Wall clock time and date at job start Tue Mar 31 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38254 * 120.00025 * 2 1 4 4 C 1.38212 * 119.99861 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00057 * 0.02562 * 4 3 2 6 6 N 1.48021 * 119.99965 * 180.02562 * 5 4 3 7 7 O 1.21800 * 120.00257 * 359.97438 * 6 5 4 8 8 O 1.21799 * 119.99925 * 179.97438 * 6 5 4 9 9 C 1.38207 * 120.00031 * 359.74321 * 5 4 3 10 10 C 1.38214 * 120.00050 * 179.97438 * 2 1 3 11 11 S 1.76202 * 119.99802 * 359.97438 * 10 2 1 12 12 O 1.42093 * 106.40418 * 182.54112 * 11 10 2 13 13 O 1.42100 * 106.40302 * 49.61709 * 11 10 2 14 14 N 1.65602 * 107.22102 * 296.08223 * 11 10 2 15 15 C 1.46499 * 120.00592 * 97.19694 * 14 11 10 16 16 C 1.38865 * 119.99582 * 277.20340 * 14 11 10 17 17 C 1.39563 * 119.84089 * 24.72586 * 16 14 11 18 18 C 1.36344 * 120.15654 * 179.72389 * 17 16 14 19 19 C 1.40887 * 119.83431 * 0.54581 * 18 17 16 20 20 C 1.41142 * 120.15348 * 179.70702 * 19 18 17 21 21 H 1.08008 * 119.99839 * 214.77337 * 20 19 18 22 22 C 1.39864 * 120.00035 * 34.76656 * 20 19 18 23 23 N 1.30897 * 120.00195 * 355.68591 * 22 20 19 24 24 Si 1.86802 * 119.99818 * 175.68839 * 22 20 19 25 25 H 1.48500 * 109.47222 * 59.99620 * 24 22 20 26 26 H 1.48503 * 109.47106 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47075 * 299.99807 * 24 22 20 28 28 C 1.40881 * 119.69456 * 359.72556 * 19 18 17 29 29 C 1.36342 * 119.83179 * 0.02562 * 28 19 18 30 30 H 1.09000 * 109.46843 * 275.22307 * 1 2 3 31 31 H 1.08996 * 109.47156 * 35.21915 * 1 2 3 32 32 H 1.08995 * 109.47438 * 155.21846 * 1 2 3 33 33 H 1.07996 * 120.00098 * 0.02562 * 3 2 1 34 34 H 1.08005 * 120.00034 * 180.02562 * 4 3 2 35 35 H 1.08005 * 120.00699 * 180.27826 * 9 5 4 36 36 H 1.08998 * 109.47443 * 264.91883 * 15 14 11 37 37 H 1.09005 * 109.46477 * 24.91500 * 15 14 11 38 38 H 1.08996 * 109.47050 * 144.91348 * 15 14 11 39 39 H 1.07989 * 119.92252 * 359.97438 * 17 16 14 40 40 H 1.08002 * 120.08175 * 180.27227 * 18 17 16 41 41 H 0.96997 * 120.00216 * 179.97438 * 23 22 20 42 42 H 1.07997 * 120.08837 * 179.97438 * 28 19 18 43 43 H 1.07997 * 119.92018 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 7 5.7519 -0.0001 0.0017 7 8 6.3609 1.0547 0.0022 8 8 6.3608 -1.0549 0.0022 9 6 3.5806 -1.1970 0.0054 10 6 2.1981 -1.1970 0.0005 11 16 1.3170 -2.7229 0.0019 12 8 2.2957 -3.7513 0.0626 13 8 0.3511 -2.6295 -1.0362 14 7 0.4702 -2.7988 1.4230 15 6 -0.9417 -2.4093 1.4561 16 6 1.0985 -3.2315 2.5833 17 6 2.4831 -3.1107 2.7097 18 6 3.1060 -3.5283 3.8484 19 6 2.3496 -4.0934 4.8941 20 6 2.9882 -4.5336 6.0733 21 1 2.6175 -5.4032 6.5958 22 6 4.1012 -3.8440 6.5651 23 7 4.6021 -2.8421 5.8878 24 14 4.8728 -4.3527 8.1885 25 1 5.3349 -5.7610 8.0971 26 1 6.0294 -3.4698 8.4850 27 1 3.8669 -4.2312 9.2742 28 6 0.9530 -4.2174 4.7572 29 6 0.3429 -3.7909 3.6149 30 1 -0.3633 0.0936 1.0234 31 1 -0.3633 0.8395 -0.5926 32 1 -0.3634 -0.9330 -0.4307 33 1 1.6583 2.1326 0.0004 34 1 4.1205 2.1326 0.0010 35 1 4.1205 -2.1324 0.0099 36 1 -1.0241 -1.3676 1.7663 37 1 -1.3747 -2.5280 0.4628 38 1 -1.4767 -3.0426 2.1638 39 1 3.0621 -2.6817 1.9054 40 1 4.1770 -3.4302 3.9467 41 1 5.3737 -2.3635 6.2291 42 1 0.3670 -4.6501 5.5546 43 1 -0.7276 -3.8856 3.5082 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225082827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:25 Heat of formation + Delta-G solvation = -8.257218 kcal Electronic energy + Delta-G solvation = -32843.719327 eV Core-core repulsion = 28370.974174 eV Total energy + Delta-G solvation = -4472.745152 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.097 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.23787 -39.92742 -38.50967 -37.55438 -36.59520 -35.94555 -35.67658 -33.80463 -33.15855 -32.03865 -30.07165 -29.26094 -28.79785 -26.72498 -25.27388 -24.60519 -24.02121 -22.29480 -21.39158 -20.84348 -20.06491 -18.80783 -18.66399 -17.58477 -17.53943 -17.42691 -16.77906 -16.60965 -16.20546 -16.00549 -15.19333 -14.93609 -14.66403 -14.62858 -14.33342 -13.82686 -13.36012 -13.25082 -13.01630 -12.89429 -12.80231 -12.56058 -12.38290 -12.28466 -12.26541 -11.93787 -11.76615 -11.66697 -11.59063 -11.32723 -11.24513 -11.14671 -11.13399 -11.05783 -10.97403 -10.76660 -10.14422 -9.95186 -9.73529 -9.57875 -9.50363 -9.11417 -7.76927 -7.03055 -6.70209 -4.43466 -0.37362 0.12714 0.36444 1.12100 1.28696 2.57821 2.63647 2.87315 2.94823 3.06528 3.08108 3.11323 3.60093 3.90007 3.92558 4.08425 4.17909 4.29821 4.48603 4.57705 4.69724 4.94089 4.98674 5.01754 5.06082 5.19799 5.33092 5.42990 5.45174 5.54306 5.60872 5.69203 5.75749 5.90777 5.95841 6.10077 6.30758 6.46994 6.80532 6.97837 7.00821 7.23326 7.43858 7.59221 7.68183 7.82290 7.95052 8.14767 8.51179 8.82694 8.84395 10.21371 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.008176 B = 0.004011 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3423.823153 B = 6979.362754 C = 9308.552930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.071 3.929 3 C -0.141 4.141 4 C -0.003 4.003 5 C -0.070 4.070 6 N 0.031 4.969 7 O -0.163 6.163 8 O -0.147 6.147 9 C 0.053 3.947 10 C -0.681 4.681 11 S 2.694 3.306 12 O -0.929 6.929 13 O -0.954 6.954 14 N -0.917 5.917 15 C 0.068 3.932 16 C 0.023 3.977 17 C -0.133 4.133 18 C -0.121 4.121 19 C 0.097 3.903 20 C -0.460 4.460 21 H 0.077 0.923 22 C 0.070 3.930 23 N -0.811 5.811 24 Si 0.917 3.083 25 H -0.265 1.265 26 H -0.279 1.279 27 H -0.266 1.266 28 C -0.195 4.195 29 C -0.108 4.108 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.174 0.826 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.136 0.864 41 H 0.280 0.720 42 H 0.100 0.900 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.443 9.120 -10.152 16.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.069 3.931 3 C -0.161 4.161 4 C -0.022 4.022 5 C -0.154 4.154 6 N 0.551 4.449 7 O -0.377 6.377 8 O -0.366 6.366 9 C 0.033 3.967 10 C -0.764 4.764 11 S 2.782 3.218 12 O -0.920 6.920 13 O -0.945 6.945 14 N -0.748 5.748 15 C -0.076 4.076 16 C -0.069 4.069 17 C -0.154 4.154 18 C -0.141 4.141 19 C 0.094 3.906 20 C -0.490 4.490 21 H 0.096 0.904 22 C -0.146 4.146 23 N -0.438 5.438 24 Si 0.741 3.259 25 H -0.189 1.189 26 H -0.204 1.204 27 H -0.191 1.191 28 C -0.216 4.216 29 C -0.130 4.130 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.125 0.875 33 H 0.173 0.827 34 H 0.178 0.822 35 H 0.191 0.809 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.153 0.847 41 H 0.091 0.909 42 H 0.118 0.882 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.965 8.746 -10.849 16.570 hybrid contribution 1.143 0.797 1.115 1.784 sum -7.822 9.543 -9.734 15.716 Atomic orbital electron populations 1.22037 0.89212 1.07526 1.05161 1.19983 0.97047 0.91537 0.84491 1.21204 0.92599 0.98892 1.03360 1.21291 0.94839 0.97245 0.88857 1.21116 0.80052 0.96920 1.17288 1.43463 1.03173 1.00627 0.97598 1.94512 1.68789 1.20743 1.53688 1.94604 1.68696 1.20427 1.52826 1.20820 0.92521 0.98716 0.84602 1.31333 1.04647 1.22064 1.18378 1.02177 0.73508 0.73516 0.72574 1.93646 1.60479 1.52079 1.85751 1.93514 1.60311 1.86753 1.53880 1.54441 1.19132 1.77225 1.23959 1.21989 0.80651 1.01062 1.03920 1.16919 0.91597 1.10181 0.88250 1.20300 0.91436 1.04670 0.98964 1.21185 1.00893 1.01369 0.90696 1.17694 0.90518 0.90286 0.92122 1.19455 1.10168 1.11910 1.07482 0.90444 1.25885 0.95565 0.93968 0.99147 1.69736 1.20129 1.16788 1.37152 0.86229 0.78726 0.79469 0.81442 1.18912 1.20379 1.19114 1.20752 0.94755 1.08532 0.97539 1.20004 0.97346 1.01412 0.94204 0.87725 0.88586 0.87507 0.82683 0.82229 0.80863 0.92179 0.89715 0.89570 0.89635 0.84689 0.90898 0.88194 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 8.32 36.01 0.30 -1.26 16 2 C 0.07 0.79 5.87 -104.62 -0.61 0.18 16 3 C -0.14 -1.32 9.72 -39.58 -0.38 -1.70 16 4 C 0.00 -0.04 9.56 -39.58 -0.38 -0.41 16 5 C -0.07 -1.01 6.85 -79.95 -0.55 -1.56 16 6 N 0.03 0.50 4.45 33.96 0.15 0.65 16 7 O -0.16 -2.56 18.45 -29.46 -0.54 -3.10 16 8 O -0.15 -2.60 18.45 -29.46 -0.54 -3.14 16 9 C 0.05 0.82 7.70 -39.59 -0.30 0.51 16 10 C -0.68 -9.70 5.37 -39.58 -0.21 -9.91 16 11 S 2.69 43.06 4.47 -107.50 -0.48 42.58 16 12 O -0.93 -18.08 14.63 -57.17 -0.84 -18.92 16 13 O -0.95 -14.68 14.12 -57.17 -0.81 -15.49 16 14 N -0.92 -14.60 3.31 -65.26 -0.22 -14.81 16 15 C 0.07 0.79 8.71 59.85 0.52 1.31 16 16 C 0.02 0.46 6.11 -83.69 -0.51 -0.05 16 17 C -0.13 -2.99 8.45 -39.77 -0.34 -3.33 16 18 C -0.12 -3.07 8.61 -39.26 -0.34 -3.41 16 19 C 0.10 2.45 5.55 -106.79 -0.59 1.86 16 20 C -0.46 -11.74 9.02 -37.87 -0.34 -12.08 16 21 H 0.08 1.89 7.85 -52.48 -0.41 1.47 16 22 C 0.07 1.72 5.42 -17.34 -0.09 1.62 16 23 N -0.81 -20.71 10.60 55.54 0.59 -20.12 16 24 Si 0.92 18.59 29.56 -169.99 -5.03 13.56 16 25 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 26 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 27 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 28 C -0.20 -4.40 9.74 -39.26 -0.38 -4.78 16 29 C -0.11 -2.16 9.28 -39.77 -0.37 -2.52 16 30 H 0.10 0.75 6.27 -51.93 -0.33 0.43 16 31 H 0.10 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.11 1.04 3.41 -51.93 -0.18 0.86 16 33 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 34 H 0.16 1.35 7.61 -52.48 -0.40 0.95 16 35 H 0.17 2.74 6.72 -52.48 -0.35 2.39 16 36 H 0.06 0.55 5.84 -51.93 -0.30 0.24 16 37 H 0.08 0.82 6.40 -51.93 -0.33 0.49 16 38 H 0.09 0.94 5.99 -51.93 -0.31 0.62 16 39 H 0.09 1.79 4.19 -52.49 -0.22 1.57 16 40 H 0.14 3.61 6.13 -52.49 -0.32 3.29 16 41 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 42 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 43 H 0.10 1.62 6.16 -52.49 -0.32 1.30 16 LS Contribution 362.74 15.07 5.47 5.47 Total: -1.00 -31.04 362.74 -10.71 -41.75 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -3.88 Total: 7.11 kcal Atomic # 6 Polarization: -30.95 SS G_CDS: -4.59 Total: -35.53 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.52 Total: -34.28 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -2.73 Total: -40.65 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Atomic # 16 Polarization: 43.06 SS G_CDS: -0.48 Total: 42.58 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.04 -10.71 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225082827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.493 kcal (2) G-P(sol) polarization free energy of solvation -31.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds