Wall clock time and date at job start Tue Mar 31 2020 05:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 114.00257 * 2 1 4 4 C 1.52998 * 109.46979 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46890 * 65.00866 * 4 3 2 6 6 C 1.46501 * 119.99532 * 274.99186 * 5 4 3 7 7 C 1.50699 * 109.47243 * 275.00321 * 6 5 4 8 8 H 1.07998 * 120.00477 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99910 * 180.02562 * 7 6 5 10 10 N 1.31521 * 120.00100 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00147 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47052 * 89.99405 * 11 9 7 13 13 H 1.48499 * 109.47207 * 210.00244 * 11 9 7 14 14 H 1.48504 * 109.46885 * 329.99843 * 11 9 7 15 15 S 1.65598 * 120.00254 * 94.99776 * 5 4 3 16 16 O 1.42098 * 106.40228 * 336.45578 * 15 5 4 17 17 O 1.42110 * 106.39943 * 203.53392 * 15 5 4 18 18 N 1.65600 * 107.21766 * 89.99858 * 15 5 4 19 19 C 1.47043 * 121.51662 * 90.00036 * 18 15 5 20 20 C 1.50418 * 109.22962 * 222.42195 * 19 18 15 21 21 O 1.21278 * 118.53307 * 167.90583 * 20 19 18 22 22 N 1.33640 * 122.93787 * 347.88454 * 20 19 18 23 23 C 1.45241 * 123.98935 * 4.52324 * 22 20 19 24 24 H 1.08992 * 107.76714 * 93.55687 * 23 22 20 25 25 C 1.52242 * 111.58036 * 211.68202 * 23 22 20 26 26 C 1.52967 * 110.15515 * 67.46820 * 25 23 22 27 27 C 1.53101 * 109.09608 * 59.41418 * 26 25 23 28 28 C 1.52867 * 109.16442 * 298.84545 * 27 26 25 29 29 C 1.47713 * 121.51606 * 270.02008 * 18 15 5 30 30 H 1.09002 * 110.25026 * 357.86723 * 29 18 15 31 31 H 1.09002 * 109.46927 * 299.99547 * 1 2 3 32 32 H 1.09005 * 109.47092 * 59.99312 * 1 2 3 33 33 H 1.08995 * 109.47197 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46402 * 59.99935 * 3 2 1 35 35 H 1.08999 * 109.46989 * 300.00787 * 3 2 1 36 36 H 1.08993 * 109.47331 * 305.00032 * 4 3 2 37 37 H 1.09002 * 109.46656 * 185.00228 * 4 3 2 38 38 H 1.08994 * 109.47200 * 35.00425 * 6 5 4 39 39 H 1.09000 * 109.47322 * 155.00545 * 6 5 4 40 40 H 0.96997 * 119.99613 * 180.02562 * 10 9 7 41 41 H 1.09005 * 109.51215 * 102.50016 * 19 18 15 42 42 H 1.09000 * 109.51399 * 342.34739 * 19 18 15 43 43 H 0.97001 * 118.00188 * 184.49787 * 22 20 19 44 44 H 1.09004 * 109.35824 * 307.26031 * 25 23 22 45 45 H 1.09006 * 109.35795 * 187.67620 * 25 23 22 46 46 H 1.09002 * 109.54846 * 179.32471 * 26 25 23 47 47 H 1.08999 * 109.54696 * 299.50820 * 26 25 23 48 48 H 1.08998 * 109.52319 * 58.65717 * 27 26 25 49 49 H 1.08996 * 109.52484 * 178.84748 * 27 26 25 50 50 H 1.08997 * 109.32162 * 300.59467 * 28 27 26 51 51 H 1.08998 * 109.39811 * 180.91296 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0003 -0.8949 -1.3783 7 6 5.2993 -1.4246 -0.8278 8 1 6.0329 -0.7424 -0.4243 9 6 5.5511 -2.7801 -0.8391 10 7 4.6575 -3.6109 -1.3300 11 14 7.1610 -3.4368 -0.1560 12 1 7.0017 -3.7301 1.2909 13 1 7.5331 -4.6814 -0.8755 14 1 8.2281 -2.4206 -0.3405 15 16 4.4452 1.5132 -2.5263 16 8 3.8176 2.7743 -2.3400 17 8 4.2756 0.7258 -3.6971 18 7 6.0732 1.7732 -2.3696 19 6 7.0584 0.8666 -2.9775 20 6 8.1760 0.6226 -2.0007 21 8 8.9652 -0.2682 -2.2341 22 7 8.3384 1.3438 -0.8874 23 6 7.4139 2.3727 -0.4444 24 1 6.7077 1.9106 0.2453 25 6 8.1327 3.4869 0.3038 26 6 9.0391 4.2643 -0.6523 27 6 8.1875 4.8601 -1.7765 28 6 7.5115 3.7269 -2.5484 29 6 6.6016 2.9262 -1.6124 30 1 5.7820 3.5425 -1.2430 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5140 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6886 1.8463 0.8900 35 1 1.6885 1.8464 -0.8899 36 1 3.8514 0.5681 0.8409 37 1 3.9785 2.1764 0.0890 38 1 3.1677 -1.3218 -0.8192 39 1 3.9117 -1.1708 -2.4291 40 1 4.8346 -4.5646 -1.3376 41 1 7.4597 1.3199 -3.8839 42 1 6.5781 -0.0801 -3.2249 43 1 9.1212 1.1693 -0.3419 44 1 8.7358 3.0551 1.1025 45 1 7.3968 4.1652 0.7358 46 1 9.5392 5.0664 -0.1094 47 1 9.7841 3.5914 -1.0766 48 1 7.4263 5.5132 -1.3499 49 1 8.8239 5.4330 -2.4510 50 1 8.2741 3.0679 -2.9631 51 1 6.9169 4.1461 -3.3600 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252494273.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:36 Heat of formation + Delta-G solvation = -152.779021 kcal Electronic energy + Delta-G solvation = -36727.417134 eV Core-core repulsion = 32174.647883 eV Total energy + Delta-G solvation = -4552.769251 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.171 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.67790 -38.00247 -37.76362 -36.77206 -35.40161 -35.30767 -35.08112 -33.83609 -32.52015 -30.15446 -29.66808 -29.47384 -26.78850 -26.46501 -25.65345 -23.06212 -22.89339 -22.76907 -21.79471 -20.84346 -18.83814 -18.46341 -17.44253 -17.13222 -17.07158 -16.35821 -16.02229 -15.94849 -15.82135 -15.67100 -15.32157 -14.83814 -14.59648 -14.45048 -14.29491 -14.01366 -13.55405 -13.50564 -13.23373 -13.03518 -12.66883 -12.56713 -12.39902 -12.30336 -12.08678 -12.04535 -11.88919 -11.71801 -11.59591 -11.56186 -11.35874 -11.24277 -11.03925 -10.85822 -10.80035 -10.71192 -10.69555 -10.44800 -10.35217 -10.07840 -9.80669 -9.68581 -9.30748 -8.96570 -8.64860 -8.37002 -8.02979 -6.00268 -4.06712 1.06828 2.96001 3.18439 3.35722 3.44567 3.48158 3.55336 3.94328 4.14306 4.42968 4.44844 4.49832 4.55494 4.71964 4.85412 4.93607 4.99520 5.10671 5.19889 5.28942 5.34135 5.37804 5.39369 5.45436 5.49008 5.52574 5.58676 5.61616 5.62832 5.66701 5.72889 5.79889 5.82467 5.91550 5.93491 5.95485 6.05025 6.08802 6.22332 6.26904 6.43571 6.59227 7.03181 7.47361 7.53127 7.53320 7.55774 7.77781 7.96759 8.25466 8.50793 8.97768 9.60253 11.07191 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.008024 B = 0.005604 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3488.565208 B = 4994.931237 C = 6991.283767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.044 3.956 4 C 0.136 3.864 5 N -0.981 5.981 6 C 0.245 3.755 7 C -0.538 4.538 8 H 0.059 0.941 9 C 0.070 3.930 10 N -0.887 5.887 11 Si 0.882 3.118 12 H -0.285 1.285 13 H -0.287 1.287 14 H -0.263 1.263 15 S 2.781 3.219 16 O -0.995 6.995 17 O -0.969 6.969 18 N -1.007 6.007 19 C 0.119 3.881 20 C 0.528 3.472 21 O -0.545 6.545 22 N -0.706 5.706 23 C 0.132 3.868 24 H 0.073 0.927 25 C -0.125 4.125 26 C -0.121 4.121 27 C -0.116 4.116 28 C -0.128 4.128 29 C 0.145 3.855 30 H 0.116 0.884 31 H 0.034 0.966 32 H 0.035 0.965 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.045 0.955 40 H 0.263 0.737 41 H 0.095 0.905 42 H 0.132 0.868 43 H 0.395 0.605 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.065 0.935 50 H 0.069 0.931 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.136 18.089 3.915 18.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.035 4.035 4 C 0.009 3.991 5 N -0.823 5.823 6 C 0.124 3.876 7 C -0.577 4.577 8 H 0.077 0.923 9 C -0.133 4.133 10 N -0.525 5.525 11 Si 0.710 3.290 12 H -0.211 1.211 13 H -0.213 1.213 14 H -0.187 1.187 15 S 2.791 3.209 16 O -0.979 6.979 17 O -0.953 6.953 18 N -0.845 5.845 19 C -0.009 4.009 20 C 0.313 3.687 21 O -0.422 6.422 22 N -0.359 5.359 23 C 0.025 3.975 24 H 0.091 0.909 25 C -0.164 4.164 26 C -0.158 4.158 27 C -0.154 4.154 28 C -0.167 4.167 29 C 0.038 3.962 30 H 0.134 0.866 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.113 0.887 42 H 0.150 0.850 43 H 0.231 0.769 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.084 0.916 50 H 0.088 0.912 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.820 17.572 2.865 17.897 hybrid contribution 1.113 -0.549 1.063 1.634 sum 2.933 17.023 3.928 17.715 Atomic orbital electron populations 1.22705 0.82299 1.02506 0.99098 1.88110 1.18488 1.26933 1.95145 1.23084 0.95290 0.85268 0.99856 1.21070 0.91473 0.97464 0.89111 1.57701 1.77972 1.19637 1.26956 1.19321 0.98275 0.71128 0.98903 1.21480 1.02594 0.92118 1.41532 0.92318 1.24865 0.96483 0.96914 0.95038 1.69942 1.34368 1.03168 1.45020 0.86716 0.84662 0.79161 0.78501 1.21118 1.21294 1.18693 1.02003 0.72242 0.72561 0.74116 1.93526 1.73933 1.43216 1.87266 1.93598 1.84649 1.70645 1.46440 1.58837 1.24943 1.34270 1.66424 1.21451 0.88689 0.96261 0.94497 1.20224 0.86069 0.80453 0.81927 1.90776 1.45537 1.30672 1.75171 1.45205 1.27452 1.37674 1.25577 1.20856 0.91700 0.88949 0.96037 0.90896 1.21699 0.99675 0.96960 0.98072 1.21555 0.98083 0.99493 0.96695 1.21503 0.99110 0.97335 0.97457 1.21864 0.99098 0.97358 0.98412 1.21384 0.96987 0.86693 0.91136 0.86603 0.94780 0.94606 0.89807 0.93144 0.93309 0.89087 0.90572 0.92394 0.93705 0.92771 0.88672 0.85050 0.76944 0.90914 0.89943 0.91695 0.91666 0.91454 0.91583 0.91245 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.60 9.02 -35.23 -0.32 -6.91 16 3 C 0.04 0.68 6.28 37.16 0.23 0.91 16 4 C 0.14 2.19 5.79 -4.04 -0.02 2.17 16 5 N -0.98 -19.34 2.81 -115.67 -0.33 -19.66 16 6 C 0.25 6.04 5.27 -5.19 -0.03 6.02 16 7 C -0.54 -14.01 9.38 -34.44 -0.32 -14.34 16 8 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.07 1.96 5.46 -17.82 -0.10 1.86 16 10 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 11 Si 0.88 22.08 29.54 -169.99 -5.02 17.06 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.26 -6.71 7.11 56.52 0.40 -6.31 16 15 S 2.78 52.28 6.11 -107.50 -0.66 51.63 16 16 O -1.00 -18.16 15.85 -57.17 -0.91 -19.06 16 17 O -0.97 -21.87 15.67 -57.17 -0.90 -22.76 16 18 N -1.01 -15.85 3.11 -107.57 -0.33 -16.19 16 19 C 0.12 2.04 5.55 -5.03 -0.03 2.01 16 20 C 0.53 9.37 7.16 -11.63 -0.08 9.29 16 21 O -0.55 -11.91 17.81 5.56 0.10 -11.81 16 22 N -0.71 -9.89 4.83 -55.53 -0.27 -10.16 16 23 C 0.13 1.49 2.95 -69.17 -0.20 1.29 16 24 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 25 C -0.13 -0.98 5.51 -27.13 -0.15 -1.13 16 26 C -0.12 -0.90 5.87 -26.70 -0.16 -1.06 16 27 C -0.12 -0.90 5.93 -26.75 -0.16 -1.06 16 28 C -0.13 -1.32 4.98 -26.73 -0.13 -1.45 16 29 C 0.14 1.74 2.83 -67.37 -0.19 1.55 16 30 H 0.12 1.28 7.13 -51.93 -0.37 0.91 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 1.52 8.11 -51.93 -0.42 1.10 16 37 H 0.08 0.98 7.61 -51.93 -0.40 0.58 16 38 H 0.06 1.54 6.60 -51.93 -0.34 1.20 16 39 H 0.05 1.24 6.91 -51.93 -0.36 0.88 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.10 1.36 7.57 -51.93 -0.39 0.97 16 42 H 0.13 2.65 7.51 -51.93 -0.39 2.26 16 43 H 0.39 5.12 8.64 -40.82 -0.35 4.76 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.56 7.98 -51.93 -0.41 0.15 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.07 0.77 6.22 -51.93 -0.32 0.45 16 51 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 411.44 15.07 6.20 6.20 Total: -1.00 -35.23 411.44 -10.30 -45.53 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -8.38 Total: 3.83 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -0.23 Total: 7.60 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: -0.19 Total: -71.28 kcal Atomic # 8 Polarization: -58.53 SS G_CDS: -2.02 Total: -60.55 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 52.28 SS G_CDS: -0.66 Total: 51.63 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.23 -10.30 -45.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252494273.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.254 kcal (2) G-P(sol) polarization free energy of solvation -35.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds