Wall clock time and date at job start Tue Mar 31 2020 05:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99938 * 2 1 4 4 C 1.53007 * 109.46939 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46767 * 65.00519 * 4 3 2 6 6 C 1.46501 * 119.99576 * 273.26274 * 5 4 3 7 7 C 1.50693 * 109.47069 * 86.41347 * 6 5 4 8 8 H 1.07998 * 120.00132 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99952 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00202 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00125 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.46919 * 89.99679 * 11 9 7 13 13 H 1.48496 * 109.47142 * 209.99917 * 11 9 7 14 14 H 1.48495 * 109.47072 * 330.00134 * 11 9 7 15 15 S 1.65596 * 120.00151 * 93.54484 * 5 4 3 16 16 O 1.42102 * 106.40060 * 195.57546 * 15 5 4 17 17 O 1.42098 * 106.40134 * 328.48880 * 15 5 4 18 18 N 1.65601 * 107.22066 * 82.03193 * 15 5 4 19 19 C 1.47294 * 121.64813 * 274.13188 * 18 15 5 20 20 C 1.50347 * 109.61815 * 140.20021 * 19 18 15 21 21 O 1.21280 * 118.25068 * 190.48854 * 20 19 18 22 22 N 1.33823 * 123.48706 * 10.46716 * 20 19 18 23 23 C 1.45128 * 123.13378 * 354.13341 * 22 20 19 24 24 H 1.08999 * 108.34503 * 268.17197 * 23 22 20 25 25 C 1.52532 * 112.63942 * 148.35168 * 23 22 20 26 26 C 1.53292 * 108.66111 * 175.62940 * 25 23 22 27 27 C 1.52856 * 110.15390 * 59.01193 * 26 25 23 28 28 C 1.53268 * 110.18199 * 301.56458 * 27 26 25 29 29 C 1.46724 * 121.65046 * 93.84597 * 18 15 5 30 30 H 1.08996 * 109.47246 * 122.52035 * 29 18 15 31 31 H 1.08998 * 109.47179 * 299.99498 * 1 2 3 32 32 H 1.08997 * 109.46829 * 59.99953 * 1 2 3 33 33 H 1.09004 * 109.46989 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46972 * 60.00321 * 3 2 1 35 35 H 1.08996 * 109.47314 * 300.00409 * 3 2 1 36 36 H 1.09004 * 109.47240 * 305.00125 * 4 3 2 37 37 H 1.09001 * 109.46613 * 185.00040 * 4 3 2 38 38 H 1.08997 * 109.47016 * 206.41283 * 6 5 4 39 39 H 1.09004 * 109.47476 * 326.40672 * 6 5 4 40 40 H 0.96993 * 120.00621 * 179.97438 * 10 9 7 41 41 H 1.08997 * 109.44153 * 260.24430 * 19 18 15 42 42 H 1.08991 * 109.44519 * 20.15417 * 19 18 15 43 43 H 0.96998 * 118.43595 * 174.15404 * 22 20 19 44 44 H 1.08997 * 109.60453 * 295.38043 * 25 23 22 45 45 H 1.08997 * 109.60909 * 55.71384 * 25 23 22 46 46 H 1.09003 * 109.35842 * 179.22202 * 26 25 23 47 47 H 1.09005 * 109.35786 * 298.80708 * 26 25 23 48 48 H 1.09006 * 109.34865 * 61.78142 * 27 26 25 49 49 H 1.08996 * 109.35043 * 181.48453 * 27 26 25 50 50 H 1.08997 * 109.60713 * 178.95818 * 28 27 26 51 51 H 1.09008 * 109.60719 * 299.45686 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5640 -1.2510 6 6 4.0376 -0.8954 -1.3631 7 6 2.6894 -1.4239 -1.7801 8 1 1.8691 -0.7411 -1.9446 9 6 2.5032 -2.7793 -1.9515 10 7 1.3265 -3.2406 -2.3149 11 14 3.9223 -3.9603 -1.6675 12 1 3.9297 -4.3927 -0.2468 13 1 3.7617 -5.1472 -2.5454 14 1 5.2036 -3.2799 -1.9845 15 16 4.4130 1.5123 -2.5365 16 8 4.4298 0.6619 -3.6749 17 8 3.6184 2.6876 -2.4562 18 7 5.9791 1.9884 -2.2853 19 6 6.3055 3.1781 -1.4806 20 6 7.5143 2.8972 -0.6317 21 8 7.8067 3.6958 0.2329 22 7 8.2843 1.8127 -0.7793 23 6 7.9643 0.7309 -1.6923 24 1 7.3881 -0.0177 -1.1486 25 6 9.2080 0.0573 -2.2633 26 6 8.7698 -1.1336 -3.1233 27 6 7.8561 -0.6592 -4.2532 28 6 6.6271 0.0519 -3.6763 29 6 7.1103 1.2425 -2.8482 30 1 7.7078 1.9058 -3.4735 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6886 1.8463 0.8900 35 1 1.6886 1.8464 -0.8899 36 1 3.8508 0.5685 0.8427 37 1 3.9784 2.1766 0.0902 38 1 4.7827 -1.1716 -2.1091 39 1 4.3132 -1.3228 -0.3989 40 1 1.1955 -4.1940 -2.4358 41 1 6.5145 4.0180 -2.1430 42 1 5.4603 3.4247 -0.8381 43 1 9.0948 1.7463 -0.2506 44 1 9.7598 0.7687 -2.8777 45 1 9.8423 -0.2910 -1.4481 46 1 9.6501 -1.6155 -3.5487 47 1 8.2331 -1.8502 -2.5015 48 1 8.4041 0.0304 -4.8954 49 1 7.5314 -1.5185 -4.8400 50 1 5.9918 0.4022 -4.4897 51 1 6.0685 -0.6383 -3.0438 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252494271.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:28 Heat of formation + Delta-G solvation = -124.136857 kcal Electronic energy + Delta-G solvation = -36864.583267 eV Core-core repulsion = 32313.056033 eV Total energy + Delta-G solvation = -4551.527234 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.171 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.81406 -38.62299 -37.49104 -36.88463 -35.45413 -35.32137 -35.27314 -34.36229 -32.36802 -30.31141 -29.63877 -29.50657 -27.07568 -26.49147 -25.31732 -23.33051 -22.93744 -22.39719 -21.72450 -20.50986 -19.94187 -18.58876 -17.49434 -17.38551 -17.10736 -16.92509 -16.53243 -15.75957 -15.63899 -15.42146 -15.11534 -14.92616 -14.53039 -14.33178 -14.23112 -14.12115 -14.03777 -13.62324 -13.44787 -13.27357 -12.75906 -12.60847 -12.54095 -12.34817 -12.27837 -12.00571 -11.91489 -11.70619 -11.56424 -11.50662 -11.38631 -11.30736 -11.07479 -10.86834 -10.74499 -10.66243 -10.39835 -10.32337 -10.17898 -10.10497 -9.75998 -9.41715 -9.37694 -9.02823 -8.64633 -8.42480 -8.15848 -5.92412 -3.84593 0.87618 2.37758 2.93821 3.15852 3.31045 3.34972 3.39450 3.81225 4.13683 4.39579 4.46594 4.49143 4.53474 4.58211 4.76639 4.80308 4.93531 5.06129 5.14041 5.17202 5.22415 5.24921 5.33792 5.41462 5.47521 5.57772 5.65642 5.71677 5.73640 5.80929 5.85387 5.90699 5.98223 5.99772 6.08795 6.12169 6.22543 6.29588 6.34041 6.41647 6.56286 6.56915 6.65725 6.83787 7.07610 7.13253 7.33319 7.70877 7.97081 8.04917 8.65773 9.23188 9.67541 11.21517 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.009306 B = 0.005231 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.121697 B = 5351.814824 C = 7018.519325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.333 6.333 3 C 0.039 3.961 4 C 0.138 3.862 5 N -0.979 5.979 6 C 0.227 3.773 7 C -0.492 4.492 8 H 0.092 0.908 9 C 0.071 3.929 10 N -0.901 5.901 11 Si 0.862 3.138 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.267 1.267 15 S 2.775 3.225 16 O -0.946 6.946 17 O -0.986 6.986 18 N -1.015 6.015 19 C 0.116 3.884 20 C 0.518 3.482 21 O -0.553 6.553 22 N -0.707 5.707 23 C 0.120 3.880 24 H 0.079 0.921 25 C -0.121 4.121 26 C -0.122 4.122 27 C -0.119 4.119 28 C -0.155 4.155 29 C 0.148 3.852 30 H 0.084 0.916 31 H 0.020 0.980 32 H 0.031 0.969 33 H 0.086 0.914 34 H 0.041 0.959 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.035 0.965 39 H 0.025 0.975 40 H 0.259 0.741 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.399 0.601 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.062 0.938 49 H 0.074 0.926 50 H 0.127 0.873 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.029 8.080 0.945 16.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.250 6.250 3 C -0.040 4.040 4 C 0.011 3.989 5 N -0.820 5.820 6 C 0.105 3.895 7 C -0.531 4.531 8 H 0.110 0.890 9 C -0.130 4.130 10 N -0.541 5.541 11 Si 0.690 3.310 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.192 1.192 15 S 2.785 3.215 16 O -0.930 6.930 17 O -0.969 6.969 18 N -0.853 5.853 19 C -0.013 4.013 20 C 0.303 3.697 21 O -0.430 6.430 22 N -0.358 5.358 23 C 0.013 3.987 24 H 0.097 0.903 25 C -0.160 4.160 26 C -0.160 4.160 27 C -0.157 4.157 28 C -0.193 4.193 29 C 0.041 3.959 30 H 0.102 0.898 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.124 0.876 42 H 0.134 0.866 43 H 0.235 0.765 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.081 0.919 49 H 0.093 0.907 50 H 0.145 0.855 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.416 8.426 0.487 15.850 hybrid contribution 0.974 -0.762 0.834 1.492 sum 14.391 7.664 1.320 16.357 Atomic orbital electron populations 1.22570 0.82904 1.02577 0.97753 1.88480 1.17839 1.24057 1.94674 1.22895 0.94407 0.87193 0.99537 1.21111 0.93305 0.96689 0.87796 1.57559 1.78538 1.18265 1.27675 1.19587 0.99065 0.74035 0.96858 1.21382 0.95401 0.92932 1.43403 0.89020 1.24768 0.95029 0.97763 0.95438 1.69863 1.22095 1.13446 1.48694 0.87098 0.83997 0.81760 0.78176 1.20582 1.21348 1.19199 1.02429 0.71918 0.72906 0.74223 1.93661 1.85347 1.66624 1.47340 1.93550 1.66307 1.49825 1.87260 1.58949 1.24851 1.36368 1.65176 1.21461 0.96768 0.89074 0.93991 1.20412 0.84804 0.80701 0.83766 1.90782 1.72074 1.46118 1.34064 1.45380 1.26969 1.20382 1.43113 1.21204 0.97240 0.89101 0.91175 0.90283 1.21764 0.96125 0.98127 0.99989 1.21586 0.99913 0.97031 0.97445 1.21607 0.95678 1.00781 0.97616 1.22849 0.98144 0.95642 1.02684 1.21221 0.87049 0.94202 0.93424 0.89754 0.96179 0.95057 0.89569 0.94073 0.93152 0.89896 0.91082 0.94727 0.95662 0.93049 0.87593 0.86614 0.76494 0.90974 0.90961 0.91243 0.91220 0.91881 0.90717 0.85480 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.97 101.05 1.11 1.84 16 2 O -0.33 -7.06 6.79 -35.23 -0.24 -7.30 16 3 C 0.04 0.69 6.27 37.16 0.23 0.92 16 4 C 0.14 2.26 5.78 -4.04 -0.02 2.23 16 5 N -0.98 -18.40 2.84 -115.66 -0.33 -18.73 16 6 C 0.23 4.97 4.13 -5.20 -0.02 4.95 16 7 C -0.49 -13.09 7.91 -34.44 -0.27 -13.36 16 8 H 0.09 2.69 6.50 -52.49 -0.34 2.35 16 9 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 10 N -0.90 -26.70 13.96 55.43 0.77 -25.93 16 11 Si 0.86 20.43 27.47 -169.99 -4.67 15.76 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.27 -5.81 6.54 56.52 0.37 -5.44 16 15 S 2.77 49.54 5.71 -107.50 -0.61 48.93 16 16 O -0.95 -19.13 11.83 -57.17 -0.68 -19.81 16 17 O -0.99 -19.08 16.22 -57.17 -0.93 -20.00 16 18 N -1.02 -13.68 3.38 -108.33 -0.37 -14.04 16 19 C 0.12 1.39 6.36 -4.93 -0.03 1.35 16 20 C 0.52 6.51 7.81 -11.58 -0.09 6.41 16 21 O -0.55 -8.60 17.80 5.56 0.10 -8.50 16 22 N -0.71 -7.35 5.27 -55.49 -0.29 -7.65 16 23 C 0.12 1.23 2.83 -69.13 -0.20 1.03 16 24 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 25 C -0.12 -0.96 5.63 -26.82 -0.15 -1.11 16 26 C -0.12 -1.08 5.89 -26.65 -0.16 -1.24 16 27 C -0.12 -1.23 5.88 -26.67 -0.16 -1.38 16 28 C -0.15 -2.09 3.60 -26.66 -0.10 -2.18 16 29 C 0.15 1.73 2.61 -68.11 -0.18 1.56 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.96 7.74 -51.93 -0.40 0.56 16 36 H 0.08 1.28 7.97 -51.93 -0.41 0.87 16 37 H 0.07 0.95 6.92 -51.93 -0.36 0.59 16 38 H 0.04 0.75 3.97 -51.93 -0.21 0.55 16 39 H 0.03 0.55 7.40 -51.93 -0.38 0.16 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.12 1.36 6.77 -51.93 -0.35 1.00 16 43 H 0.40 3.56 8.71 -40.82 -0.36 3.21 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.13 1.94 5.81 -52.13 -0.30 1.64 16 51 H 0.09 1.42 4.79 -51.92 -0.25 1.17 16 LS Contribution 393.87 15.07 5.94 5.94 Total: -1.00 -33.97 393.87 -9.46 -43.43 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -8.03 Total: 5.00 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -0.13 Total: 2.89 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -0.21 Total: -66.34 kcal Atomic # 8 Polarization: -53.87 SS G_CDS: -1.74 Total: -55.61 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.76 kcal Atomic # 16 Polarization: 49.54 SS G_CDS: -0.61 Total: 48.93 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.97 -9.46 -43.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252494271.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.706 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds