Wall clock time and date at job start Tue Mar 31 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47384 * 2 1 4 4 C 1.38859 * 119.99739 * 274.99511 * 3 2 1 5 5 C 1.39573 * 119.83861 * 118.57922 * 4 3 2 6 6 C 1.36339 * 120.15735 * 179.71896 * 5 4 3 7 7 C 1.40883 * 119.83785 * 0.55413 * 6 5 4 8 8 C 1.41141 * 120.15710 * 179.69960 * 7 6 5 9 9 H 1.07994 * 119.99758 * 209.35194 * 8 7 6 10 10 C 1.39867 * 119.99914 * 29.34678 * 8 7 6 11 11 N 1.30904 * 119.99798 * 11.79761 * 10 8 7 12 12 Si 1.86794 * 119.99854 * 191.80133 * 10 8 7 13 13 H 1.48495 * 109.47452 * 60.00009 * 12 10 8 14 14 H 1.48501 * 109.47077 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47150 * 299.99594 * 12 10 8 16 16 C 1.40888 * 119.68909 * 359.72048 * 7 6 5 17 17 C 1.36344 * 119.83677 * 359.97438 * 16 7 6 18 18 S 1.65598 * 120.00448 * 95.00072 * 3 2 1 19 19 O 1.42099 * 106.40525 * 153.86436 * 18 3 2 20 20 O 1.42099 * 106.39944 * 20.93991 * 18 3 2 21 21 C 1.76199 * 107.21651 * 267.40603 * 18 3 2 22 22 C 1.38239 * 120.00170 * 85.21878 * 21 18 3 23 23 C 1.38230 * 119.99713 * 180.02562 * 22 21 18 24 24 C 1.38239 * 120.00494 * 359.97438 * 23 22 21 25 25 N 1.48018 * 120.00229 * 179.97438 * 24 23 22 26 26 O 1.21806 * 119.99860 * 359.97438 * 25 24 23 27 27 O 1.21797 * 120.00405 * 179.72772 * 25 24 23 28 28 C 1.38237 * 119.99716 * 0.25768 * 24 23 22 29 29 C 1.38232 * 119.99779 * 359.48719 * 28 24 23 30 30 H 1.08998 * 109.46991 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46803 * 300.00307 * 1 2 3 32 32 H 1.09002 * 109.46682 * 60.00227 * 1 2 3 33 33 H 1.09004 * 109.47256 * 239.99526 * 2 1 3 34 34 H 1.09007 * 109.47115 * 119.99903 * 2 1 3 35 35 H 1.07999 * 119.91897 * 359.97438 * 5 4 3 36 36 H 1.07999 * 120.07892 * 180.27625 * 6 5 4 37 37 H 0.97001 * 119.99857 * 179.97438 * 11 10 8 38 38 H 1.08000 * 120.08369 * 179.97438 * 16 7 6 39 39 H 1.08002 * 119.91868 * 179.97438 * 17 16 7 40 40 H 1.07997 * 119.99751 * 359.97438 * 22 21 18 41 41 H 1.08008 * 119.99727 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.99541 * 179.72945 * 28 24 23 43 43 H 1.08004 * 119.99912 * 180.23362 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1511 2.0706 -1.1980 5 6 1.4099 3.2330 -1.4161 6 6 1.5394 3.9182 -2.5877 7 6 2.4153 3.4438 -3.5840 8 6 2.5498 4.1443 -4.8019 9 1 2.8021 3.6111 -5.7065 10 6 2.3563 5.5291 -4.8372 11 7 2.2802 6.2080 -3.7206 12 14 2.2062 6.4096 -6.4778 13 1 1.0452 5.8659 -7.2271 14 1 2.0083 7.8626 -6.2434 15 1 3.4466 6.2006 -7.2670 16 6 3.1559 2.2666 -3.3592 17 6 3.0211 1.5951 -2.1803 18 16 2.4123 2.1202 1.4286 19 8 3.3747 3.1168 1.1128 20 8 2.6501 1.0795 2.3665 21 6 0.9761 2.9746 1.9871 22 6 0.0169 2.3058 2.7243 23 6 -1.1101 2.9761 3.1620 24 6 -1.2776 4.3153 2.8630 25 7 -2.4846 5.0328 3.3312 26 8 -3.3305 4.4431 3.9796 27 8 -2.6299 6.2140 3.0720 28 6 -0.3207 4.9829 2.1217 29 6 0.8088 4.3140 1.6885 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.7353 3.5927 -0.6534 36 1 0.9686 4.8199 -2.7534 37 1 2.1463 7.1684 -3.7451 38 1 3.8289 1.8970 -4.1187 39 1 3.5879 0.6923 -2.0067 40 1 0.1475 1.2594 2.9575 41 1 -1.8598 2.4534 3.7376 42 1 -0.4537 6.0281 1.8844 43 1 1.5583 4.8365 1.1126 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225029920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:04 Heat of formation + Delta-G solvation = -20.179884 kcal Electronic energy + Delta-G solvation = -32341.188639 eV Core-core repulsion = 27867.926481 eV Total energy + Delta-G solvation = -4473.262158 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.097 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.45427 -39.67994 -38.47292 -37.29082 -36.83069 -35.95857 -35.79211 -33.51789 -32.58567 -31.83768 -30.80234 -29.73042 -28.62895 -27.08147 -25.06528 -23.63119 -23.17911 -22.83295 -21.27453 -20.93903 -19.69713 -19.13895 -18.92937 -18.14067 -17.80277 -17.52969 -17.23731 -16.56714 -15.83380 -15.46017 -15.32801 -14.68959 -14.40128 -14.32640 -14.16293 -13.91203 -13.79253 -13.70652 -13.12976 -12.80954 -12.49999 -12.31421 -12.13266 -12.08685 -11.95434 -11.88785 -11.81328 -11.73189 -11.56958 -11.49689 -11.37976 -11.26934 -11.19598 -11.02051 -10.82780 -10.60746 -10.31674 -10.14423 -9.92310 -9.71752 -9.42006 -8.88572 -7.82199 -7.35640 -6.92186 -4.54429 -0.71335 0.32861 0.56515 0.87805 1.06495 2.46988 2.64182 2.85882 2.98068 2.99480 3.02531 3.07111 3.72275 3.80212 3.89026 4.09200 4.19045 4.39753 4.57403 4.77622 4.85261 4.96645 5.09123 5.26460 5.27625 5.29596 5.32638 5.45043 5.50111 5.62128 5.85845 5.87029 5.89467 6.06197 6.13006 6.15550 6.27504 6.56061 6.81087 6.88457 6.98966 7.10383 7.35907 7.36720 7.71663 7.77025 7.85262 8.04906 8.40001 8.67499 8.73641 10.02098 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.008425 B = 0.003480 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3322.816725 B = 8044.731827 C =10285.739240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.108 3.892 3 N -0.912 5.912 4 C -0.006 4.006 5 C -0.108 4.108 6 C -0.146 4.146 7 C 0.116 3.884 8 C -0.454 4.454 9 H 0.081 0.919 10 C 0.073 3.927 11 N -0.791 5.791 12 Si 0.913 3.087 13 H -0.263 1.263 14 H -0.277 1.277 15 H -0.264 1.264 16 C -0.212 4.212 17 C -0.073 4.073 18 S 2.675 3.325 19 O -0.928 6.928 20 O -0.960 6.960 21 C -0.630 4.630 22 C -0.021 4.021 23 C -0.080 4.080 24 C 0.001 3.999 25 N 0.022 4.978 26 O -0.154 6.154 27 O -0.148 6.148 28 C -0.073 4.073 29 C -0.011 4.011 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.122 0.878 37 H 0.284 0.716 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.164 0.836 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.030 -6.594 9.221 12.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.016 4.016 3 N -0.744 5.744 4 C -0.100 4.100 5 C -0.129 4.129 6 C -0.166 4.166 7 C 0.113 3.887 8 C -0.483 4.483 9 H 0.099 0.901 10 C -0.145 4.145 11 N -0.416 5.416 12 Si 0.737 3.263 13 H -0.188 1.188 14 H -0.202 1.202 15 H -0.189 1.189 16 C -0.232 4.232 17 C -0.095 4.095 18 S 2.764 3.236 19 O -0.918 6.918 20 O -0.950 6.950 21 C -0.712 4.712 22 C -0.041 4.041 23 C -0.100 4.100 24 C -0.082 4.082 25 N 0.544 4.456 26 O -0.371 6.371 27 O -0.366 6.366 28 C -0.093 4.093 29 C -0.030 4.030 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.140 0.860 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.178 0.822 41 H 0.178 0.822 42 H 0.182 0.818 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.702 -6.735 9.595 12.294 hybrid contribution -1.240 1.028 -0.553 1.703 sum -4.942 -5.707 9.042 11.779 Atomic orbital electron populations 1.22268 0.96405 1.02128 1.02550 1.21528 0.94154 0.81838 1.04103 1.54396 1.79799 1.21067 1.19143 1.16594 1.07231 0.98327 0.87857 1.20509 0.98314 0.96090 0.97996 1.20918 1.00799 1.01012 0.93839 1.17692 0.88055 0.90244 0.92693 1.19590 1.40997 0.92127 0.95574 0.90138 1.25945 0.92209 0.98109 0.98257 1.69800 1.34216 1.09313 1.28233 0.86277 0.80049 0.78156 0.81791 1.18773 1.20195 1.18875 1.20712 1.04392 1.00592 0.97510 1.20282 0.96339 0.98684 0.94166 1.02993 0.73835 0.73785 0.72982 1.93638 1.55011 1.59984 1.83147 1.93550 1.83767 1.55923 1.61808 1.32024 1.22646 1.07085 1.09452 1.20950 0.90337 1.00614 0.92194 1.21130 0.98890 0.91439 0.98512 1.21427 0.88253 0.93908 1.04565 1.43678 1.01892 1.01169 0.98880 1.94541 1.36736 1.69069 1.36739 1.94570 1.83234 0.98663 1.60166 1.21263 0.91688 1.02324 0.94007 1.21214 0.96077 0.92104 0.93611 0.91489 0.93431 0.91303 0.89375 0.89443 0.89720 0.86004 0.90508 0.88290 0.88768 0.82178 0.82174 0.81837 0.81156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 10.22 37.16 0.38 -1.50 16 2 C 0.11 1.34 6.30 -4.04 -0.03 1.32 16 3 N -0.91 -14.31 2.81 -58.50 -0.16 -14.47 16 4 C -0.01 -0.12 4.86 -83.69 -0.41 -0.53 16 5 C -0.11 -2.20 9.60 -39.77 -0.38 -2.58 16 6 C -0.15 -3.38 8.59 -39.27 -0.34 -3.72 16 7 C 0.12 2.80 5.54 -106.79 -0.59 2.21 16 8 C -0.45 -11.00 9.04 -37.87 -0.34 -11.34 16 9 H 0.08 1.86 7.87 -52.49 -0.41 1.45 16 10 C 0.07 1.70 5.22 -17.34 -0.09 1.61 16 11 N -0.79 -18.96 10.93 55.54 0.61 -18.35 16 12 Si 0.91 17.42 29.58 -169.99 -5.03 12.40 16 13 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16 14 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 15 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 16 C -0.21 -4.66 9.74 -39.26 -0.38 -5.04 16 17 C -0.07 -1.46 9.35 -39.77 -0.37 -1.84 16 18 S 2.67 41.90 5.42 -107.50 -0.58 41.32 16 19 O -0.93 -17.90 16.43 -57.17 -0.94 -18.84 16 20 O -0.96 -15.19 15.92 -57.17 -0.91 -16.10 16 21 C -0.63 -8.27 5.63 -39.58 -0.22 -8.49 16 22 C -0.02 -0.23 8.30 -39.58 -0.33 -0.56 16 23 C -0.08 -0.83 9.56 -39.58 -0.38 -1.21 16 24 C 0.00 0.01 6.85 -79.95 -0.55 -0.54 16 25 N 0.02 0.30 4.45 33.96 0.15 0.45 16 26 O -0.15 -2.09 18.45 -29.46 -0.54 -2.63 16 27 O -0.15 -2.11 18.45 -29.46 -0.54 -2.65 16 28 C -0.07 -0.88 9.56 -39.58 -0.38 -1.26 16 29 C -0.01 -0.14 7.77 -39.58 -0.31 -0.45 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.46 6.58 -51.93 -0.34 0.12 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.05 7.60 -51.93 -0.39 0.65 16 34 H 0.09 0.96 6.89 -51.93 -0.36 0.60 16 35 H 0.08 1.51 5.75 -52.49 -0.30 1.21 16 36 H 0.12 2.93 6.29 -52.49 -0.33 2.60 16 37 H 0.28 6.23 8.30 -40.82 -0.34 5.89 16 38 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 39 H 0.09 1.64 7.98 -52.49 -0.42 1.22 16 40 H 0.16 1.34 7.48 -52.49 -0.39 0.94 16 41 H 0.16 1.28 7.61 -52.48 -0.40 0.88 16 42 H 0.16 1.71 7.61 -52.49 -0.40 1.32 16 43 H 0.17 2.30 7.50 -52.48 -0.39 1.91 16 LS Contribution 381.68 15.07 5.75 5.75 Total: -1.00 -28.58 381.68 -11.46 -40.05 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -4.55 Total: 7.01 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: -4.71 Total: -33.92 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.59 Total: -32.37 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -2.94 Total: -40.23 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.40 kcal Atomic # 16 Polarization: 41.90 SS G_CDS: -0.58 Total: 41.32 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.58 -11.46 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225029920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.865 kcal (2) G-P(sol) polarization free energy of solvation -28.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds