Wall clock time and date at job start Tue Mar 31 2020 05:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47312 * 2 1 4 4 C 1.46503 * 120.00255 * 270.00616 * 3 2 1 5 5 C 1.50699 * 109.46840 * 269.99814 * 4 3 2 6 6 H 1.07998 * 120.00073 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00177 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99503 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00466 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47114 * 89.99563 * 9 7 5 11 11 H 1.48492 * 109.47338 * 209.99771 * 9 7 5 12 12 H 1.48501 * 109.46876 * 329.99945 * 9 7 5 13 13 C 1.39696 * 119.99830 * 90.00074 * 3 2 1 14 14 C 1.38978 * 119.99055 * 0.02562 * 13 3 2 15 15 C 1.37949 * 120.01361 * 179.97438 * 14 13 3 16 16 C 1.39075 * 119.98624 * 0.02562 * 15 14 13 17 17 N 1.39455 * 120.00825 * 179.97438 * 16 15 14 18 18 N 1.28992 * 119.99952 * 179.97438 * 17 16 15 19 19 C 1.32141 * 120.00361 * 185.21631 * 18 17 16 20 20 C 1.47037 * 120.88940 * 7.07133 * 19 18 17 21 21 O 1.22103 * 120.13099 * 0.03993 * 20 19 18 22 22 C 1.41129 * 119.73112 * 179.80211 * 20 19 18 23 23 C 1.34960 * 121.71804 * 0.48360 * 22 20 19 24 24 C 1.45867 * 121.42343 * 359.48233 * 23 22 20 25 25 C 1.40118 * 120.78562 * 180.25552 * 24 23 22 26 26 C 1.36539 * 119.87815 * 180.02562 * 25 24 23 27 27 C 1.38878 * 120.87852 * 359.97438 * 26 25 24 28 28 C 1.37788 * 120.56761 * 359.97438 * 27 26 25 29 29 C 1.39425 * 119.56783 * 0.02562 * 28 27 26 30 30 C 1.39071 * 119.97955 * 0.27341 * 16 15 14 31 31 C 1.37951 * 119.98642 * 359.46407 * 30 16 15 32 32 H 1.09004 * 109.47130 * 299.99648 * 1 2 3 33 33 H 1.08994 * 109.47165 * 59.99700 * 1 2 3 34 34 H 1.09006 * 109.47252 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.47130 * 240.00352 * 2 1 3 36 36 H 1.08998 * 109.47592 * 120.00502 * 2 1 3 37 37 H 1.08999 * 109.47152 * 29.99501 * 4 3 2 38 38 H 1.08994 * 109.47104 * 149.99787 * 4 3 2 39 39 H 0.96997 * 119.99400 * 180.02562 * 8 7 5 40 40 H 1.08005 * 119.99940 * 359.97438 * 14 13 3 41 41 H 1.08005 * 120.00592 * 179.97438 * 15 14 13 42 42 H 0.97004 * 119.99826 * 0.02562 * 17 16 15 43 43 H 1.08007 * 119.14059 * 180.26715 * 22 20 19 44 44 H 1.08001 * 119.28463 * 179.76969 * 23 22 20 45 45 H 1.08004 * 120.06671 * 0.02562 * 25 24 23 46 46 H 1.08000 * 119.56209 * 180.02562 * 26 25 24 47 47 H 1.08001 * 119.71540 * 180.02562 * 27 26 25 48 48 H 1.08006 * 120.22372 * 180.02562 * 28 27 26 49 49 H 1.08004 * 120.00149 * 179.73027 * 30 16 15 50 50 H 1.07997 * 119.99005 * 180.25239 * 31 30 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3427 1.2309 -1.0959 7 6 4.1493 2.3906 -2.8775 8 7 3.3492 3.1268 -3.6175 9 14 5.9136 2.0977 -3.4165 10 1 5.9774 0.8770 -4.2598 11 1 6.3925 3.2654 -4.1989 12 1 6.7735 1.9177 -2.2192 13 6 2.2512 2.0397 1.2098 14 6 2.0200 1.3841 2.4133 15 6 2.2502 2.0337 3.6082 16 6 2.7134 3.3451 3.6085 17 7 2.9458 4.0024 4.8163 18 7 3.3758 5.2186 4.8163 19 6 3.6942 5.8068 5.9559 20 6 3.7141 5.0499 7.2164 21 8 3.4351 3.8612 7.2219 22 6 4.0618 5.7018 8.4188 23 6 4.3709 7.0151 8.4502 24 6 4.3716 7.8254 7.2373 25 6 4.6999 9.1868 7.2845 26 6 4.6942 9.9280 6.1378 27 6 4.3668 9.3510 4.9178 28 6 4.0407 8.0145 4.8397 29 6 4.0398 7.2378 5.9976 30 6 2.9387 4.0028 2.4040 31 6 2.7132 3.3504 1.2096 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5139 0.8899 37 1 1.5816 1.6878 -2.0284 38 1 2.0955 3.1410 -1.1383 39 1 3.6753 3.5173 -4.4434 40 1 1.6599 0.3659 2.4131 41 1 2.0701 1.5243 4.5434 42 1 2.7848 3.5449 5.6563 43 1 4.0775 5.1356 9.3385 44 1 4.6277 7.4750 9.3931 45 1 4.9570 9.6491 8.2262 46 1 4.9485 10.9768 6.1801 47 1 4.3687 9.9548 4.0223 48 1 3.7874 7.5714 3.8879 49 1 3.2941 5.0226 2.4038 50 1 2.8920 3.8598 0.2742 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252428665.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:59 Heat of formation + Delta-G solvation = 92.105720 kcal Electronic energy + Delta-G solvation = -32332.636603 eV Core-core repulsion = 28098.184414 eV Total energy + Delta-G solvation = -4234.452189 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.169 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.08410 -39.64915 -38.92802 -37.92253 -35.87856 -34.98902 -33.08026 -32.85538 -31.30126 -30.59039 -30.00687 -29.73181 -28.15216 -26.54806 -25.39740 -23.81446 -23.39651 -22.78615 -22.25893 -22.20985 -21.06136 -19.90208 -18.67432 -18.14538 -17.25648 -16.90919 -16.61103 -16.20911 -15.86458 -15.36285 -15.25143 -14.94560 -14.47292 -14.44711 -14.28398 -14.09705 -13.88805 -13.69164 -13.46209 -13.35074 -13.16097 -12.94350 -12.83896 -12.80896 -12.28815 -12.15550 -12.02633 -11.94758 -11.58245 -11.46736 -11.31451 -11.28676 -11.03931 -10.82230 -10.64997 -10.64155 -10.39616 -10.30154 -9.95118 -9.71994 -9.32594 -9.05240 -8.60083 -8.55408 -8.54809 -7.84492 -6.42256 -6.05531 -4.24131 -0.21932 0.89349 1.35559 1.82960 1.85642 2.39582 2.75164 3.07448 3.22628 3.30152 3.34362 3.90241 3.94648 4.04970 4.30919 4.36774 4.39430 4.50657 4.58779 4.78544 4.92127 4.99009 5.14782 5.15739 5.18983 5.26583 5.35503 5.43201 5.59395 5.66679 5.68874 5.73198 5.74794 5.78238 5.85695 5.90503 6.01150 6.03777 6.08124 6.22607 6.26783 6.31799 6.38030 6.39711 6.46713 6.53140 6.71899 6.73845 6.80012 7.00390 7.04544 7.24584 7.36333 7.45461 7.74126 8.06248 8.13244 8.22629 8.31706 8.84394 9.43210 10.89254 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.009683 B = 0.002147 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2891.016656 B =13039.617276 C =15004.900748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.118 3.882 3 N -0.602 5.602 4 C 0.248 3.752 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.241 3.759 14 C -0.197 4.197 15 C -0.082 4.082 16 C 0.039 3.961 17 N -0.418 5.418 18 N -0.101 5.101 19 C -0.112 4.112 20 C 0.401 3.599 21 O -0.514 6.514 22 C -0.233 4.233 23 C -0.005 4.005 24 C -0.102 4.102 25 C -0.082 4.082 26 C -0.138 4.138 27 C -0.094 4.094 28 C -0.110 4.110 29 C 0.043 3.957 30 C -0.069 4.069 31 C -0.167 4.167 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.032 0.968 38 H 0.037 0.963 39 H 0.265 0.735 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.411 0.589 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.128 0.872 46 H 0.123 0.877 47 H 0.127 0.873 48 H 0.137 0.863 49 H 0.129 0.871 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.406 8.539 20.574 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.006 4.006 3 N -0.305 5.305 4 C 0.128 3.872 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.723 3.277 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.132 3.868 14 C -0.221 4.221 15 C -0.104 4.104 16 C -0.057 4.057 17 N -0.163 5.163 18 N 0.057 4.943 19 C -0.275 4.275 20 C 0.292 3.708 21 O -0.396 6.396 22 C -0.252 4.252 23 C -0.024 4.024 24 C -0.104 4.104 25 C -0.100 4.100 26 C -0.156 4.156 27 C -0.112 4.112 28 C -0.130 4.130 29 C 0.040 3.960 30 C -0.090 4.090 31 C -0.190 4.190 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.143 0.857 41 H 0.137 0.863 42 H 0.266 0.734 43 H 0.155 0.845 44 H 0.151 0.849 45 H 0.145 0.855 46 H 0.141 0.859 47 H 0.145 0.855 48 H 0.154 0.846 49 H 0.147 0.853 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.648 7.975 19.281 20.930 hybrid contribution 1.030 -0.474 0.711 1.339 sum -0.618 7.500 19.992 21.362 Atomic orbital electron populations 1.22223 0.97138 1.01127 1.02297 1.21301 0.93195 0.83901 1.02248 1.47310 1.66431 1.12319 1.04465 1.19333 0.96290 0.92890 0.78677 1.21550 0.96929 1.32224 1.06546 0.92191 1.24953 0.97899 0.94839 0.96271 1.69926 1.35723 1.33243 1.14332 0.86525 0.84599 0.77799 0.78750 1.20617 1.21044 1.19765 1.18048 0.91042 0.91431 0.86274 1.20371 1.10812 1.00604 0.90345 1.20302 1.00014 0.91964 0.98163 1.17455 1.11422 0.93196 0.83665 1.44170 1.52026 1.08997 1.11129 1.71355 0.98114 0.97462 1.27381 1.21995 1.19820 0.95631 0.90046 1.19332 0.74948 0.87289 0.89273 1.90351 1.44297 1.17226 1.87726 1.22200 1.07273 0.96292 0.99468 1.22202 0.90169 0.93199 0.96867 1.18782 1.05320 0.94140 0.92181 1.20930 0.98068 0.92199 0.98813 1.20814 1.01987 1.00196 0.92653 1.21295 0.97096 0.94838 0.97992 1.21216 1.00001 0.93614 0.98179 1.18136 0.95739 0.89133 0.92962 1.20623 0.98737 0.99714 0.89946 1.20837 1.05476 0.94179 0.98510 0.92812 0.92342 0.92507 0.90432 0.91808 0.94952 0.94536 0.92572 0.85698 0.86305 0.73440 0.84526 0.84859 0.85455 0.85862 0.85522 0.84560 0.85269 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.24 37.15 0.38 -1.97 16 2 C 0.12 1.90 5.88 -4.05 -0.02 1.88 16 3 N -0.60 -11.79 2.59 -173.07 -0.45 -12.24 16 4 C 0.25 5.83 4.91 -5.19 -0.03 5.80 16 5 C -0.53 -13.93 9.39 -34.44 -0.32 -14.25 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -24.83 13.29 55.43 0.74 -24.09 16 9 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 C 0.24 4.49 6.56 -83.72 -0.55 3.95 16 14 C -0.20 -3.15 9.20 -39.41 -0.36 -3.51 16 15 C -0.08 -1.24 9.89 -39.38 -0.39 -1.63 16 16 C 0.04 0.63 6.70 -83.77 -0.56 0.06 16 17 N -0.42 -6.51 5.89 32.43 0.19 -6.32 16 18 N -0.10 -1.55 9.25 34.55 0.32 -1.23 16 19 C -0.11 -1.58 7.02 -80.50 -0.56 -2.15 16 20 C 0.40 5.61 6.88 -34.92 -0.24 5.37 16 21 O -0.51 -8.20 14.39 4.82 0.07 -8.14 16 22 C -0.23 -2.47 9.83 -39.65 -0.39 -2.86 16 23 C 0.00 -0.04 9.87 -37.70 -0.37 -0.41 16 24 C -0.10 -1.02 5.88 -105.04 -0.62 -1.64 16 25 C -0.08 -0.64 9.77 -39.49 -0.39 -1.03 16 26 C -0.14 -1.07 9.95 -39.96 -0.40 -1.47 16 27 C -0.09 -0.84 10.02 -39.51 -0.40 -1.24 16 28 C -0.11 -1.24 9.63 -39.30 -0.38 -1.62 16 29 C 0.04 0.52 5.90 -104.68 -0.62 -0.10 16 30 C -0.07 -1.18 9.47 -39.38 -0.37 -1.55 16 31 C -0.17 -3.17 9.20 -39.41 -0.36 -3.53 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 36 H 0.06 0.92 6.19 -51.93 -0.32 0.60 16 37 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 38 H 0.04 0.91 6.19 -51.93 -0.32 0.59 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 40 H 0.13 1.75 6.13 -52.48 -0.32 1.42 16 41 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 42 H 0.41 6.32 4.97 -191.53 -0.95 5.37 16 43 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 44 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 46 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 47 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 48 H 0.14 1.56 7.68 -52.48 -0.40 1.15 16 49 H 0.13 2.07 7.39 -52.48 -0.39 1.68 16 50 H 0.14 2.94 6.13 -52.49 -0.32 2.61 16 LS Contribution 417.61 15.07 6.29 6.29 Total: -1.00 -29.72 417.61 -12.13 -41.85 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -7.22 Total: 8.38 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -7.05 Total: -20.30 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.80 Total: -43.89 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.07 Total: -8.14 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -29.72 -12.13 -41.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252428665.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.952 kcal (2) G-P(sol) polarization free energy of solvation -29.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds