Wall clock time and date at job start Tue Mar 31 2020 05:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39872 * 125.89656 * 2 1 4 4 C 1.35316 * 107.91954 * 179.71226 * 3 2 1 5 5 C 1.50699 * 126.12811 * 180.26397 * 4 3 2 6 6 N 1.34952 * 107.74501 * 0.42364 * 4 3 2 7 7 C 1.46496 * 126.04053 * 179.83537 * 6 4 3 8 8 C 1.50702 * 109.47468 * 269.72152 * 7 6 4 9 9 C 1.38358 * 119.85236 * 89.99493 * 8 7 6 10 10 C 1.37951 * 120.14690 * 180.02562 * 9 8 7 11 11 C 1.39602 * 119.85283 * 359.97438 * 10 9 8 12 12 C 1.47789 * 120.14793 * 180.02562 * 11 10 9 13 13 O 1.21555 * 120.00297 * 359.97438 * 12 11 10 14 14 N 1.34786 * 119.99799 * 179.97438 * 12 11 10 15 15 C 1.39127 * 119.99803 * 184.01564 * 14 12 11 16 16 C 1.39507 * 119.83405 * 144.42992 * 15 14 12 17 17 C 1.36362 * 120.16747 * 179.75921 * 16 15 14 18 18 C 1.40874 * 119.82566 * 0.53709 * 17 16 15 19 19 C 1.41140 * 120.16275 * 179.69762 * 18 17 16 20 20 H 1.08000 * 120.00265 * 214.80081 * 19 18 17 21 21 C 1.39920 * 119.99734 * 34.79501 * 19 18 17 22 22 N 1.30870 * 119.99939 * 355.57556 * 21 19 18 23 23 Si 1.86793 * 119.99846 * 175.58126 * 21 19 18 24 24 H 1.48500 * 109.47533 * 89.99824 * 23 21 19 25 25 H 1.48500 * 109.46963 * 209.99969 * 23 21 19 26 26 H 1.48498 * 109.47121 * 329.99627 * 23 21 19 27 27 C 1.40879 * 119.68095 * 359.71727 * 18 17 16 28 28 C 1.36360 * 119.82863 * 0.02562 * 27 18 17 29 29 C 1.39606 * 119.70359 * 0.26560 * 11 10 9 30 30 C 1.37957 * 119.84822 * 359.45597 * 29 11 10 31 31 N 1.30835 * 125.90118 * 179.97438 * 2 1 3 32 32 H 1.08987 * 109.47530 * 270.00259 * 1 2 3 33 33 H 1.09002 * 109.46941 * 30.00496 * 1 2 3 34 34 H 1.09001 * 109.46655 * 149.99723 * 1 2 3 35 35 H 1.08002 * 126.03937 * 359.97438 * 3 2 1 36 36 H 1.08997 * 109.47094 * 270.18483 * 5 4 3 37 37 H 1.08992 * 109.47109 * 30.19033 * 5 4 3 38 38 H 1.09000 * 109.46878 * 150.19062 * 5 4 3 39 39 H 1.08997 * 109.47766 * 149.71466 * 7 6 4 40 40 H 1.09007 * 109.46886 * 29.72004 * 7 6 4 41 41 H 1.08007 * 119.92910 * 0.02562 * 9 8 7 42 42 H 1.08004 * 120.07583 * 179.97438 * 10 9 8 43 43 H 0.96994 * 119.99463 * 4.29043 * 14 12 11 44 44 H 1.08000 * 119.91575 * 359.97438 * 16 15 14 45 45 H 1.07999 * 120.08780 * 180.23179 * 17 16 15 46 46 H 0.96998 * 120.00224 * 180.02562 * 22 21 19 47 47 H 1.08001 * 120.08529 * 179.97438 * 27 18 17 48 48 H 1.08007 * 119.91381 * 180.02562 * 28 27 18 49 49 H 1.07999 * 120.07641 * 179.72424 * 29 11 10 50 50 H 1.07995 * 119.92611 * 180.24779 * 30 29 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7154 0.0065 5 6 4.8350 1.5990 0.0144 6 7 3.6088 -0.6341 0.0009 7 6 4.7899 -1.5007 0.0015 8 6 5.1958 -1.7977 -1.4191 9 6 6.0911 -0.9659 -2.0678 10 6 6.4665 -1.2317 -3.3684 11 6 5.9412 -2.3432 -4.0298 12 6 6.3393 -2.6345 -5.4230 13 8 7.1254 -1.9053 -5.9956 14 7 5.8307 -3.7088 -6.0586 15 6 6.2680 -4.0307 -7.3395 16 6 6.3864 -5.3685 -7.7167 17 6 6.8097 -5.6917 -8.9720 18 6 7.1386 -4.6706 -9.8851 19 6 7.5835 -4.9971 -11.1842 20 1 8.3249 -4.3815 -11.6718 21 6 7.0642 -6.1186 -11.8402 22 7 6.2314 -6.9135 -11.2178 23 14 7.5597 -6.4813 -13.6043 24 1 8.7676 -7.3451 -13.6117 25 1 6.4474 -7.1798 -14.2972 26 1 7.8580 -5.2073 -14.3066 27 6 7.0216 -3.3219 -9.4953 28 6 6.5919 -3.0140 -8.2383 29 6 5.0344 -3.1756 -3.3712 30 6 4.6719 -2.9015 -2.0686 31 7 2.2742 -1.0598 0.0005 32 1 -0.3634 0.0000 1.0275 33 1 -0.3633 0.8900 -0.5139 34 1 -0.3633 -0.8900 -0.5139 35 1 1.9922 2.1599 -0.0004 36 1 5.1330 1.8162 -1.0113 37 1 4.6057 2.5308 0.5313 38 1 5.6493 1.0889 0.5291 39 1 4.5561 -2.4333 0.5151 40 1 5.6090 -0.9982 0.5159 41 1 6.4971 -0.1065 -1.5548 42 1 7.1652 -0.5814 -3.8737 43 1 5.1570 -4.2550 -5.6245 44 1 6.1389 -6.1503 -7.0138 45 1 6.8973 -6.7278 -9.2639 46 1 5.8717 -7.6911 -11.6724 47 1 7.2723 -2.5339 -10.1899 48 1 6.5013 -1.9805 -7.9381 49 1 4.6209 -4.0345 -3.8787 50 1 3.9736 -3.5468 -1.5565 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225286796.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:12 Heat of formation + Delta-G solvation = 85.029695 kcal Electronic energy + Delta-G solvation = -31595.045816 eV Core-core repulsion = 27360.286787 eV Total energy + Delta-G solvation = -4234.759029 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.169 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.60224 -40.28531 -38.85002 -37.20079 -34.85878 -34.55123 -33.08858 -32.71050 -31.52475 -31.16484 -29.63784 -29.36501 -28.58629 -27.34606 -26.12323 -24.87187 -22.93043 -22.85783 -21.49232 -20.84576 -20.58117 -19.81009 -19.51745 -18.01629 -17.32060 -16.96445 -16.47546 -16.38096 -15.45846 -15.18292 -15.06790 -14.88982 -14.71877 -14.25292 -14.18471 -13.95868 -13.79240 -13.73666 -13.49600 -13.40966 -13.10939 -12.91522 -12.81909 -12.64826 -12.56360 -12.45355 -12.18003 -12.13195 -11.85515 -11.75425 -11.43123 -11.29782 -11.17718 -10.95651 -10.75876 -10.54589 -10.13918 -9.86755 -9.40410 -9.34869 -9.24909 -9.20337 -9.11240 -8.80022 -8.74318 -7.57881 -6.91618 -6.65119 -4.36402 0.52107 1.12497 1.59270 2.19165 2.52288 2.59566 2.99954 3.06501 3.08711 3.12298 3.24127 3.59072 3.84100 3.96156 4.07023 4.21571 4.28752 4.50139 4.63133 4.65379 4.67812 4.71786 4.85730 4.96348 5.03683 5.06771 5.11393 5.27800 5.32239 5.38422 5.40590 5.50309 5.56445 5.62095 5.63040 5.72963 5.92709 6.01212 6.12727 6.15351 6.18500 6.41214 6.44118 6.57902 6.70784 6.74341 6.89286 7.03904 7.17253 7.26559 7.50477 7.61382 7.70224 7.82789 8.03741 8.20574 8.28395 8.58098 8.67463 8.90005 8.96715 10.26144 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.019979 B = 0.001473 C = 0.001441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.102436 B =19000.859021 C =19427.444460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.072 3.928 3 C -0.275 4.275 4 C 0.088 3.912 5 C -0.095 4.095 6 N -0.365 5.365 7 C 0.173 3.827 8 C -0.103 4.103 9 C -0.109 4.109 10 C -0.065 4.065 11 C -0.109 4.109 12 C 0.538 3.462 13 O -0.527 6.527 14 N -0.642 5.642 15 C 0.000 4.000 16 C -0.118 4.118 17 C -0.141 4.141 18 C 0.101 3.899 19 C -0.460 4.460 20 H 0.076 0.924 21 C 0.069 3.931 22 N -0.812 5.812 23 Si 0.916 3.084 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.263 1.263 27 C -0.205 4.205 28 C -0.083 4.083 29 C -0.091 4.091 30 C -0.096 4.096 31 N -0.294 5.294 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.145 0.855 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.127 0.873 42 H 0.140 0.860 43 H 0.395 0.605 44 H 0.091 0.909 45 H 0.133 0.867 46 H 0.278 0.722 47 H 0.097 0.903 48 H 0.108 0.892 49 H 0.130 0.870 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.776 11.070 24.691 27.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.094 4.094 3 C -0.304 4.304 4 C -0.039 4.039 5 C -0.154 4.154 6 N -0.147 5.147 7 C 0.053 3.947 8 C -0.104 4.104 9 C -0.127 4.127 10 C -0.084 4.084 11 C -0.112 4.112 12 C 0.325 3.675 13 O -0.405 6.405 14 N -0.284 5.284 15 C -0.092 4.092 16 C -0.138 4.138 17 C -0.161 4.161 18 C 0.099 3.901 19 C -0.491 4.491 20 H 0.095 0.905 21 C -0.145 4.145 22 N -0.439 5.439 23 Si 0.741 3.259 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.187 1.187 27 C -0.225 4.225 28 C -0.103 4.103 29 C -0.110 4.110 30 C -0.115 4.115 31 N -0.116 5.116 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.162 0.838 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.145 0.855 42 H 0.157 0.843 43 H 0.230 0.770 44 H 0.109 0.891 45 H 0.150 0.850 46 H 0.089 0.911 47 H 0.115 0.885 48 H 0.126 0.874 49 H 0.148 0.852 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.186 9.996 24.255 26.954 hybrid contribution -0.260 0.274 -0.622 0.728 sum -6.446 10.270 23.634 26.563 Atomic orbital electron populations 1.20166 0.86784 1.03336 1.02786 1.22309 0.96899 0.90830 0.99376 1.21108 0.91001 0.99732 1.18571 1.21090 0.97324 0.84671 1.00799 1.20520 0.93026 0.98222 1.03609 1.48545 1.05021 1.03824 1.57269 1.20538 0.84437 0.95660 0.94115 1.20093 0.98136 0.96301 0.95892 1.20992 0.97843 0.99138 0.94768 1.21276 0.97825 0.95565 0.93734 1.20222 0.99133 0.97163 0.94713 1.18226 0.81590 0.82142 0.85494 1.90755 1.34850 1.47862 1.67032 1.42901 1.40859 1.28491 1.16178 1.17249 1.14368 0.93525 0.84097 1.20333 1.03352 0.92592 0.97559 1.21194 1.03187 1.00739 0.90982 1.17745 0.89216 0.90518 0.92665 1.19516 1.21391 1.08547 0.99601 0.90545 1.25890 0.93562 0.94622 1.00472 1.69758 1.24467 1.11995 1.37677 0.86184 0.78799 0.79323 0.81612 1.19498 1.20287 1.18703 1.20821 1.09458 0.96232 0.96037 1.20409 0.99837 0.97306 0.92767 1.21375 0.96146 0.98793 0.94693 1.20971 0.99006 0.97026 0.94499 1.77324 0.86162 1.22627 1.25485 0.90664 0.90495 0.90946 0.83768 0.89890 0.89597 0.91120 0.87724 0.87994 0.85481 0.84266 0.77018 0.89056 0.84968 0.91118 0.88512 0.87447 0.85232 0.85219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.45 36.01 0.38 -0.13 16 2 C 0.07 0.74 7.22 -82.41 -0.59 0.14 16 3 C -0.28 -2.56 10.65 -40.01 -0.43 -2.98 16 4 C 0.09 0.77 6.93 -82.26 -0.57 0.20 16 5 C -0.10 -0.49 9.90 36.00 0.36 -0.13 16 6 N -0.36 -3.56 3.60 -58.31 -0.21 -3.77 16 7 C 0.17 1.27 6.36 -5.19 -0.03 1.24 16 8 C -0.10 -0.94 5.47 -104.53 -0.57 -1.51 16 9 C -0.11 -1.02 9.68 -39.64 -0.38 -1.40 16 10 C -0.07 -0.80 9.60 -39.18 -0.38 -1.17 16 11 C -0.11 -1.51 5.87 -104.97 -0.62 -2.13 16 12 C 0.54 9.71 7.60 -12.35 -0.09 9.62 16 13 O -0.53 -11.39 13.77 5.32 0.07 -11.32 16 14 N -0.64 -11.60 5.25 -10.61 -0.06 -11.65 16 15 C 0.00 -0.01 6.30 -83.60 -0.53 -0.53 16 16 C -0.12 -2.71 9.90 -39.78 -0.39 -3.10 16 17 C -0.14 -3.63 8.61 -39.26 -0.34 -3.97 16 18 C 0.10 2.72 5.55 -106.80 -0.59 2.12 16 19 C -0.46 -12.28 9.02 -37.85 -0.34 -12.62 16 20 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 21 C 0.07 1.75 5.42 -17.33 -0.09 1.66 16 22 N -0.81 -20.89 10.60 55.55 0.59 -20.30 16 23 Si 0.92 18.93 29.56 -169.99 -5.03 13.90 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 27 C -0.21 -5.24 9.74 -39.26 -0.38 -5.62 16 28 C -0.08 -2.02 8.60 -39.79 -0.34 -2.36 16 29 C -0.09 -1.04 9.54 -39.17 -0.37 -1.42 16 30 C -0.10 -0.96 9.68 -39.64 -0.38 -1.35 16 31 N -0.29 -3.46 12.57 33.67 0.42 -3.03 16 32 H 0.07 0.43 8.14 -51.94 -0.42 0.01 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.26 7.08 -51.93 -0.37 -0.11 16 39 H 0.10 0.68 8.08 -51.93 -0.42 0.26 16 40 H 0.10 0.48 6.98 -51.93 -0.36 0.11 16 41 H 0.13 0.83 7.85 -52.48 -0.41 0.42 16 42 H 0.14 1.73 7.65 -52.48 -0.40 1.33 16 43 H 0.40 5.72 6.86 -40.82 -0.28 5.44 16 44 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 45 H 0.13 3.50 6.13 -52.49 -0.32 3.18 16 46 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 47 H 0.10 2.34 8.06 -52.49 -0.42 1.91 16 48 H 0.11 2.57 6.23 -52.48 -0.33 2.25 16 49 H 0.13 1.26 6.41 -52.49 -0.34 0.92 16 50 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 421.13 15.07 6.35 6.35 Total: -1.00 -33.24 421.13 -11.14 -44.38 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -6.58 Total: 10.88 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -6.70 Total: -25.44 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.75 Total: -38.75 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.07 Total: -11.32 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -33.24 -11.14 -44.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225286796.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.407 kcal (2) G-P(sol) polarization free energy of solvation -33.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds