Wall clock time and date at job start Tue Mar 31 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86805 * 120.00061 * 2 1 4 4 H 1.48500 * 109.46806 * 269.99750 * 3 2 1 5 5 H 1.48493 * 109.47173 * 30.00115 * 3 2 1 6 6 H 1.48501 * 109.47193 * 149.99953 * 3 2 1 7 7 C 1.39894 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99756 * 196.80730 * 7 2 1 9 9 C 1.41134 * 120.00017 * 16.80699 * 7 2 1 10 10 C 1.40881 * 120.16080 * 25.37509 * 9 7 2 11 11 C 1.36356 * 119.82907 * 180.27341 * 10 9 7 12 12 C 1.39512 * 120.16650 * 359.45816 * 11 10 9 13 13 N 1.39141 * 119.83646 * 180.27644 * 12 11 10 14 14 C 1.34780 * 119.99846 * 40.97760 * 13 12 11 15 15 S 1.71198 * 120.00292 * 5.74796 * 14 13 12 16 16 N 1.34780 * 119.99836 * 185.74747 * 14 13 12 17 17 C 1.46500 * 119.99899 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.46969 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.47116 * 179.97438 * 18 17 16 20 20 S 1.81401 * 109.47202 * 180.02562 * 19 18 17 21 21 C 1.81403 * 102.99826 * 180.02562 * 20 19 18 22 22 C 1.50702 * 109.46726 * 179.97438 * 21 20 19 23 23 C 1.34516 * 125.78739 * 89.71781 * 22 21 20 24 24 C 1.41382 * 106.84197 * 179.88712 * 23 22 21 25 25 C 1.34518 * 106.83710 * 0.36836 * 24 23 22 26 26 O 1.34294 * 125.79205 * 270.02024 * 22 21 20 27 27 C 1.39508 * 120.32936 * 0.25582 * 12 11 10 28 28 C 1.36357 * 120.16340 * 0.02562 * 27 12 11 29 29 H 0.96995 * 119.99797 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.08883 * 0.02562 * 10 9 7 31 31 H 1.08002 * 119.91660 * 179.73870 * 11 10 9 32 32 H 0.96993 * 120.00063 * 220.97329 * 13 12 11 33 33 H 0.97004 * 119.99920 * 359.97438 * 16 14 13 34 34 H 1.09000 * 109.47252 * 299.99919 * 17 16 14 35 35 H 1.09004 * 109.46850 * 60.00128 * 17 16 14 36 36 H 1.09000 * 109.47194 * 300.00110 * 18 17 16 37 37 H 1.09004 * 109.47103 * 60.00438 * 18 17 16 38 38 H 1.09000 * 109.47261 * 300.00170 * 19 18 17 39 39 H 1.09004 * 109.46694 * 60.00288 * 19 18 17 40 40 H 1.08995 * 109.47137 * 299.99771 * 21 20 19 41 41 H 1.08997 * 109.47098 * 59.99980 * 21 20 19 42 42 H 1.08000 * 126.58038 * 0.02562 * 23 22 21 43 43 H 1.08000 * 126.58173 * 180.16633 * 24 23 22 44 44 H 1.08006 * 125.78834 * 179.74532 * 25 24 23 45 45 H 1.07998 * 119.91898 * 180.02562 * 27 12 11 46 46 H 1.08005 * 120.08555 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4904 2.0464 -1.4001 5 1 1.4404 2.6527 0.7000 6 1 3.5405 1.4402 0.7000 7 6 2.0083 -1.2115 0.0005 8 1 3.0537 -1.2313 0.2710 9 6 1.3479 -2.4078 -0.3523 10 6 0.2146 -2.3706 -1.1884 11 6 -0.4216 -3.5300 -1.5205 12 6 0.0537 -4.7519 -1.0438 13 7 -0.5974 -5.9314 -1.3917 14 6 -1.0466 -6.1071 -2.6502 15 16 -0.6885 -4.9467 -3.8569 16 7 -1.7777 -7.1965 -2.9588 17 6 -2.2664 -7.3873 -4.3266 18 6 -3.0617 -8.6920 -4.4067 19 6 -3.5727 -8.8909 -5.8351 20 16 -4.5162 -10.4373 -5.9298 21 6 -5.0288 -10.4966 -7.6689 22 6 -5.8360 -11.7457 -7.9123 23 6 -7.1703 -11.8576 -7.7834 24 6 -7.5028 -13.1925 -8.1096 25 6 -6.3509 -13.8186 -8.4104 26 8 -5.3447 -12.9374 -8.2892 27 6 1.1789 -4.7973 -0.2203 28 6 1.8221 -3.6456 0.1249 29 1 -0.4849 0.8400 -0.0004 30 1 -0.1518 -1.4258 -1.5621 31 1 -1.2931 -3.5027 -2.1580 32 1 -0.7280 -6.6270 -0.7285 33 1 -1.9803 -7.8543 -2.2752 34 1 -2.9097 -6.5517 -4.6025 35 1 -1.4198 -7.4357 -5.0115 36 1 -2.4181 -9.5273 -4.1310 37 1 -3.9083 -8.6440 -3.7218 38 1 -4.2164 -8.0555 -6.1104 39 1 -2.7263 -8.9387 -6.5203 40 1 -5.6356 -9.6209 -7.8989 41 1 -4.1458 -10.5048 -8.3079 42 1 -7.8563 -11.0769 -7.4895 43 1 -8.4915 -13.6270 -8.1131 44 1 -6.2519 -14.8545 -8.6998 45 1 1.5414 -5.7468 0.1447 46 1 2.6934 -3.6821 0.7622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225593524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:17 Heat of formation + Delta-G solvation = 52.313726 kcal Electronic energy + Delta-G solvation = -26292.055946 eV Core-core repulsion = 22400.523312 eV Total energy + Delta-G solvation = -3891.532634 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 376.102 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.03020 -39.21941 -37.59337 -35.70533 -33.75013 -33.68458 -32.66234 -32.45500 -29.54657 -29.13873 -27.43477 -26.66301 -24.76770 -23.48621 -22.38897 -22.24019 -21.19790 -21.02375 -20.48919 -18.11024 -17.88592 -17.41136 -17.35263 -16.91823 -16.27280 -16.21846 -15.41965 -15.20948 -15.10049 -14.98527 -14.61964 -14.20405 -14.03116 -13.94573 -13.45850 -13.31061 -13.25041 -12.84160 -12.70197 -12.53221 -12.32759 -12.09229 -11.94871 -11.82243 -11.51360 -11.24895 -11.13197 -10.90317 -10.60686 -10.56422 -10.56147 -10.37624 -9.86270 -9.56026 -9.23152 -9.04445 -8.92711 -8.16767 -7.72047 -7.46621 -7.04094 -6.81537 -6.30774 -4.35682 0.60144 1.56395 1.68816 1.97975 2.28527 2.41600 2.46906 2.80917 3.02264 3.07676 3.10633 3.14309 3.26403 3.90962 3.93731 4.02653 4.36038 4.39568 4.46579 4.53753 4.58294 4.61162 4.69314 4.80332 5.04741 5.09068 5.31495 5.36951 5.42713 5.57020 5.67388 5.67938 5.75776 5.98707 6.06835 6.23603 6.35636 6.55051 6.62224 6.96968 7.01673 7.09440 7.20030 7.28679 7.58309 7.65653 7.92308 8.04886 8.18269 8.26266 8.62671 8.85071 8.95604 10.12825 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.031709 B = 0.001164 C = 0.001143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.806685 B =24046.671837 C =24491.520142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.451 4.451 8 H 0.080 0.920 9 C 0.120 3.880 10 C -0.162 4.162 11 C -0.038 4.038 12 C -0.038 4.038 13 N -0.590 5.590 14 C 0.543 3.457 15 S -0.642 6.642 16 N -0.700 5.700 17 C 0.137 3.863 18 C -0.117 4.117 19 C -0.085 4.085 20 S -0.241 6.241 21 C -0.010 4.010 22 C -0.005 4.005 23 C -0.183 4.183 24 C -0.216 4.216 25 C -0.031 4.031 26 O -0.171 6.171 27 C -0.081 4.081 28 C -0.225 4.225 29 H 0.283 0.717 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.390 0.610 33 H 0.392 0.608 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.205 0.795 45 H 0.087 0.913 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.995 -23.078 -11.951 29.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.480 4.480 8 H 0.098 0.902 9 C 0.117 3.883 10 C -0.183 4.183 11 C -0.060 4.060 12 C -0.131 4.131 13 N -0.208 5.208 14 C 0.185 3.815 15 S -0.514 6.514 16 N -0.333 5.333 17 C 0.011 3.989 18 C -0.156 4.156 19 C -0.234 4.234 20 S -0.011 6.011 21 C -0.157 4.157 22 C -0.056 4.056 23 C -0.206 4.206 24 C -0.235 4.235 25 C -0.100 4.100 26 O -0.067 6.067 27 C -0.102 4.102 28 C -0.246 4.246 29 H 0.094 0.906 30 H 0.138 0.862 31 H 0.128 0.872 32 H 0.225 0.775 33 H 0.227 0.773 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.131 0.869 41 H 0.120 0.880 42 H 0.169 0.831 43 H 0.169 0.831 44 H 0.222 0.778 45 H 0.105 0.895 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.843 -22.833 -12.081 29.308 hybrid contribution -0.019 0.180 0.321 0.368 sum -13.862 -22.653 -11.760 29.045 Atomic orbital electron populations 1.69847 1.07628 1.29496 1.33780 1.25964 0.94776 1.01494 0.92178 0.86278 0.80431 0.80357 0.79507 1.19078 1.20254 1.18553 1.19647 0.97839 0.91217 1.39259 0.90195 1.17722 0.91045 0.91954 0.87621 1.20872 0.99444 0.96752 1.01231 1.20499 0.99090 0.90741 0.95631 1.16898 1.00397 0.82925 1.12901 1.41983 1.53041 1.18878 1.06918 1.22336 0.82881 0.87703 0.88595 1.93291 1.75544 1.43290 1.39281 1.44728 1.53362 1.22203 1.13021 1.21493 0.99064 0.96693 0.81658 1.21513 1.00757 0.98115 0.95242 1.23278 1.02167 0.97080 1.00839 1.87264 1.69514 1.32108 1.12235 1.21634 1.02503 0.94558 0.96985 1.21322 0.92672 0.85946 1.05639 1.21651 0.94579 0.98280 1.06043 1.21878 0.99761 0.94642 1.07191 1.24130 0.85276 0.95484 1.05078 1.84023 1.36959 1.18422 1.67300 1.19968 0.93743 0.97085 0.99357 1.20471 1.03785 0.92556 1.07786 0.90647 0.86165 0.87161 0.77457 0.77288 0.89610 0.89668 0.90293 0.90248 0.89038 0.89095 0.86898 0.88050 0.83075 0.83138 0.77808 0.89488 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.99 10.94 55.55 0.61 -19.38 16 2 C 0.08 1.86 5.15 -17.34 -0.09 1.77 16 3 Si 0.91 18.49 29.59 -169.99 -5.03 13.46 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.45 -11.78 9.04 -37.86 -0.34 -12.12 16 8 H 0.08 2.00 7.90 -52.48 -0.41 1.58 16 9 C 0.12 3.16 5.57 -106.80 -0.59 2.57 16 10 C -0.16 -4.29 8.63 -39.26 -0.34 -4.63 16 11 C -0.04 -0.93 7.76 -39.78 -0.31 -1.24 16 12 C -0.04 -0.83 5.94 -83.59 -0.50 -1.33 16 13 N -0.59 -9.87 5.29 -11.28 -0.06 -9.93 16 14 C 0.54 9.03 7.73 -86.91 -0.67 8.36 16 15 S -0.64 -13.87 24.96 -107.50 -2.68 -16.56 16 16 N -0.70 -7.91 5.56 -62.03 -0.34 -8.25 16 17 C 0.14 1.34 5.13 -4.04 -0.02 1.32 16 18 C -0.12 -0.80 5.34 -26.73 -0.14 -0.94 16 19 C -0.08 -0.54 5.94 37.16 0.22 -0.32 16 20 S -0.24 -1.88 21.72 -107.50 -2.33 -4.22 16 21 C -0.01 -0.06 6.47 36.01 0.23 0.17 16 22 C 0.00 -0.04 6.58 -35.62 -0.23 -0.27 16 23 C -0.18 -1.33 10.81 -39.70 -0.43 -1.76 16 24 C -0.22 -1.37 10.91 -39.70 -0.43 -1.80 16 25 C -0.03 -0.19 12.09 29.42 0.36 0.17 16 26 O -0.17 -1.46 10.65 5.73 0.06 -1.40 16 27 C -0.08 -1.74 9.90 -39.79 -0.39 -2.14 16 28 C -0.23 -5.39 9.74 -39.26 -0.38 -5.77 16 29 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 30 H 0.12 3.33 6.18 -52.48 -0.32 3.01 16 31 H 0.11 2.71 6.16 -47.13 -0.29 2.42 16 32 H 0.39 4.96 8.84 -40.82 -0.36 4.60 16 33 H 0.39 3.16 8.49 -40.82 -0.35 2.81 16 34 H 0.09 0.95 7.99 -51.93 -0.42 0.54 16 35 H 0.09 0.94 7.99 -51.93 -0.41 0.53 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 39 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 40 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 43 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.21 0.47 8.06 -52.48 -0.42 0.05 16 45 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 46 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 LS Contribution 413.76 15.07 6.24 6.24 Total: -1.00 -33.01 413.76 -13.97 -46.98 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -6.35 Total: 11.02 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -4.07 Total: -17.96 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.20 Total: -37.57 kcal Atomic # 8 Polarization: -1.46 SS G_CDS: 0.06 Total: -1.40 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Atomic # 16 Polarization: -15.76 SS G_CDS: -5.02 Total: -20.77 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.01 -13.97 -46.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225593524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.298 kcal (2) G-P(sol) polarization free energy of solvation -33.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds