Wall clock time and date at job start Tue Mar 31 2020 06:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00181 * 2 1 4 4 C 1.52993 * 109.47492 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46810 * 64.99814 * 4 3 2 6 6 C 1.46497 * 120.00366 * 274.99957 * 5 4 3 7 7 C 1.50703 * 109.47421 * 275.00359 * 6 5 4 8 8 H 1.08003 * 119.99832 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99914 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00222 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99647 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47577 * 59.99974 * 11 9 7 13 13 H 1.48502 * 109.47108 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.47180 * 299.99589 * 11 9 7 15 15 S 1.65606 * 119.99669 * 95.00527 * 5 4 3 16 16 O 1.42096 * 106.39890 * 336.45873 * 15 5 4 17 17 O 1.42102 * 106.40003 * 203.53821 * 15 5 4 18 18 N 1.65601 * 107.21874 * 89.99823 * 15 5 4 19 19 C 1.46943 * 120.66731 * 269.97847 * 18 15 5 20 20 C 1.52936 * 108.73655 * 126.31389 * 19 18 15 21 21 C 1.53104 * 109.49905 * 54.67675 * 20 19 18 22 22 O 1.42905 * 109.50036 * 58.87886 * 21 20 19 23 23 C 1.53030 * 109.28243 * 178.81756 * 21 20 19 24 24 C 1.52960 * 109.58176 * 179.80000 * 23 21 20 25 25 C 1.53019 * 109.39622 * 299.90128 * 24 23 21 26 26 C 1.52977 * 109.38408 * 60.17693 * 25 24 23 27 27 C 1.53033 * 109.56238 * 299.89479 * 26 25 24 28 28 H 1.09004 * 109.74888 * 299.54680 * 27 26 25 29 29 C 1.46894 * 120.66304 * 89.99851 * 18 15 5 30 30 H 1.09000 * 109.47095 * 299.99883 * 1 2 3 31 31 H 1.08997 * 109.47184 * 59.99364 * 1 2 3 32 32 H 1.08997 * 109.47283 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46770 * 60.00017 * 3 2 1 34 34 H 1.08999 * 109.46911 * 300.00339 * 3 2 1 35 35 H 1.09000 * 109.46940 * 305.00395 * 4 3 2 36 36 H 1.08993 * 109.47774 * 185.00327 * 4 3 2 37 37 H 1.08999 * 109.46694 * 35.00151 * 6 5 4 38 38 H 1.08997 * 109.47372 * 154.99845 * 6 5 4 39 39 H 0.96999 * 120.00426 * 179.97438 * 10 9 7 40 40 H 1.08995 * 109.59576 * 246.03370 * 19 18 15 41 41 H 1.09007 * 109.59023 * 6.33687 * 19 18 15 42 42 H 1.08991 * 109.43077 * 294.66226 * 20 19 18 43 43 H 1.09003 * 109.41716 * 174.68148 * 20 19 18 44 44 H 0.96696 * 114.00036 * 59.88887 * 22 21 20 45 45 H 1.09001 * 109.45424 * 299.72448 * 23 21 20 46 46 H 1.09000 * 109.45305 * 59.66128 * 23 21 20 47 47 H 1.09001 * 109.48823 * 179.97438 * 24 23 21 48 48 H 1.09000 * 109.48377 * 59.87935 * 24 23 21 49 49 H 1.08999 * 109.49145 * 300.20059 * 25 24 23 50 50 H 1.09002 * 109.50328 * 180.15350 * 25 24 23 51 51 H 1.08993 * 109.45583 * 179.86361 * 26 25 24 52 52 H 1.08996 * 109.45445 * 59.91677 * 26 25 24 53 53 H 1.08998 * 109.57209 * 113.85348 * 29 18 15 54 54 H 1.08999 * 109.68187 * 353.53434 * 29 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.0003 -0.8950 -1.3783 7 6 5.2993 -1.4246 -0.8276 8 1 6.0329 -0.7424 -0.4241 9 6 5.5508 -2.7802 -0.8380 10 7 4.6569 -3.6111 -1.3280 11 14 7.1606 -3.4367 -0.1549 12 1 7.2810 -3.0605 1.2766 13 1 7.1857 -4.9161 -0.2822 14 1 8.2953 -2.8556 -0.9166 15 16 4.4453 1.5131 -2.5263 16 8 3.8177 2.7742 -2.3400 17 8 4.2756 0.7258 -3.6971 18 7 6.0732 1.7732 -2.3696 19 6 6.5784 2.9270 -1.6129 20 6 7.5616 2.4272 -0.5534 21 6 8.6548 1.5914 -1.2245 22 8 9.3346 2.3875 -2.1972 23 6 9.6519 1.1186 -0.1642 24 6 10.7449 0.2783 -0.8268 25 6 10.1100 -0.9379 -1.5047 26 6 9.1170 -0.4655 -2.5682 27 6 8.0228 0.3774 -1.9093 28 1 7.4909 -0.2220 -1.1704 29 6 7.0411 0.8552 -2.9847 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8514 0.5682 0.8409 36 1 3.9785 2.1764 0.0890 37 1 3.1677 -1.3218 -0.8191 38 1 3.9117 -1.1709 -2.4290 39 1 4.8339 -4.5648 -1.3356 40 1 7.0886 3.6127 -2.2892 41 1 5.7465 3.4405 -1.1306 42 1 7.0300 1.8140 0.1741 43 1 8.0147 3.2804 -0.0483 44 1 9.7598 3.1758 -1.8327 45 1 10.1049 1.9839 0.3197 46 1 9.1314 0.5174 0.5812 47 1 11.4544 -0.0573 -0.0704 48 1 11.2644 0.8801 -1.5724 49 1 9.5871 -1.5377 -0.7599 50 1 10.8877 -1.5395 -1.9752 51 1 8.6659 -1.3309 -3.0535 52 1 9.6401 0.1357 -3.3118 53 1 7.5869 1.3743 -3.7726 54 1 6.5169 -0.0018 -3.4073 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225710362.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:48 Heat of formation + Delta-G solvation = -203.608550 kcal Electronic energy + Delta-G solvation = -37515.788498 eV Core-core repulsion = 32998.929545 eV Total energy + Delta-G solvation = -4516.858953 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.191 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.15727 -39.06939 -38.36058 -37.08414 -36.90836 -36.86050 -36.04578 -34.48909 -32.87090 -31.58357 -31.01965 -29.91850 -28.43162 -26.99204 -25.59594 -24.57553 -24.27418 -23.27089 -23.00178 -21.41369 -20.71036 -19.73148 -18.73526 -18.63375 -18.19685 -17.49229 -17.11261 -16.95578 -16.77160 -16.59119 -16.27609 -15.86590 -15.81622 -15.67039 -15.28900 -15.03941 -14.65863 -14.56118 -14.42223 -14.08974 -13.88299 -13.83786 -13.53218 -13.37975 -13.32504 -13.22678 -13.18339 -12.90315 -12.80999 -12.71144 -12.64475 -12.52346 -12.38113 -12.32425 -12.14700 -12.04171 -12.02017 -11.92228 -11.79560 -11.48404 -11.39238 -11.16666 -10.76229 -10.55758 -10.51308 -10.41389 -9.80604 -9.60726 -8.06023 -6.17682 -0.30543 1.45026 1.47721 1.52749 1.98892 2.48114 2.57269 2.98167 3.26478 3.35526 3.46078 3.67447 3.79927 3.88300 3.97074 4.08921 4.09893 4.20331 4.28459 4.38195 4.40163 4.47551 4.50608 4.52398 4.54184 4.55851 4.57638 4.65838 4.73432 4.81118 4.83749 4.86194 4.90512 4.92566 5.01543 5.07049 5.11585 5.12787 5.24927 5.30098 5.33381 5.36174 5.39124 5.52444 5.58120 5.60624 5.70230 5.77184 5.89417 6.04748 6.25094 6.39268 6.94324 7.13561 7.50618 9.01914 Molecular weight = 376.19amu Principal moments of inertia in cm(-1) A = 0.009225 B = 0.005171 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.610083 B = 5413.734493 C = 7199.029334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.040 3.960 4 C 0.128 3.872 5 N -0.988 5.988 6 C 0.267 3.733 7 C -0.523 4.523 8 H 0.080 0.920 9 C 0.014 3.986 10 N -0.932 5.932 11 Si 0.929 3.071 12 H -0.271 1.271 13 H -0.302 1.302 14 H -0.231 1.231 15 S 2.789 3.211 16 O -1.002 7.002 17 O -1.021 7.021 18 N -0.997 5.997 19 C 0.122 3.878 20 C -0.156 4.156 21 C 0.153 3.847 22 O -0.558 6.558 23 C -0.141 4.141 24 C -0.106 4.106 25 C -0.127 4.127 26 C -0.107 4.107 27 C -0.092 4.092 28 H 0.083 0.917 29 C 0.145 3.855 30 H 0.062 0.938 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.039 0.961 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.031 0.969 38 H 0.002 0.998 39 H 0.259 0.741 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.111 0.889 44 H 0.387 0.613 45 H 0.092 0.908 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.075 0.925 49 H 0.046 0.954 50 H 0.065 0.935 51 H 0.039 0.961 52 H 0.075 0.925 53 H 0.076 0.924 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.732 14.881 5.973 18.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.038 4.038 4 C 0.002 3.998 5 N -0.828 5.828 6 C 0.143 3.857 7 C -0.562 4.562 8 H 0.098 0.902 9 C -0.185 4.185 10 N -0.573 5.573 11 Si 0.754 3.246 12 H -0.196 1.196 13 H -0.229 1.229 14 H -0.155 1.155 15 S 2.800 3.200 16 O -0.986 6.986 17 O -1.006 7.006 18 N -0.837 5.837 19 C -0.002 4.002 20 C -0.195 4.195 21 C 0.112 3.888 22 O -0.365 6.365 23 C -0.178 4.178 24 C -0.143 4.143 25 C -0.165 4.165 26 C -0.145 4.145 27 C -0.112 4.112 28 H 0.101 0.899 29 C 0.019 3.981 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.057 0.943 35 H 0.104 0.896 36 H 0.127 0.873 37 H 0.049 0.951 38 H 0.020 0.980 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.129 0.871 44 H 0.236 0.764 45 H 0.111 0.889 46 H 0.076 0.924 47 H 0.087 0.913 48 H 0.094 0.906 49 H 0.065 0.935 50 H 0.084 0.916 51 H 0.058 0.942 52 H 0.093 0.907 53 H 0.094 0.906 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.000 14.427 4.828 17.188 hybrid contribution 0.213 -0.917 0.612 1.123 sum 8.213 13.510 5.440 16.720 Atomic orbital electron populations 1.22876 0.80501 1.03110 1.00635 1.88053 1.20734 1.28509 1.95446 1.23196 0.94770 0.84719 1.01106 1.21368 0.92345 0.98719 0.87326 1.57564 1.79305 1.17583 1.28346 1.18698 0.97336 0.73978 0.95640 1.21830 1.02710 0.92095 1.39576 0.90171 1.25696 0.99604 0.97393 0.95758 1.70095 1.36613 1.03176 1.47394 0.86119 0.82130 0.76652 0.79686 1.19574 1.22897 1.15464 1.01433 0.73447 0.71937 0.73207 1.93496 1.75227 1.42744 1.87137 1.93509 1.86118 1.71962 1.48974 1.57924 1.23304 1.35780 1.66739 1.21491 0.98391 0.86393 0.93924 1.22568 0.97432 1.01529 0.97964 1.20856 0.90440 0.89687 0.87805 1.86543 1.72487 1.40648 1.36851 1.22194 0.97009 1.01026 0.97608 1.21395 0.97340 0.95798 0.99804 1.21682 0.98219 0.98462 0.98105 1.21394 0.96176 0.98442 0.98472 1.21608 0.95425 0.95876 0.98250 0.89900 1.21183 0.90103 0.91513 0.95295 0.91984 0.94228 0.89783 0.89422 0.94293 0.89561 0.87311 0.95136 0.98042 0.93217 0.89576 0.89276 0.91292 0.87105 0.76421 0.88949 0.92360 0.91326 0.90641 0.93506 0.91616 0.94230 0.90656 0.90611 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.41 -15.28 9.02 -148.98 -1.34 -16.63 16 3 C 0.04 1.28 6.28 71.98 0.45 1.73 16 4 C 0.13 4.28 5.79 86.38 0.50 4.78 16 5 N -0.99 -41.26 2.81 -519.87 -1.46 -42.72 16 6 C 0.27 13.88 5.27 85.63 0.45 14.33 16 7 C -0.52 -26.85 8.98 25.60 0.23 -26.62 16 8 H 0.08 3.78 5.52 -2.91 -0.02 3.77 16 9 C 0.01 0.77 5.46 84.66 0.46 1.23 16 10 N -0.93 -55.57 13.29 21.45 0.28 -55.29 16 11 Si 0.93 41.20 29.51 68.60 2.02 43.22 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 13 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 14 H -0.23 -9.24 5.02 99.48 0.50 -8.74 16 15 S 2.79 114.54 6.06 -56.49 -0.34 114.20 16 16 O -1.00 -39.68 15.82 -128.00 -2.03 -41.71 16 17 O -1.02 -51.45 15.41 -128.00 -1.97 -53.43 16 18 N -1.00 -33.44 3.35 -513.46 -1.72 -35.16 16 19 C 0.12 2.96 6.14 86.27 0.53 3.49 16 20 C -0.16 -3.11 5.05 30.61 0.15 -2.95 16 21 C 0.15 3.39 0.55 -10.74 -0.01 3.38 16 22 O -0.56 -10.66 10.46 -148.98 -1.56 -12.21 16 23 C -0.14 -2.70 4.90 30.59 0.15 -2.56 16 24 C -0.11 -2.14 5.78 30.59 0.18 -1.96 16 25 C -0.13 -3.40 5.87 30.59 0.18 -3.22 16 26 C -0.11 -3.23 5.03 30.60 0.15 -3.08 16 27 C -0.09 -2.88 2.01 -10.68 -0.02 -2.90 16 28 H 0.08 3.09 5.31 -2.39 -0.01 3.08 16 29 C 0.14 5.10 5.40 86.39 0.47 5.56 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 2.93 8.11 -2.39 -0.02 2.91 16 36 H 0.11 2.85 7.61 -2.39 -0.02 2.83 16 37 H 0.03 1.73 6.60 -2.39 -0.02 1.72 16 38 H 0.00 0.09 6.91 -2.39 -0.02 0.08 16 39 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 40 H 0.09 1.82 7.82 -2.39 -0.02 1.81 16 41 H 0.09 2.02 7.12 -2.38 -0.02 2.00 16 42 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.39 3.92 9.04 -74.06 -0.67 3.25 16 45 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 47 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.07 1.40 7.69 -2.39 -0.02 1.39 16 49 H 0.05 1.44 6.09 -2.39 -0.01 1.42 16 50 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 51 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 52 H 0.07 2.11 7.71 -2.39 -0.02 2.09 16 53 H 0.08 2.47 7.83 -2.39 -0.02 2.46 16 54 H 0.05 2.33 7.13 -2.39 -0.02 2.32 16 Total: -1.00 -73.79 415.02 -2.97 -76.76 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.02 Total: 29.80 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 5.13 Total: -6.83 kcal Atomic # 7 Polarization: -130.27 SS G_CDS: -2.90 Total: -133.17 kcal Atomic # 8 Polarization: -117.08 SS G_CDS: -6.90 Total: -123.98 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.02 Total: 43.22 kcal Atomic # 16 Polarization: 114.54 SS G_CDS: -0.34 Total: 114.20 kcal Total: -73.79 -2.97 -76.76 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225710362.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.849 kcal (2) G-P(sol) polarization free energy of solvation -73.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds