Wall clock time and date at job start Tue Mar 31 2020 06:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38254 * 120.00025 * 2 1 4 4 C 1.38212 * 119.99861 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00057 * 0.02562 * 4 3 2 6 6 N 1.48021 * 119.99965 * 180.02562 * 5 4 3 7 7 O 1.21800 * 120.00257 * 359.97438 * 6 5 4 8 8 O 1.21799 * 119.99925 * 179.97438 * 6 5 4 9 9 C 1.38207 * 120.00031 * 359.74321 * 5 4 3 10 10 C 1.38214 * 120.00050 * 179.97438 * 2 1 3 11 11 S 1.76202 * 119.99802 * 359.97438 * 10 2 1 12 12 O 1.42093 * 106.40418 * 182.54112 * 11 10 2 13 13 O 1.42100 * 106.40302 * 49.61709 * 11 10 2 14 14 N 1.65602 * 107.22102 * 296.08223 * 11 10 2 15 15 C 1.46499 * 120.00592 * 97.19694 * 14 11 10 16 16 C 1.38865 * 119.99582 * 277.20340 * 14 11 10 17 17 C 1.39563 * 119.84089 * 24.72586 * 16 14 11 18 18 C 1.36344 * 120.15654 * 179.72389 * 17 16 14 19 19 C 1.40887 * 119.83431 * 0.54581 * 18 17 16 20 20 C 1.41142 * 120.15348 * 179.70702 * 19 18 17 21 21 H 1.08008 * 119.99839 * 214.77337 * 20 19 18 22 22 C 1.39864 * 120.00035 * 34.76656 * 20 19 18 23 23 N 1.30897 * 120.00195 * 355.68591 * 22 20 19 24 24 Si 1.86802 * 119.99818 * 175.68839 * 22 20 19 25 25 H 1.48500 * 109.47222 * 59.99620 * 24 22 20 26 26 H 1.48503 * 109.47106 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47075 * 299.99807 * 24 22 20 28 28 C 1.40881 * 119.69456 * 359.72556 * 19 18 17 29 29 C 1.36342 * 119.83179 * 0.02562 * 28 19 18 30 30 H 1.09000 * 109.46843 * 275.22307 * 1 2 3 31 31 H 1.08996 * 109.47156 * 35.21915 * 1 2 3 32 32 H 1.08995 * 109.47438 * 155.21846 * 1 2 3 33 33 H 1.07996 * 120.00098 * 0.02562 * 3 2 1 34 34 H 1.08005 * 120.00034 * 180.02562 * 4 3 2 35 35 H 1.08005 * 120.00699 * 180.27826 * 9 5 4 36 36 H 1.08998 * 109.47443 * 264.91883 * 15 14 11 37 37 H 1.09005 * 109.46477 * 24.91500 * 15 14 11 38 38 H 1.08996 * 109.47050 * 144.91348 * 15 14 11 39 39 H 1.07989 * 119.92252 * 359.97438 * 17 16 14 40 40 H 1.08002 * 120.08175 * 180.27227 * 18 17 16 41 41 H 0.96997 * 120.00216 * 179.97438 * 23 22 20 42 42 H 1.07997 * 120.08837 * 179.97438 * 28 19 18 43 43 H 1.07997 * 119.92018 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 7 5.7519 -0.0001 0.0017 7 8 6.3609 1.0547 0.0022 8 8 6.3608 -1.0549 0.0022 9 6 3.5806 -1.1970 0.0054 10 6 2.1981 -1.1970 0.0005 11 16 1.3170 -2.7229 0.0019 12 8 2.2957 -3.7513 0.0626 13 8 0.3511 -2.6295 -1.0362 14 7 0.4702 -2.7988 1.4230 15 6 -0.9417 -2.4093 1.4561 16 6 1.0985 -3.2315 2.5833 17 6 2.4831 -3.1107 2.7097 18 6 3.1060 -3.5283 3.8484 19 6 2.3496 -4.0934 4.8941 20 6 2.9882 -4.5336 6.0733 21 1 2.6175 -5.4032 6.5958 22 6 4.1012 -3.8440 6.5651 23 7 4.6021 -2.8421 5.8878 24 14 4.8728 -4.3527 8.1885 25 1 5.3349 -5.7610 8.0971 26 1 6.0294 -3.4698 8.4850 27 1 3.8669 -4.2312 9.2742 28 6 0.9530 -4.2174 4.7572 29 6 0.3429 -3.7909 3.6149 30 1 -0.3633 0.0936 1.0234 31 1 -0.3633 0.8395 -0.5926 32 1 -0.3634 -0.9330 -0.4307 33 1 1.6583 2.1326 0.0004 34 1 4.1205 2.1326 0.0010 35 1 4.1205 -2.1324 0.0099 36 1 -1.0241 -1.3676 1.7663 37 1 -1.3747 -2.5280 0.4628 38 1 -1.4767 -3.0426 2.1638 39 1 3.0621 -2.6817 1.9054 40 1 4.1770 -3.4302 3.9467 41 1 5.3737 -2.3635 6.2291 42 1 0.3670 -4.6501 5.5546 43 1 -0.7276 -3.8856 3.5082 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225082827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:23 Heat of formation + Delta-G solvation = -26.445267 kcal Electronic energy + Delta-G solvation = -32844.508020 eV Core-core repulsion = 28370.974174 eV Total energy + Delta-G solvation = -4473.533846 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.097 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -43.45936 -40.90540 -40.13214 -38.84411 -37.86238 -37.32426 -37.17272 -35.01060 -34.62356 -33.02138 -31.74199 -30.89457 -29.86338 -28.02879 -26.45374 -26.05210 -25.03959 -23.41551 -22.96131 -22.50438 -21.24983 -20.11672 -19.94134 -19.27885 -18.84958 -18.79233 -18.01458 -17.88525 -17.19162 -17.12083 -16.85510 -16.02425 -15.94880 -15.72454 -15.44572 -15.20896 -14.78188 -14.63239 -14.10589 -14.04550 -13.94403 -13.89685 -13.63512 -13.60428 -13.43086 -13.39925 -13.23329 -12.97374 -12.88887 -12.77491 -12.62377 -12.53804 -12.47055 -12.46604 -12.40269 -12.01562 -11.67533 -11.39007 -11.24709 -11.06007 -10.72900 -10.54291 -9.54993 -8.74791 -8.50812 -6.32711 -1.46343 -1.06887 -0.71657 0.02072 0.15764 0.84973 1.08041 1.38841 1.47953 1.50747 1.55028 1.84630 2.22819 2.35397 2.77757 2.90588 3.13582 3.26195 3.33671 3.54704 3.61051 3.70035 3.81411 4.08918 4.16412 4.23330 4.33573 4.41290 4.42432 4.44443 4.64730 4.74483 4.83872 4.86246 4.87189 4.93632 5.08771 5.10236 5.24707 5.26564 5.32095 5.46282 5.64222 5.92947 6.02261 6.15361 6.30210 6.32997 6.66054 6.96193 7.01191 8.41494 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.008176 B = 0.004011 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3423.823153 B = 6979.362754 C = 9308.552930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.074 3.926 3 C -0.121 4.121 4 C 0.003 3.997 5 C -0.090 4.090 6 N 0.031 4.969 7 O -0.129 6.129 8 O -0.220 6.220 9 C 0.029 3.971 10 C -0.694 4.694 11 S 2.701 3.299 12 O -0.979 6.979 13 O -0.948 6.948 14 N -0.918 5.918 15 C 0.050 3.950 16 C 0.051 3.949 17 C -0.149 4.149 18 C -0.150 4.150 19 C 0.060 3.940 20 C -0.495 4.495 21 H 0.079 0.921 22 C 0.026 3.974 23 N -0.848 5.848 24 Si 0.985 3.015 25 H -0.262 1.262 26 H -0.275 1.275 27 H -0.257 1.257 28 C -0.197 4.197 29 C -0.106 4.106 30 H 0.125 0.875 31 H 0.137 0.863 32 H 0.094 0.906 33 H 0.212 0.788 34 H 0.192 0.808 35 H 0.147 0.853 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.281 0.719 42 H 0.116 0.884 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.318 12.271 -10.477 20.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.073 3.927 3 C -0.139 4.139 4 C -0.015 4.015 5 C -0.174 4.174 6 N 0.548 4.452 7 O -0.356 6.356 8 O -0.421 6.421 9 C 0.009 3.991 10 C -0.781 4.781 11 S 2.793 3.207 12 O -0.969 6.969 13 O -0.938 6.938 14 N -0.748 5.748 15 C -0.092 4.092 16 C -0.043 4.043 17 C -0.170 4.170 18 C -0.171 4.171 19 C 0.058 3.942 20 C -0.526 4.526 21 H 0.097 0.903 22 C -0.186 4.186 23 N -0.476 5.476 24 Si 0.806 3.194 25 H -0.186 1.186 26 H -0.200 1.200 27 H -0.181 1.181 28 C -0.217 4.217 29 C -0.128 4.128 30 H 0.143 0.857 31 H 0.155 0.845 32 H 0.112 0.888 33 H 0.229 0.771 34 H 0.209 0.791 35 H 0.164 0.836 36 H 0.110 0.890 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.123 0.877 41 H 0.091 0.909 42 H 0.134 0.866 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.874 11.714 -11.201 20.698 hybrid contribution 2.123 0.047 0.971 2.335 sum -10.751 11.761 -10.230 18.936 Atomic orbital electron populations 1.22251 0.86587 1.08663 1.06994 1.20546 0.98926 0.90838 0.82425 1.21851 0.91684 1.00205 1.00157 1.21835 0.95884 0.96707 0.87119 1.21323 0.78472 0.98163 1.19459 1.43779 1.04269 1.00222 0.96978 1.94443 1.69582 1.20426 1.51141 1.94624 1.69700 1.20969 1.56837 1.20691 0.93411 0.98473 0.86542 1.30984 1.03845 1.22495 1.20769 1.01675 0.72961 0.73489 0.72587 1.93595 1.61979 1.54960 1.86356 1.93521 1.60002 1.86939 1.53383 1.54432 1.21044 1.77313 1.22043 1.22482 0.77687 1.03227 1.05816 1.16927 0.90676 1.07501 0.89196 1.20466 0.93273 1.04931 0.98350 1.21027 0.99864 1.03783 0.92393 1.18013 0.92184 0.91683 0.92332 1.19714 1.11725 1.12810 1.08363 0.90298 1.26739 0.95733 0.93691 1.02399 1.69866 1.20799 1.18168 1.38790 0.85196 0.77909 0.79001 0.77247 1.18602 1.19970 1.18075 1.21021 0.93737 1.07980 0.98984 1.20427 0.99631 0.99830 0.92907 0.85699 0.84504 0.88789 0.77114 0.79129 0.83575 0.89022 0.87657 0.88486 0.89130 0.87709 0.90876 0.86611 0.83726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.12 8.32 71.24 0.59 -1.53 16 2 C 0.07 1.37 5.87 -19.87 -0.12 1.26 16 3 C -0.12 -1.61 9.72 22.27 0.22 -1.39 16 4 C 0.00 0.06 9.56 22.27 0.21 0.27 16 5 C -0.09 -2.61 6.85 36.37 0.25 -2.36 16 6 N 0.03 1.06 4.45 -46.47 -0.21 0.85 16 7 O -0.13 -4.01 18.45 18.89 0.35 -3.66 16 8 O -0.22 -8.68 18.45 18.89 0.35 -8.33 16 9 C 0.03 0.95 7.70 22.27 0.17 1.12 16 10 C -0.69 -19.28 5.37 22.27 0.12 -19.16 16 11 S 2.70 85.10 4.47 -56.49 -0.25 84.85 16 12 O -0.98 -40.25 14.63 -128.00 -1.87 -42.12 16 13 O -0.95 -27.41 14.12 -128.00 -1.81 -29.21 16 14 N -0.92 -27.28 3.31 -360.38 -1.19 -28.47 16 15 C 0.05 0.93 8.71 127.77 1.11 2.04 16 16 C 0.05 2.01 6.11 38.67 0.24 2.25 16 17 C -0.15 -7.03 8.45 22.15 0.19 -6.85 16 18 C -0.15 -8.15 8.61 22.48 0.19 -7.95 16 19 C 0.06 3.21 5.55 -21.27 -0.12 3.09 16 20 C -0.50 -26.53 9.02 23.38 0.21 -26.31 16 21 H 0.08 4.01 7.85 -2.91 -0.02 3.98 16 22 C 0.03 1.32 5.42 85.23 0.46 1.78 16 23 N -0.85 -46.07 10.60 21.81 0.23 -45.84 16 24 Si 0.99 39.41 29.56 68.60 2.03 41.44 16 25 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 26 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 27 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 28 C -0.20 -8.83 9.74 22.47 0.22 -8.61 16 29 C -0.11 -4.04 9.28 22.15 0.21 -3.84 16 30 H 0.13 0.97 6.27 -2.39 -0.01 0.96 16 31 H 0.14 0.49 8.12 -2.39 -0.02 0.47 16 32 H 0.09 1.38 3.41 -2.39 -0.01 1.37 16 33 H 0.21 0.52 8.06 -2.91 -0.02 0.49 16 34 H 0.19 2.34 7.61 -2.91 -0.02 2.32 16 35 H 0.15 5.36 6.72 -2.91 -0.02 5.34 16 36 H 0.09 1.14 5.84 -2.39 -0.01 1.13 16 37 H 0.11 1.56 6.40 -2.38 -0.02 1.54 16 38 H 0.10 1.61 5.99 -2.39 -0.01 1.60 16 39 H 0.09 4.10 4.19 -2.92 -0.01 4.09 16 40 H 0.11 6.20 6.13 -2.91 -0.02 6.18 16 41 H 0.28 14.16 8.30 -92.71 -0.77 13.39 16 42 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 43 H 0.15 4.12 6.16 -2.91 -0.02 4.10 16 Total: -1.00 -76.46 362.74 2.89 -73.57 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 1.11 Total: 23.13 kcal Atomic # 6 Polarization: -70.35 SS G_CDS: 4.15 Total: -66.20 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -1.17 Total: -73.46 kcal Atomic # 8 Polarization: -80.35 SS G_CDS: -2.98 Total: -83.33 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Atomic # 16 Polarization: 85.10 SS G_CDS: -0.25 Total: 84.85 kcal Total: -76.46 2.89 -73.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225082827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.125 kcal (2) G-P(sol) polarization free energy of solvation -76.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds