Wall clock time and date at job start Tue Mar 31 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47473 * 39.68841 * 3 2 1 5 5 C 1.36936 * 120.00201 * 86.63740 * 4 3 2 6 6 H 1.07996 * 120.00358 * 173.69243 * 5 4 3 7 7 C 1.38809 * 119.99941 * 353.68565 * 5 4 3 8 8 N 1.31624 * 119.99955 * 334.65383 * 7 5 4 9 9 Si 1.86793 * 120.00147 * 154.65042 * 7 5 4 10 10 H 1.48498 * 109.47541 * 84.99860 * 9 7 5 11 11 H 1.48501 * 109.47299 * 205.00382 * 9 7 5 12 12 H 1.48501 * 109.47119 * 325.00025 * 9 7 5 13 13 S 1.65602 * 119.99864 * 266.91011 * 4 3 2 14 14 O 1.42107 * 106.40221 * 23.26538 * 13 4 3 15 15 O 1.42101 * 106.40208 * 156.18271 * 13 4 3 16 16 C 1.76196 * 107.22087 * 269.72351 * 13 4 3 17 17 C 1.38270 * 119.94440 * 269.73263 * 16 13 4 18 18 C 1.38131 * 120.05790 * 179.72582 * 17 16 13 19 19 C 1.38752 * 119.94524 * 0.54308 * 18 17 16 20 20 O 1.35887 * 120.06363 * 179.75482 * 19 18 17 21 21 C 1.35884 * 117.99545 * 255.90886 * 20 19 18 22 22 C 1.38799 * 120.04420 * 185.65557 * 21 20 19 23 23 C 1.38124 * 119.99125 * 179.97438 * 22 21 20 24 24 C 1.38260 * 120.08566 * 359.97438 * 23 22 21 25 25 C 1.38474 * 120.08649 * 0.04342 * 24 23 22 26 26 F 1.35097 * 119.99499 * 179.97438 * 25 24 23 27 27 C 1.38387 * 120.01152 * 359.70324 * 25 24 23 28 28 C 1.38756 * 119.88277 * 359.72564 * 19 18 17 29 29 C 1.38139 * 119.94101 * 359.97438 * 28 19 18 30 30 H 1.09003 * 109.47165 * 279.68361 * 3 2 1 31 31 H 1.09000 * 109.46973 * 159.69348 * 3 2 1 32 32 H 0.97001 * 120.00163 * 179.97438 * 8 7 5 33 33 H 1.08002 * 119.96985 * 359.97438 * 17 16 13 34 34 H 1.08004 * 120.02685 * 180.24734 * 18 17 16 35 35 H 1.07997 * 119.99991 * 359.97438 * 22 21 20 36 36 H 1.07997 * 119.95630 * 179.97438 * 23 22 21 37 37 H 1.07995 * 119.95607 * 180.02562 * 24 23 22 38 38 H 1.07995 * 120.04122 * 180.30463 * 27 25 24 39 39 H 1.08006 * 120.03309 * 180.02562 * 28 19 18 40 40 H 1.08004 * 119.97442 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.0620 -0.8820 5 6 3.2594 -0.8205 -2.2201 6 1 3.7147 -1.5683 -2.8524 7 6 2.8389 0.3855 -2.7638 8 7 1.8787 1.0712 -2.1805 9 14 3.6357 1.0352 -4.3233 10 1 2.9710 0.4331 -5.5068 11 1 3.4931 2.5125 -4.3736 12 1 5.0768 0.6767 -4.3293 13 16 3.4464 -2.5572 -0.2620 14 8 2.6944 -2.6801 0.9374 15 8 3.3416 -3.4742 -1.3425 16 6 5.1429 -2.5410 0.2138 17 6 6.1171 -2.9206 -0.6909 18 6 7.4482 -2.9033 -0.3221 19 6 7.8064 -2.5155 0.9610 20 8 9.1148 -2.5024 1.3279 21 6 9.5637 -3.5070 2.1252 22 6 10.8595 -3.4741 2.6215 23 6 11.3146 -4.4956 3.4322 24 6 10.4806 -5.5514 3.7508 25 6 9.1874 -5.5879 3.2572 26 9 8.3742 -6.6206 3.5693 27 6 8.7258 -4.5638 2.4489 28 6 6.8264 -2.1404 1.8688 29 6 5.4971 -2.1534 1.4930 30 1 2.9714 -0.1720 1.0130 31 1 2.9708 0.9646 -0.3566 32 1 1.5851 1.9141 -2.5602 33 1 5.8375 -3.2270 -1.6881 34 1 8.2091 -3.1961 -1.0305 35 1 11.5118 -2.6498 2.3737 36 1 12.3230 -4.4696 3.8177 37 1 10.8384 -6.3487 4.3852 38 1 7.7157 -4.5893 2.0678 39 1 7.1025 -1.8376 2.8681 40 1 4.7339 -1.8612 2.1990 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225435492.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:43 Heat of formation + Delta-G solvation = -38.401311 kcal Electronic energy + Delta-G solvation = -31016.980951 eV Core-core repulsion = 26419.468347 eV Total energy + Delta-G solvation = -4597.512604 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 376.073 amu Computer time = 4.19 seconds Orbital eigenvalues (eV) -49.21606 -41.22038 -38.88184 -37.42767 -36.72852 -36.47196 -35.07655 -34.39101 -31.60662 -31.24684 -31.20910 -30.99924 -29.64706 -27.50700 -24.35341 -24.07946 -23.16821 -22.87059 -22.12990 -19.24386 -18.95115 -18.17477 -17.95405 -17.59157 -16.79792 -16.61316 -16.46305 -16.22651 -15.95910 -15.84709 -15.23864 -14.77438 -14.57782 -14.52625 -14.35474 -13.91993 -13.69466 -13.61458 -13.50591 -13.13725 -12.98060 -12.69158 -12.30458 -12.12124 -12.05031 -11.79570 -11.76319 -11.54857 -11.40302 -11.38131 -11.18629 -11.05393 -10.99830 -10.64517 -10.52456 -10.34439 -10.11188 -9.70178 -9.36402 -9.18420 -9.12152 -8.69811 -8.40980 -6.54319 -4.03932 0.53234 0.73168 0.84674 1.12569 1.22603 2.68091 3.12139 3.16704 3.20408 3.22275 3.39735 3.69117 3.84760 4.06778 4.22774 4.33072 4.36662 4.54238 4.56284 4.62288 4.63014 4.72790 4.82721 4.84451 5.02914 5.04653 5.26825 5.35880 5.46733 5.52837 5.60560 5.64557 5.77050 5.81586 5.85689 5.88918 5.90958 6.09910 6.20519 6.33094 6.45017 6.62360 6.84903 7.20101 7.36282 8.11575 8.64112 8.95679 9.04256 10.49936 Molecular weight = 376.07amu Principal moments of inertia in cm(-1) A = 0.014604 B = 0.002563 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.810097 B =10920.410107 C =11839.428882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.260 3.740 3 C 0.239 3.761 4 N -0.835 5.835 5 C -0.325 4.325 6 H 0.117 0.883 7 C 0.049 3.951 8 N -0.862 5.862 9 Si 0.911 3.089 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.268 1.268 13 S 2.650 3.350 14 O -0.972 6.972 15 O -0.956 6.956 16 C -0.666 4.666 17 C 0.000 4.000 18 C -0.143 4.143 19 C 0.114 3.886 20 O -0.253 6.253 21 C 0.156 3.844 22 C -0.157 4.157 23 C -0.054 4.054 24 C -0.190 4.190 25 C 0.139 3.861 26 F -0.134 7.134 27 C -0.233 4.233 28 C -0.156 4.156 29 C -0.012 4.012 30 H 0.082 0.918 31 H 0.127 0.873 32 H 0.275 0.725 33 H 0.150 0.850 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.135 0.865 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.071 -5.736 9.666 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.158 5.158 2 C -0.059 4.059 3 C 0.110 3.890 4 N -0.667 5.667 5 C -0.456 4.456 6 H 0.135 0.865 7 C -0.158 4.158 8 N -0.501 5.501 9 Si 0.736 3.264 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.193 1.193 13 S 2.739 3.261 14 O -0.962 6.962 15 O -0.946 6.946 16 C -0.746 4.746 17 C -0.019 4.019 18 C -0.162 4.162 19 C 0.072 3.928 20 O -0.165 6.165 21 C 0.113 3.887 22 C -0.176 4.176 23 C -0.072 4.072 24 C -0.209 4.209 25 C 0.120 3.880 26 F -0.112 7.112 27 C -0.253 4.253 28 C -0.175 4.175 29 C -0.031 4.031 30 H 0.100 0.900 31 H 0.145 0.855 32 H 0.086 0.914 33 H 0.167 0.833 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.162 0.838 39 H 0.153 0.847 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 17.887 -6.213 9.724 21.286 hybrid contribution 1.272 0.624 -0.810 1.632 sum 19.159 -5.589 8.914 21.858 Atomic orbital electron populations 1.80849 1.13633 1.09490 1.11840 1.28953 0.95086 0.91874 0.90028 1.18302 0.82296 0.96127 0.92313 1.53229 1.70872 1.28563 1.14008 1.19315 1.41774 1.03376 0.81160 0.86516 1.25039 0.94948 0.96404 0.99441 1.69908 1.22241 1.16111 1.41860 0.86218 0.80182 0.78170 0.81786 1.20226 1.20738 1.19286 1.04023 0.75025 0.74100 0.72933 1.93520 1.68874 1.86128 1.47630 1.93498 1.86122 1.61201 1.53746 1.32191 1.29255 1.11381 1.01815 1.20883 0.90951 0.91083 0.98994 1.21346 0.97228 1.01601 0.96017 1.18830 0.81390 0.98791 0.93804 1.84390 1.24458 1.44311 1.63311 1.18876 0.93070 0.86419 0.90383 1.20528 0.93800 1.01739 1.01516 1.20812 0.99543 0.91740 0.95120 1.21112 0.92856 1.01824 1.05068 1.17402 0.88685 0.85154 0.96783 1.91533 1.72370 1.56198 1.91147 1.21349 1.02583 0.95962 1.05384 1.21487 0.92936 1.02936 1.00166 1.20848 0.95902 0.92161 0.94198 0.90026 0.85540 0.91396 0.83259 0.84440 0.84177 0.84026 0.84435 0.83834 0.84693 0.83591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 69. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -12.00 18.54 42.15 0.78 -11.21 16 2 C 0.26 6.03 13.35 -20.76 -0.28 5.75 16 3 C 0.24 4.72 5.10 -6.83 -0.03 4.69 16 4 N -0.84 -17.66 2.88 -62.78 -0.18 -17.84 16 5 C -0.32 -7.42 9.38 -15.06 -0.14 -7.56 16 6 H 0.12 2.61 7.39 -52.49 -0.39 2.22 16 7 C 0.05 1.12 4.93 -17.43 -0.09 1.04 16 8 N -0.86 -20.78 8.96 55.49 0.50 -20.28 16 9 Si 0.91 18.20 29.62 -169.99 -5.04 13.17 16 10 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 11 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 12 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 13 S 2.65 52.28 5.61 -107.50 -0.60 51.68 16 14 O -0.97 -20.30 16.28 -57.17 -0.93 -21.23 16 15 O -0.96 -21.25 16.14 -57.17 -0.92 -22.17 16 16 C -0.67 -10.64 5.98 -39.56 -0.24 -10.87 16 17 C 0.00 0.00 9.51 -39.61 -0.38 -0.38 16 18 C -0.14 -1.85 9.99 -39.43 -0.39 -2.25 16 19 C 0.11 1.46 4.34 -39.20 -0.17 1.29 16 20 O -0.25 -3.03 9.98 -3.53 -0.04 -3.06 16 21 C 0.16 1.66 6.60 -39.21 -0.26 1.40 16 22 C -0.16 -1.29 9.99 -39.42 -0.39 -1.68 16 23 C -0.05 -0.36 10.04 -39.61 -0.40 -0.76 16 24 C -0.19 -1.51 10.02 -39.49 -0.40 -1.90 16 25 C 0.14 1.46 7.30 -39.44 -0.29 1.17 16 26 F -0.13 -1.56 17.27 2.25 0.04 -1.52 16 27 C -0.23 -2.61 8.95 -39.36 -0.35 -2.96 16 28 C -0.16 -1.95 9.10 -39.43 -0.36 -2.31 16 29 C -0.01 -0.17 9.52 -39.60 -0.38 -0.54 16 30 H 0.08 1.26 7.67 -51.93 -0.40 0.87 16 31 H 0.13 2.46 6.40 -51.93 -0.33 2.12 16 32 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 33 H 0.15 2.10 7.61 -52.49 -0.40 1.70 16 34 H 0.14 1.48 8.06 -52.48 -0.42 1.05 16 35 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 37 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.14 1.73 6.48 -52.49 -0.34 1.39 16 39 H 0.14 1.39 8.06 -52.48 -0.42 0.96 16 40 H 0.15 1.79 7.61 -52.48 -0.40 1.39 16 LS Contribution 372.45 15.07 5.61 5.61 Total: -1.00 -30.52 372.45 -8.82 -39.34 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -3.51 Total: 3.40 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -4.54 Total: -15.88 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 1.10 Total: -49.34 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -1.89 Total: -46.46 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.04 Total: 13.17 kcal Atomic # 16 Polarization: 52.28 SS G_CDS: -0.60 Total: 51.68 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.52 -8.82 -39.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225435492.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.937 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.19 seconds