Wall clock time and date at job start Tue Mar 31 2020 06:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86804 * 119.99916 * 2 1 4 4 H 1.48498 * 109.46919 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47047 * 299.99995 * 3 2 1 6 6 H 1.48504 * 109.46841 * 60.00287 * 3 2 1 7 7 C 1.39882 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00428 * 196.91720 * 7 2 1 9 9 C 1.41141 * 119.99985 * 16.91964 * 7 2 1 10 10 C 1.40879 * 120.16242 * 205.25219 * 9 7 2 11 11 C 1.36357 * 119.83393 * 180.02562 * 10 9 7 12 12 C 1.39518 * 120.16468 * 0.02562 * 11 10 9 13 13 N 1.39139 * 119.83834 * 180.02562 * 12 11 10 14 14 C 1.34766 * 120.00284 * 139.28020 * 13 12 11 15 15 S 1.71199 * 120.00109 * 354.25993 * 14 13 12 16 16 N 1.34776 * 119.99907 * 174.25491 * 14 13 12 17 17 C 1.46504 * 119.99805 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.46902 * 179.97438 * 17 16 14 19 19 O 1.42903 * 109.46883 * 65.00289 * 18 17 16 20 20 C 1.35930 * 116.99912 * 179.97438 * 19 18 17 21 21 C 1.38706 * 120.05970 * 359.95854 * 20 19 18 22 22 C 1.38149 * 119.95831 * 180.02562 * 21 20 19 23 23 C 1.38279 * 120.07710 * 0.02562 * 22 21 20 24 24 C 1.38246 * 120.11866 * 0.02562 * 23 22 21 25 25 C 1.38259 * 120.04258 * 359.95609 * 24 23 22 26 26 Cl 1.73598 * 120.04006 * 180.02562 * 25 24 23 27 27 C 1.39509 * 120.32732 * 0.27022 * 12 11 10 28 28 C 1.36363 * 120.16446 * 359.44780 * 27 12 11 29 29 H 0.96993 * 119.99950 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.08354 * 359.97438 * 10 9 7 31 31 H 1.07998 * 119.92284 * 179.97438 * 11 10 9 32 32 H 0.97008 * 119.99437 * 319.28321 * 13 12 11 33 33 H 0.97001 * 120.00178 * 0.02562 * 16 14 13 34 34 H 1.09004 * 109.47420 * 60.00349 * 17 16 14 35 35 H 1.08997 * 109.47201 * 300.00118 * 17 16 14 36 36 H 1.08996 * 109.47877 * 305.00333 * 18 17 16 37 37 H 1.09004 * 109.46826 * 184.99756 * 18 17 16 38 38 H 1.08005 * 120.01861 * 0.03905 * 21 20 19 39 39 H 1.08000 * 119.96262 * 180.29595 * 22 21 20 40 40 H 1.07997 * 119.94461 * 180.02562 * 23 22 21 41 41 H 1.07994 * 119.98380 * 179.97438 * 24 23 22 42 42 H 1.07994 * 119.92036 * 179.71029 * 27 12 11 43 43 H 1.07998 * 120.08785 * 180.27254 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8841 2.3965 -1.2125 6 1 1.8841 2.3964 1.2126 7 6 2.0083 -1.2114 -0.0005 8 1 3.0533 -1.2318 0.2716 9 6 1.3485 -2.4071 -0.3568 10 6 1.8201 -3.6454 0.1217 11 6 1.1778 -4.7965 -0.2272 12 6 0.0566 -4.7502 -1.0562 13 7 -0.5939 -5.9289 -1.4074 14 6 -1.9405 -5.9703 -1.4442 15 16 -2.8531 -4.6207 -0.9183 16 7 -2.5686 -7.0742 -1.8951 17 6 -4.0324 -7.1190 -1.9356 18 6 -4.4862 -8.4732 -2.4845 19 8 -4.1013 -9.5080 -1.5773 20 6 -4.4319 -10.7817 -1.9179 21 6 -5.1133 -11.0301 -3.1003 22 6 -5.4486 -12.3254 -3.4442 23 6 -5.1063 -13.3745 -2.6108 24 6 -4.4281 -13.1304 -1.4312 25 6 -4.0896 -11.8361 -1.0823 26 17 -3.2374 -11.5298 0.3987 27 6 -0.4126 -3.5282 -1.5389 28 6 0.2160 -2.3683 -1.1939 29 1 -0.4850 0.8400 0.0004 30 1 2.6886 -3.6830 0.7625 31 1 1.5383 -5.7467 0.1385 32 1 -0.0781 -6.7210 -1.6258 33 1 -2.0516 -7.8390 -2.1928 34 1 -4.4026 -6.3230 -2.5817 35 1 -4.4281 -6.9835 -0.9290 36 1 -4.0191 -8.6474 -3.4537 37 1 -5.5703 -8.4743 -2.5981 38 1 -5.3812 -10.2114 -3.7517 39 1 -5.9750 -12.5194 -4.3671 40 1 -5.3692 -14.3862 -2.8820 41 1 -4.1622 -13.9513 -0.7818 42 1 -1.2782 -3.5004 -2.1840 43 1 -0.1508 -1.4227 -1.5647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225779804.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:24 Heat of formation + Delta-G solvation = 28.730325 kcal Electronic energy + Delta-G solvation = -27234.030449 eV Core-core repulsion = 23203.598362 eV Total energy + Delta-G solvation = -4030.432088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 376.075 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.73021 -39.15970 -38.21296 -37.14057 -36.69096 -35.09058 -33.22068 -31.41634 -31.01687 -29.69782 -29.51022 -28.62075 -25.25932 -24.14843 -23.47154 -22.99239 -22.17160 -21.16337 -20.50789 -18.98634 -18.10698 -17.49265 -17.32470 -16.85192 -16.45766 -16.35215 -15.39720 -15.21053 -15.02172 -14.81838 -14.70592 -14.40140 -13.96929 -13.85962 -13.49997 -13.37046 -12.73442 -12.55439 -12.34845 -12.20521 -12.08615 -11.90572 -11.77662 -11.61108 -11.52830 -11.24348 -11.14177 -11.08653 -10.84382 -10.56300 -10.45701 -9.86684 -9.64233 -9.41456 -9.34014 -8.85479 -8.69374 -7.67125 -7.37194 -7.00871 -6.77793 -6.25699 -4.31400 0.62081 0.79834 1.74743 1.82624 2.43285 2.57857 2.82709 3.03982 3.09100 3.10787 3.13907 3.17011 3.27323 3.93144 3.99366 4.14420 4.25765 4.45309 4.52227 4.57557 4.64089 4.73517 4.78767 4.90752 5.17610 5.38979 5.53342 5.62448 5.67512 5.72181 5.88055 6.08726 6.10631 6.25267 6.38258 6.57424 6.75839 6.99698 7.05387 7.12789 7.23414 7.31968 7.62138 7.68601 7.96215 8.07557 8.21539 8.29289 8.65612 8.88169 8.98692 10.17682 Molecular weight = 376.08amu Principal moments of inertia in cm(-1) A = 0.022812 B = 0.001627 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.125581 B =17205.079939 C =17859.854059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.452 4.452 8 H 0.080 0.920 9 C 0.119 3.881 10 C -0.225 4.225 11 C -0.081 4.081 12 C -0.038 4.038 13 N -0.590 5.590 14 C 0.542 3.458 15 S -0.636 6.636 16 N -0.698 5.698 17 C 0.137 3.863 18 C 0.043 3.957 19 O -0.300 6.300 20 C 0.141 3.859 21 C -0.200 4.200 22 C -0.075 4.075 23 C -0.148 4.148 24 C -0.074 4.074 25 C -0.071 4.071 26 Cl -0.052 7.052 27 C -0.038 4.038 28 C -0.165 4.165 29 H 0.283 0.717 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.390 0.610 33 H 0.393 0.607 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.111 0.889 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.236 -24.783 -8.873 28.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.147 4.147 3 Si 0.732 3.268 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.481 4.481 8 H 0.098 0.902 9 C 0.116 3.884 10 C -0.246 4.246 11 C -0.102 4.102 12 C -0.131 4.131 13 N -0.209 5.209 14 C 0.184 3.816 15 S -0.508 6.508 16 N -0.331 5.331 17 C 0.012 3.988 18 C -0.033 4.033 19 O -0.213 6.213 20 C 0.094 3.906 21 C -0.219 4.219 22 C -0.094 4.094 23 C -0.167 4.167 24 C -0.092 4.092 25 C -0.099 4.099 26 Cl -0.024 7.024 27 C -0.060 4.060 28 C -0.185 4.185 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.225 0.775 33 H 0.228 0.772 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.157 0.843 42 H 0.129 0.871 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.983 -23.526 -8.178 27.221 hybrid contribution 1.122 -0.739 -0.388 1.399 sum -9.861 -24.266 -8.566 27.558 Atomic orbital electron populations 1.69895 1.07507 1.29411 1.32997 1.25986 0.94764 1.01455 0.92470 0.86265 0.80916 0.80942 0.78651 1.18370 1.19620 1.19922 1.19647 0.97832 0.91235 1.39377 0.90232 1.17728 0.90866 0.91960 0.87866 1.20467 1.04278 0.92393 1.07457 1.19997 0.96107 0.97138 0.96921 1.16904 1.00400 0.83689 1.12114 1.41976 1.02363 1.13966 1.62567 1.22376 0.86074 0.90096 0.83062 1.93422 1.62675 1.28130 1.66555 1.44690 1.07830 1.15080 1.65512 1.21637 0.78373 0.93761 1.04995 1.23327 1.01263 0.85933 0.92737 1.86255 1.75243 1.12337 1.47452 1.18707 0.94750 0.84275 0.92873 1.21277 1.04414 0.98939 0.97224 1.21075 0.97252 0.91798 0.99233 1.21054 1.01107 0.99790 0.94707 1.20972 0.96897 0.94235 0.97121 1.20287 1.05208 0.92949 0.91421 1.98401 1.75544 1.96204 1.32202 1.20503 0.96534 0.91079 0.97850 1.20870 0.99234 0.96645 1.01773 0.90622 0.88635 0.89531 0.77484 0.77163 0.87497 0.88571 0.91042 0.89445 0.84474 0.85078 0.84933 0.84322 0.87143 0.86192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.50 10.95 55.54 0.61 -19.89 16 2 C 0.07 1.84 5.15 -17.34 -0.09 1.75 16 3 Si 0.91 18.60 29.59 -169.99 -5.03 13.57 16 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.45 -11.91 9.04 -37.87 -0.34 -12.25 16 8 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 9 C 0.12 3.17 5.57 -106.80 -0.59 2.58 16 10 C -0.23 -5.47 9.74 -39.26 -0.38 -5.85 16 11 C -0.08 -1.78 9.90 -39.78 -0.39 -2.18 16 12 C -0.04 -0.84 5.94 -83.59 -0.50 -1.34 16 13 N -0.59 -10.18 5.29 -11.28 -0.06 -10.24 16 14 C 0.54 9.34 7.73 -86.93 -0.67 8.67 16 15 S -0.64 -14.28 24.96 -107.50 -2.68 -16.96 16 16 N -0.70 -8.38 5.51 -62.03 -0.34 -8.72 16 17 C 0.14 1.39 5.51 -4.04 -0.02 1.37 16 18 C 0.04 0.30 4.87 37.16 0.18 0.48 16 19 O -0.30 -2.82 9.54 -19.52 -0.19 -3.00 16 20 C 0.14 1.23 6.68 -39.20 -0.26 0.97 16 21 C -0.20 -1.30 9.04 -39.44 -0.36 -1.65 16 22 C -0.08 -0.41 10.04 -39.60 -0.40 -0.81 16 23 C -0.15 -0.82 10.04 -39.56 -0.40 -1.21 16 24 C -0.07 -0.51 9.83 -39.57 -0.39 -0.90 16 25 C -0.07 -0.65 6.33 -39.36 -0.25 -0.90 16 26 Cl -0.05 -0.54 28.50 -51.86 -1.48 -2.02 16 27 C -0.04 -0.93 7.76 -39.78 -0.31 -1.24 16 28 C -0.16 -4.38 8.63 -39.26 -0.34 -4.72 16 29 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 30 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 31 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.39 5.20 8.84 -40.82 -0.36 4.84 16 33 H 0.39 3.71 8.49 -40.82 -0.35 3.36 16 34 H 0.11 1.10 7.99 -51.93 -0.42 0.69 16 35 H 0.10 1.19 7.99 -51.93 -0.41 0.77 16 36 H 0.07 0.37 7.66 -51.93 -0.40 -0.02 16 37 H 0.09 0.44 7.66 -51.93 -0.40 0.04 16 38 H 0.14 0.62 6.30 -52.48 -0.33 0.29 16 39 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 40 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 41 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.11 2.71 6.16 -47.14 -0.29 2.42 16 43 H 0.12 3.33 6.17 -52.49 -0.32 3.01 16 LS Contribution 391.24 15.07 5.90 5.90 Total: -1.00 -33.24 391.24 -13.73 -46.97 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -4.94 Total: 11.63 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -5.51 Total: -17.23 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.21 Total: -38.85 kcal Atomic # 8 Polarization: -2.82 SS G_CDS: -0.19 Total: -3.00 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Atomic # 16 Polarization: -14.28 SS G_CDS: -2.68 Total: -16.96 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.48 Total: -2.02 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.24 -13.73 -46.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225779804.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.703 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds