.31164 1.27911 0.98644 1.19532 1.02478 0.73955 0.72716 0.73036 1.93535 1.81278 1.43766 1.76593 1.93576 1.81236 1.45010 1.77328 1.54171 1.78962 1.11066 1.30538 1.21923 1.02262 0.82309 0.99788 1.16503 1.05875 0.88488 1.01522 1.20702 0.96107 0.94828 0.97992 1.20680 1.05521 0.98138 0.98409 1.17947 0.90411 0.92072 0.90656 1.19885 1.04518 1.03943 1.23060 0.89696 1.26828 0.93364 1.06133 0.90803 1.69966 1.00331 1.41128 1.29299 0.85391 0.79898 0.76031 0.79777 1.17720 1.18879 1.18383 1.20718 1.06819 0.95670 1.03393 1.20554 0.96763 0.96422 0.94467 1.20643 0.92242 0.99345 0.86187 1.21235 0.92269 0.83876 1.19958 1.43753 1.01086 1.03204 0.97318 1.94675 1.70361 1.20735 1.57684 1.94371 0.96311 1.93800 1.49591 0.87541 0.89426 0.86257 0.77183 0.79131 0.92081 0.89752 0.88068 0.88759 0.88916 0.89248 0.87750 0.85708 0.84432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.62 71.24 0.61 -0.88 16 2 C 0.03 0.60 5.88 -19.87 -0.12 0.48 16 3 C -0.12 -1.35 9.67 22.27 0.22 -1.13 16 4 C 0.03 0.54 9.52 22.27 0.21 0.75 16 5 C -0.69 -17.85 5.97 22.27 0.13 -17.72 16 6 S 2.68 85.99 5.60 -56.49 -0.32 85.67 16 7 O -0.96 -29.29 16.23 -128.00 -2.08 -31.36 16 8 O -0.98 -40.71 14.87 -128.00 -1.90 -42.61 16 9 N -0.92 -29.83 3.20 -360.39 -1.15 -30.98 16 10 C 0.08 1.90 10.22 127.77 1.31 3.21 16 11 C -0.03 -1.19 5.31 38.67 0.21 -0.99 16 12 C -0.08 -3.67 8.62 22.15 0.19 -3.48 16 13 C -0.21 -11.17 8.77 22.48 0.20 -10.97 16 14 C 0.09 4.94 5.62 -21.27 -0.12 4.82 16 15 C -0.49 -25.81 8.94 23.38 0.21 -25.60 16 16 H 0.09 4.32 8.03 -2.91 -0.02 4.29 16 17 C 0.05 2.49 4.78 85.22 0.41 2.89 16 18 N -0.79 -39.95 11.58 21.81 0.25 -39.70 16 19 Si 0.97 37.42 29.67 68.60 2.04 39.46 16 20 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 21 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 22 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 23 C -0.25 -11.62 9.74 22.47 0.22 -11.40 16 24 C -0.06 -2.50 9.33 22.15 0.21 -2.29 16 25 C 0.04 1.13 9.03 22.27 0.20 1.33 16 26 C -0.09 -2.42 6.83 36.37 0.25 -2.17 16 27 N 0.03 1.03 4.45 -46.46 -0.21 0.82 16 28 O -0.24 -9.37 18.46 18.88 0.35 -9.02 16 29 O -0.11 -3.05 15.39 18.89 0.29 -2.76 16 30 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 1.28 5.99 -2.39 -0.01 1.27 16 32 H 0.12 0.38 8.02 -2.39 -0.02 0.36 16 33 H 0.21 0.06 8.04 -2.91 -0.02 0.04 16 34 H 0.19 1.74 7.62 -2.91 -0.02 1.71 16 35 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.08 1.85 7.63 -2.39 -0.02 1.83 16 37 H 0.10 1.59 7.69 -2.39 -0.02 1.57 16 38 H 0.09 4.53 7.33 -2.91 -0.02 4.51 16 39 H 0.09 5.22 6.27 -2.91 -0.02 5.20 16 40 H 0.30 13.44 8.30 -92.70 -0.77 12.67 16 41 H 0.10 4.61 8.06 -2.91 -0.02 4.59 16 42 H 0.13 4.14 8.05 -2.91 -0.02 4.12 16 43 H 0.14 5.14 7.18 -2.91 -0.02 5.12 16 Total: -1.00 -73.64 382.10 2.66 -70.98 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 1.07 Total: 22.68 kcal Atomic # 6 Polarization: -67.49 SS G_CDS: 4.33 Total: -63.16 kcal Atomic # 7 Polarization: -68.75 SS G_CDS: -1.11 Total: -69.86 kcal Atomic # 8 Polarization: -82.42 SS G_CDS: -3.34 Total: -85.76 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.04 Total: 39.46 kcal Atomic # 16 Polarization: 85.99 SS G_CDS: -0.32 Total: 85.67 kcal Total: -73.64 2.66 -70.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224779502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.905 kcal (2) G-P(sol) polarization free energy of solvation -73.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds