Wall clock time and date at job start Tue Mar 31 2020 06:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42891 * 113.99889 * 2 1 4 4 C 1.52998 * 109.47478 * 179.97438 * 3 2 1 5 5 N 1.46509 * 109.46774 * 64.99641 * 4 3 2 6 6 C 1.46499 * 119.99635 * 85.00394 * 5 4 3 7 7 C 1.50704 * 109.46932 * 232.63452 * 6 5 4 8 8 H 1.07995 * 120.00334 * 274.37354 * 7 6 5 9 9 C 1.37884 * 119.99544 * 94.36764 * 7 6 5 10 10 N 1.31517 * 119.99925 * 200.33029 * 9 7 6 11 11 Si 1.86796 * 120.00011 * 20.33163 * 9 7 6 12 12 H 1.48506 * 109.47086 * 263.56659 * 11 9 7 13 13 H 1.48499 * 109.47154 * 143.57400 * 11 9 7 14 14 H 1.48492 * 109.47431 * 23.56936 * 11 9 7 15 15 S 1.65600 * 119.99928 * 265.00082 * 5 4 3 16 16 O 1.42097 * 106.40112 * 12.67418 * 15 5 4 17 17 O 1.42106 * 106.39697 * 145.59080 * 15 5 4 18 18 N 1.65591 * 107.21803 * 259.12999 * 15 5 4 19 19 C 1.46946 * 120.66665 * 94.93306 * 18 15 5 20 20 C 1.53163 * 108.70964 * 233.77657 * 19 18 15 21 21 C 1.53106 * 109.37876 * 305.23122 * 20 19 18 22 22 O 1.42902 * 109.49807 * 301.11481 * 21 20 19 23 23 C 1.53030 * 109.19662 * 181.23029 * 21 20 19 24 24 C 1.52973 * 109.57163 * 180.22345 * 23 21 20 25 25 C 1.53020 * 109.39815 * 60.09845 * 24 23 21 26 26 C 1.52968 * 109.38827 * 299.83301 * 25 24 23 27 27 C 1.53035 * 109.56385 * 60.10003 * 26 25 24 28 28 H 1.08993 * 109.54482 * 60.31857 * 27 26 25 29 29 C 1.46894 * 120.67126 * 274.65224 * 18 15 5 30 30 H 1.08999 * 109.47549 * 300.00120 * 1 2 3 31 31 H 1.09000 * 109.47013 * 60.00737 * 1 2 3 32 32 H 1.09004 * 109.46763 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47409 * 59.99211 * 3 2 1 34 34 H 1.09006 * 109.47051 * 299.99872 * 3 2 1 35 35 H 1.09000 * 109.47317 * 305.00227 * 4 3 2 36 36 H 1.08995 * 109.47774 * 184.99481 * 4 3 2 37 37 H 1.08994 * 109.46986 * 112.64282 * 6 5 4 38 38 H 1.08998 * 109.47771 * 352.63498 * 6 5 4 39 39 H 0.97000 * 119.99750 * 185.01189 * 10 9 7 40 40 H 1.09006 * 109.59371 * 353.54076 * 19 18 15 41 41 H 1.09000 * 109.60003 * 114.00601 * 19 18 15 42 42 H 1.09001 * 109.48964 * 65.20195 * 20 19 18 43 43 H 1.08998 * 109.48750 * 185.26418 * 20 19 18 44 44 H 0.96705 * 113.99951 * 299.99679 * 22 21 20 45 45 H 1.09001 * 109.45707 * 300.25689 * 23 21 20 46 46 H 1.09001 * 109.45492 * 60.21319 * 23 21 20 47 47 H 1.09004 * 109.48080 * 180.02562 * 24 23 21 48 48 H 1.09000 * 109.48482 * 300.11877 * 24 23 21 49 49 H 1.08996 * 109.48387 * 59.80634 * 25 24 23 50 50 H 1.08995 * 109.48307 * 179.85739 * 25 24 23 51 51 H 1.08996 * 109.45521 * 180.12372 * 26 25 24 52 52 H 1.09000 * 109.45403 * 300.08878 * 26 25 24 53 53 H 1.08999 * 109.57542 * 246.11844 * 29 18 15 54 54 H 1.08999 * 109.56755 * 6.49428 * 29 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.1827 1.3881 -2.4444 7 6 3.4064 0.8055 -3.5973 8 1 3.8418 0.0230 -4.2010 9 6 2.1402 1.2716 -3.8814 10 7 1.3127 0.5363 -4.5915 11 14 1.6001 2.9475 -3.2576 12 1 0.8386 2.7833 -1.9933 13 1 0.7363 3.5994 -4.2745 14 1 2.7959 3.7921 -3.0091 15 16 4.2424 -1.0693 -1.3164 16 8 3.6824 -1.6148 -0.1298 17 8 3.8591 -1.4862 -2.6197 18 7 5.8783 -1.3042 -1.2125 19 6 6.5147 -1.5828 0.0824 20 6 7.6458 -0.5735 0.3012 21 6 8.6054 -0.6196 -0.8910 22 8 9.1348 -1.9400 -1.0263 23 6 9.7501 0.3680 -0.6540 24 6 10.7116 0.3329 -1.8433 25 6 9.9591 0.7241 -3.1169 26 6 8.8177 -0.2657 -3.3566 27 6 7.8545 -0.2348 -2.1678 28 1 7.4410 0.7678 -2.0595 29 6 6.7217 -1.2445 -2.4137 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.8508 0.5686 0.8427 36 1 3.9784 2.1765 0.0901 37 1 5.2436 1.4075 -2.6938 38 1 3.8366 2.4031 -2.2494 39 1 0.4494 0.8930 -4.8530 40 1 5.7783 -1.4852 0.8802 41 1 6.9222 -2.5937 0.0796 42 1 7.2266 0.4286 0.3919 43 1 8.1868 -0.8256 1.2132 44 1 9.6265 -2.2479 -0.2526 45 1 9.3449 1.3739 -0.5443 46 1 10.2860 0.0915 0.2540 47 1 11.5265 1.0365 -1.6728 48 1 11.1159 -0.6732 -1.9544 49 1 9.5515 1.7287 -3.0044 50 1 10.6435 0.7020 -3.9649 51 1 8.2822 0.0107 -4.2649 52 1 9.2256 -1.2704 -3.4671 53 1 7.1435 -2.2296 -2.6131 54 1 6.1221 -0.9227 -3.2651 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252532976.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:01 Heat of formation + Delta-G solvation = -194.156178 kcal Electronic energy + Delta-G solvation = -37350.028400 eV Core-core repulsion = 32833.579333 eV Total energy + Delta-G solvation = -4516.449067 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.191 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.15182 -39.06899 -38.00262 -37.04969 -36.93407 -36.40735 -36.05160 -34.42587 -32.87839 -31.54862 -31.29276 -29.88783 -28.77659 -27.07335 -25.52986 -24.27591 -24.18630 -23.16378 -23.00748 -21.38082 -20.67161 -19.78244 -19.32595 -18.37187 -17.64282 -17.55630 -17.13784 -16.94717 -16.78577 -16.43721 -16.18905 -16.06777 -15.78886 -15.53860 -15.28377 -14.95644 -14.76657 -14.60610 -14.47885 -14.14848 -13.95715 -13.83159 -13.74173 -13.58888 -13.31018 -13.08174 -13.03568 -12.74950 -12.70490 -12.68762 -12.51621 -12.47057 -12.42497 -12.24333 -12.16051 -12.00794 -11.77737 -11.75219 -11.71210 -11.47877 -11.33344 -11.15381 -10.77481 -10.60530 -10.53121 -10.31233 -9.75274 -9.54538 -8.24539 -6.22116 -0.08189 1.27857 1.36394 1.44454 2.24541 2.37448 2.83106 2.98184 3.17440 3.40163 3.65907 3.70188 3.79235 3.88923 4.06547 4.09704 4.19046 4.22660 4.26082 4.30502 4.39176 4.45017 4.46382 4.47747 4.49706 4.54415 4.56263 4.62914 4.72520 4.72849 4.78377 4.82121 4.84074 4.89439 4.91985 5.01294 5.04038 5.12318 5.13427 5.24898 5.28806 5.36225 5.36980 5.39820 5.40894 5.55266 5.59989 5.68548 5.76126 6.16101 6.32233 6.42485 6.95927 7.09447 7.39472 8.93473 Molecular weight = 376.19amu Principal moments of inertia in cm(-1) A = 0.012498 B = 0.004057 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.770202 B = 6900.833294 C = 7817.082643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.404 6.404 3 C 0.014 3.986 4 C 0.119 3.881 5 N -0.992 5.992 6 C 0.217 3.783 7 C -0.522 4.522 8 H 0.042 0.958 9 C 0.027 3.973 10 N -0.923 5.923 11 Si 0.914 3.086 12 H -0.251 1.251 13 H -0.296 1.296 14 H -0.226 1.226 15 S 2.781 3.219 16 O -1.008 7.008 17 O -1.000 7.000 18 N -1.006 6.006 19 C 0.119 3.881 20 C -0.153 4.153 21 C 0.149 3.851 22 O -0.563 6.563 23 C -0.137 4.137 24 C -0.111 4.111 25 C -0.116 4.116 26 C -0.112 4.112 27 C -0.080 4.080 28 H 0.083 0.917 29 C 0.135 3.865 30 H 0.069 0.931 31 H 0.021 0.979 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.124 0.876 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.260 0.740 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.386 0.614 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.062 0.938 50 H 0.066 0.934 51 H 0.051 0.949 52 H 0.064 0.936 53 H 0.065 0.935 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.039 4.841 14.562 23.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.323 6.323 3 C -0.064 4.064 4 C -0.007 4.007 5 N -0.834 5.834 6 C 0.096 3.904 7 C -0.563 4.563 8 H 0.060 0.940 9 C -0.173 4.173 10 N -0.562 5.562 11 Si 0.738 3.262 12 H -0.177 1.177 13 H -0.223 1.223 14 H -0.149 1.149 15 S 2.792 3.208 16 O -0.992 6.992 17 O -0.983 6.983 18 N -0.847 5.847 19 C -0.005 4.005 20 C -0.192 4.192 21 C 0.108 3.892 22 O -0.371 6.371 23 C -0.174 4.174 24 C -0.148 4.148 25 C -0.153 4.153 26 C -0.150 4.150 27 C -0.100 4.100 28 H 0.101 0.899 29 C 0.010 3.990 30 H 0.087 0.913 31 H 0.040 0.960 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.060 0.940 35 H 0.109 0.891 36 H 0.142 0.858 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.124 0.876 44 H 0.235 0.765 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.090 0.910 48 H 0.083 0.917 49 H 0.080 0.920 50 H 0.085 0.915 51 H 0.070 0.930 52 H 0.083 0.917 53 H 0.083 0.917 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.026 3.984 13.893 22.333 hybrid contribution -1.009 0.574 -0.185 1.176 sum 16.017 4.558 13.709 21.569 Atomic orbital electron populations 1.22804 0.81055 1.02907 1.00019 1.87994 1.20263 1.28673 1.95385 1.23643 0.96336 0.85167 1.01237 1.21535 0.91501 1.01511 0.86178 1.58606 1.81034 1.26511 1.17234 1.19386 0.96813 0.92533 0.81652 1.21741 1.00363 1.20435 1.13733 0.93979 1.25999 0.95378 1.00615 0.95325 1.70344 1.08337 1.36713 1.40820 0.86397 0.79880 0.81372 0.78570 1.17733 1.22277 1.14909 1.02082 0.72892 0.73915 0.71905 1.93462 1.77077 1.78330 1.50339 1.93658 1.80899 1.82205 1.41562 1.58253 1.25953 1.86378 1.14071 1.21459 0.96005 1.00043 0.83030 1.22610 0.96826 1.00272 0.99455 1.20953 0.91875 0.83209 0.93119 1.86553 1.74232 1.31127 1.45190 1.22173 0.96283 0.99733 0.99239 1.21425 0.97610 1.01924 0.93853 1.21508 0.96748 0.98473 0.98597 1.21468 0.96388 1.00582 0.96544 1.21543 0.94365 0.98513 0.95582 0.89907 1.21383 0.92013 1.00085 0.85558 0.91266 0.96044 0.89795 0.89826 0.93954 0.89089 0.85767 0.93243 0.91747 0.93096 0.90055 0.90853 0.90315 0.87589 0.76452 0.90903 0.89638 0.91004 0.91738 0.91970 0.91503 0.92991 0.91714 0.91669 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 11.01 113.37 1.25 2.29 16 2 O -0.40 -17.63 9.30 -136.29 -1.27 -18.90 16 3 C 0.01 0.51 6.28 71.98 0.45 0.96 16 4 C 0.12 3.86 5.73 86.38 0.49 4.35 16 5 N -0.99 -40.63 2.98 -519.84 -1.55 -42.18 16 6 C 0.22 9.49 6.02 85.63 0.52 10.01 16 7 C -0.52 -29.87 7.64 25.60 0.20 -29.67 16 8 H 0.04 2.81 6.94 -2.91 -0.02 2.79 16 9 C 0.03 1.60 5.46 84.66 0.46 2.06 16 10 N -0.92 -59.68 13.95 21.45 0.30 -59.38 16 11 Si 0.91 41.33 25.53 68.60 1.75 43.08 16 12 H -0.25 -10.63 5.48 99.48 0.55 -10.08 16 13 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 14 H -0.23 -8.79 6.40 99.48 0.64 -8.15 16 15 S 2.78 126.82 5.90 -56.49 -0.33 126.49 16 16 O -1.01 -47.79 14.14 -121.96 -1.72 -49.52 16 17 O -1.00 -58.14 13.51 -128.00 -1.73 -59.87 16 18 N -1.01 -34.72 3.34 -512.18 -1.71 -36.43 16 19 C 0.12 3.09 6.17 86.35 0.53 3.62 16 20 C -0.15 -2.67 5.06 30.68 0.16 -2.52 16 21 C 0.15 2.71 0.55 -10.73 -0.01 2.70 16 22 O -0.56 -10.19 10.46 -148.98 -1.56 -11.75 16 23 C -0.14 -1.80 4.89 30.60 0.15 -1.65 16 24 C -0.11 -1.56 5.78 30.59 0.18 -1.38 16 25 C -0.12 -2.04 5.93 30.59 0.18 -1.86 16 26 C -0.11 -2.59 5.03 30.60 0.15 -2.44 16 27 C -0.08 -2.00 2.03 -10.52 -0.02 -2.02 16 28 H 0.08 2.11 8.05 -2.39 -0.02 2.09 16 29 C 0.14 4.54 5.41 86.55 0.47 5.01 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 2.91 8.14 -2.38 -0.02 2.89 16 33 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.04 1.73 3.82 -2.38 -0.01 1.72 16 35 H 0.09 2.73 7.31 -2.39 -0.02 2.71 16 36 H 0.12 2.91 8.09 -2.39 -0.02 2.89 16 37 H 0.05 1.93 8.05 -2.39 -0.02 1.91 16 38 H 0.06 2.56 4.75 -2.39 -0.01 2.55 16 39 H 0.26 15.68 8.32 -92.71 -0.77 14.91 16 40 H 0.08 2.17 7.00 -2.38 -0.02 2.15 16 41 H 0.07 1.80 7.82 -2.39 -0.02 1.78 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.39 3.76 9.04 -74.05 -0.67 3.09 16 45 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 48 H 0.06 0.97 7.70 -2.39 -0.02 0.95 16 49 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 52 H 0.06 1.57 7.71 -2.39 -0.02 1.56 16 53 H 0.06 2.20 7.83 -2.39 -0.02 2.18 16 54 H 0.06 2.33 7.26 -2.39 -0.02 2.31 16 Total: -1.00 -85.52 408.48 -2.67 -88.19 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: -0.01 Total: 30.80 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 5.16 Total: -10.52 kcal Atomic # 7 Polarization: -135.03 SS G_CDS: -2.96 Total: -137.99 kcal Atomic # 8 Polarization: -133.75 SS G_CDS: -6.28 Total: -140.03 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 1.75 Total: 43.08 kcal Atomic # 16 Polarization: 126.82 SS G_CDS: -0.33 Total: 126.49 kcal Total: -85.52 -2.67 -88.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252532976.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.967 kcal (2) G-P(sol) polarization free energy of solvation -85.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds