Wall clock time and date at job start Tue Mar 31 2020 05:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 107.88678 * 2 1 4 4 C 1.54638 * 108.03732 * 243.42785 * 2 1 3 5 5 N 1.47225 * 117.46849 * 191.58643 * 4 2 1 6 6 C 1.46896 * 110.99987 * 193.33770 * 5 4 2 7 7 C 1.50703 * 109.46940 * 63.97367 * 6 5 4 8 8 N 1.29828 * 118.35121 * 5.42340 * 7 6 5 9 9 C 1.35635 * 121.62432 * 179.76669 * 8 7 6 10 10 C 1.39631 * 121.61901 * 180.23498 * 9 8 7 11 11 C 1.37713 * 119.69481 * 180.24206 * 10 9 8 12 12 C 1.38882 * 120.82394 * 359.97438 * 11 10 9 13 13 C 1.37788 * 120.56627 * 0.02562 * 12 11 10 14 14 C 1.39363 * 119.52455 * 359.97438 * 13 12 11 15 15 C 1.46964 * 121.90952 * 179.97438 * 14 13 12 16 16 O 1.21719 * 121.28552 * 359.97438 * 15 14 13 17 17 N 1.35342 * 117.42295 * 180.02562 * 15 14 13 18 18 C 1.37115 * 119.71339 * 180.02562 * 17 15 14 19 19 H 1.07996 * 119.99727 * 225.15473 * 18 17 15 20 20 C 1.39069 * 120.00090 * 45.15171 * 18 17 15 21 21 N 1.31268 * 119.99962 * 18.97495 * 20 18 17 22 22 Si 1.86799 * 120.00146 * 198.97196 * 20 18 17 23 23 H 1.48493 * 109.46941 * 90.00244 * 22 20 18 24 24 H 1.48498 * 109.47103 * 210.00178 * 22 20 18 25 25 H 1.48496 * 109.46763 * 330.00290 * 22 20 18 26 26 C 1.43450 * 111.40378 * 317.59032 * 5 4 2 27 27 C 1.52287 * 104.91073 * 100.56826 * 26 5 4 28 28 S 1.74917 * 114.45684 * 267.14648 * 27 26 5 29 29 O 1.42103 * 109.46544 * 177.16732 * 28 27 26 30 30 C 1.50600 * 108.03771 * 116.54243 * 2 1 3 31 31 H 1.09001 * 109.46980 * 176.56811 * 1 2 3 32 32 H 1.09006 * 109.46894 * 56.57323 * 1 2 3 33 33 H 1.08997 * 109.47322 * 296.57118 * 1 2 3 34 34 H 1.08992 * 107.84734 * 313.60875 * 4 2 1 35 35 H 1.09003 * 107.84462 * 69.61202 * 4 2 1 36 36 H 1.08998 * 109.47267 * 183.96689 * 6 5 4 37 37 H 1.08994 * 109.47168 * 303.97219 * 6 5 4 38 38 H 1.08009 * 120.15836 * 0.26133 * 10 9 8 39 39 H 1.07997 * 119.59360 * 179.97438 * 11 10 9 40 40 H 1.07995 * 119.71403 * 180.02562 * 12 11 10 41 41 H 1.08011 * 120.23729 * 180.02562 * 13 12 11 42 42 H 0.96995 * 120.00070 * 179.97438 * 21 20 18 43 43 H 1.08999 * 110.33873 * 219.40589 * 26 5 4 44 44 H 1.08988 * 110.34780 * 341.55647 * 26 5 4 45 45 H 1.09002 * 108.48820 * 28.43835 * 27 26 5 46 46 H 1.09003 * 108.48266 * 145.86317 * 27 26 5 47 47 H 1.08999 * 109.56014 * 330.77733 * 30 2 1 48 48 H 1.08999 * 109.56261 * 91.10307 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8648 1.0373 0.0000 4 6 2.0089 -0.6577 -1.3151 5 7 3.4359 -1.0040 -1.4208 6 6 3.7999 -1.3184 -2.8089 7 6 3.6192 -0.0918 -3.6656 8 7 3.3002 1.0245 -3.0846 9 6 3.1258 2.1693 -3.7908 10 6 2.7874 3.3710 -3.1653 11 6 2.6151 4.5089 -3.9216 12 6 2.7741 4.4774 -5.3009 13 6 3.1078 3.3039 -5.9412 14 6 3.2868 2.1410 -5.1944 15 6 3.6425 0.8611 -5.8231 16 8 3.7944 0.7690 -7.0272 17 7 3.7936 -0.2114 -5.0114 18 6 4.1257 -1.4285 -5.5482 19 1 3.6068 -2.3197 -5.2277 20 6 5.1308 -1.5154 -6.5055 21 7 6.0034 -0.5428 -6.6311 22 14 5.2392 -3.0162 -7.6125 23 1 4.4338 -2.7860 -8.8386 24 1 6.6562 -3.2528 -7.9882 25 1 4.7136 -4.2027 -6.8905 26 6 4.2681 0.0393 -0.8948 27 6 4.6623 -0.4380 0.4967 28 16 3.6091 0.1175 1.7781 29 8 4.0331 -0.4399 3.0145 30 6 1.9964 -0.6399 1.2811 31 1 -0.3633 -1.0258 -0.0615 32 1 -0.3633 0.5661 -0.8577 33 1 -0.3634 0.4597 0.9191 34 1 1.4319 -1.5708 -1.4613 35 1 1.7686 0.0200 -2.1343 36 1 4.8410 -1.6385 -2.8479 37 1 3.1595 -2.1184 -3.1801 38 1 2.6618 3.4080 -2.0932 39 1 2.3530 5.4373 -3.4361 40 1 2.6350 5.3806 -5.8765 41 1 3.2305 3.2856 -7.0142 42 1 6.7046 -0.6036 -7.2985 43 1 5.1542 0.1670 -1.5166 44 1 3.7110 0.9740 -0.8338 45 1 4.6657 -1.5280 0.5001 46 1 5.6744 -0.0921 0.7068 47 1 1.2571 -0.4704 2.0639 48 1 2.1282 -1.7109 1.1272 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253428720.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:03 Heat of formation + Delta-G solvation = 5.049261 kcal Electronic energy + Delta-G solvation = -33750.281422 eV Core-core repulsion = 29511.665038 eV Total energy + Delta-G solvation = -4238.616384 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.77583 -38.69676 -37.68580 -36.24746 -35.50454 -34.61793 -33.87525 -32.02860 -31.36977 -30.47986 -28.99762 -27.25441 -26.97788 -25.90701 -24.89390 -23.12402 -22.80729 -21.43241 -20.88564 -19.35983 -18.87302 -17.99176 -17.52254 -17.00735 -16.14205 -15.82859 -15.70500 -15.34975 -15.16493 -14.87427 -14.53572 -14.33989 -14.08942 -13.88235 -13.77223 -13.29190 -13.24264 -13.17724 -13.03995 -12.80017 -12.45907 -12.33851 -12.27235 -11.97500 -11.82068 -11.78702 -11.44037 -11.35902 -11.27950 -11.12454 -10.95117 -10.86250 -10.75786 -10.63017 -10.56245 -10.44973 -9.64201 -9.59633 -9.24351 -9.00761 -8.53637 -8.47464 -8.12014 -7.95926 -7.15606 -6.79337 -4.66289 1.38555 1.54816 1.78121 2.67653 2.98825 3.05132 3.07594 3.10695 3.66029 3.82393 3.91024 4.10306 4.23777 4.59176 4.70167 4.79206 4.95557 5.01091 5.13226 5.24309 5.26964 5.34043 5.44099 5.45327 5.54991 5.56334 5.66543 5.70519 5.75637 5.81273 5.83041 5.94547 5.96526 6.03481 6.12187 6.13877 6.15966 6.29797 6.34626 6.41578 6.55112 6.58872 6.70547 6.92585 7.00237 7.02486 7.25980 7.38834 7.48322 7.54102 7.97890 8.34607 8.60152 8.99236 9.37464 10.23514 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.009054 B = 0.003831 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.913048 B = 7307.666347 C = 9241.852873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.059 4.059 3 H 0.077 0.923 4 C 0.047 3.953 5 N -0.520 5.520 6 C 0.121 3.879 7 C 0.335 3.665 8 N -0.574 5.574 9 C 0.173 3.827 10 C -0.134 4.134 11 C -0.087 4.087 12 C -0.176 4.176 13 C -0.038 4.038 14 C -0.210 4.210 15 C 0.522 3.478 16 O -0.503 6.503 17 N -0.347 5.347 18 C -0.388 4.388 19 H 0.108 0.892 20 C 0.083 3.917 21 N -0.806 5.806 22 Si 0.928 3.072 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.264 1.264 26 C 0.105 3.895 27 C -0.477 4.477 28 S 1.243 4.757 29 O -0.875 6.875 30 C -0.409 4.409 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.281 0.719 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.105 0.895 47 H 0.101 0.899 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.032 5.355 9.914 13.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.079 4.079 3 H 0.095 0.905 4 C -0.080 4.080 5 N -0.241 5.241 6 C -0.009 4.009 7 C 0.071 3.929 8 N -0.304 5.304 9 C 0.058 3.942 10 C -0.154 4.154 11 C -0.106 4.106 12 C -0.195 4.195 13 C -0.057 4.057 14 C -0.218 4.218 15 C 0.317 3.683 16 O -0.377 6.377 17 N -0.050 5.050 18 C -0.514 4.514 19 H 0.126 0.874 20 C -0.134 4.134 21 N -0.433 5.433 22 Si 0.753 3.247 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.188 1.188 26 C -0.026 4.026 27 C -0.616 4.616 28 S 1.444 4.556 29 O -0.870 6.870 30 C -0.546 4.546 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.127 0.873 37 H 0.116 0.884 38 H 0.144 0.856 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.493 5.608 10.850 13.832 hybrid contribution 0.460 -2.253 -2.307 3.257 sum -6.033 3.355 8.543 10.984 Atomic orbital electron populations 1.21902 0.94643 1.01841 1.01770 1.20421 0.95982 0.99896 0.91564 0.90452 1.22561 0.88303 1.00052 0.97116 1.61811 1.04042 1.41044 1.17203 1.21287 1.03703 0.91915 0.84011 1.24089 0.90637 0.95158 0.83054 1.68418 1.29931 0.97025 1.35025 1.18725 0.94164 0.92385 0.88955 1.20574 1.04513 0.90754 0.99563 1.20995 0.98230 0.97580 0.93827 1.20850 1.06393 0.97565 0.94711 1.20896 0.93978 0.91151 0.99672 1.20812 1.11005 0.95289 0.94686 1.18356 0.79321 0.83774 0.86879 1.90672 1.49132 1.84127 1.13779 1.42268 1.47602 1.10731 1.04415 1.19570 1.20807 0.84563 1.26464 0.87428 1.25432 0.92878 0.98501 0.96606 1.69781 1.11190 1.32511 1.29853 0.85930 0.77964 0.80256 0.80584 1.19472 1.20444 1.18801 1.20879 0.97634 0.93830 0.90219 1.27306 1.12327 1.10475 1.11472 1.69693 0.87419 1.17010 0.81526 1.93057 1.79189 1.81054 1.33749 1.27396 1.15472 1.08784 1.02945 0.92876 0.92346 0.92453 0.92561 0.91142 0.87306 0.88449 0.85555 0.86420 0.86636 0.85988 0.90869 0.90841 0.89906 0.87990 0.87680 0.88029 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.85 37.16 0.33 -0.92 16 2 C -0.06 -0.57 2.03 -90.96 -0.18 -0.76 16 3 H 0.08 0.64 6.79 -51.93 -0.35 0.29 16 4 C 0.05 0.59 4.24 -2.78 -0.01 0.58 16 5 N -0.52 -7.05 4.18 -238.03 -0.99 -8.04 16 6 C 0.12 1.94 4.37 -4.98 -0.02 1.92 16 7 C 0.33 6.45 6.53 -154.87 -1.01 5.44 16 8 N -0.57 -10.12 5.07 -8.10 -0.04 -10.16 16 9 C 0.17 3.23 6.63 -84.50 -0.56 2.67 16 10 C -0.13 -2.01 10.03 -39.25 -0.39 -2.40 16 11 C -0.09 -1.19 10.00 -39.54 -0.40 -1.58 16 12 C -0.18 -2.68 10.02 -39.51 -0.40 -3.07 16 13 C -0.04 -0.71 9.68 -39.33 -0.38 -1.09 16 14 C -0.21 -4.52 5.89 -104.78 -0.62 -5.13 16 15 C 0.52 13.11 6.93 -12.47 -0.09 13.03 16 16 O -0.50 -14.16 14.66 5.17 0.08 -14.08 16 17 N -0.35 -8.10 2.65 -59.56 -0.16 -8.25 16 18 C -0.39 -9.20 8.13 -14.88 -0.12 -9.32 16 19 H 0.11 2.33 7.06 -52.49 -0.37 1.96 16 20 C 0.08 2.04 4.39 -17.48 -0.08 1.96 16 21 N -0.81 -21.39 11.90 55.50 0.66 -20.73 16 22 Si 0.93 19.10 29.59 -169.99 -5.03 14.07 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 26 C 0.10 1.34 3.84 -6.02 -0.02 1.31 16 27 C -0.48 -5.60 5.56 36.79 0.20 -5.40 16 28 S 1.24 13.18 13.22 -107.50 -1.42 11.76 16 29 O -0.88 -14.83 18.12 -35.23 -0.64 -15.47 16 30 C -0.41 -4.09 5.84 35.96 0.21 -3.88 16 31 H 0.05 0.48 8.09 -51.93 -0.42 0.06 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.42 7.85 -51.93 -0.41 0.01 16 34 H 0.06 0.71 7.96 -51.93 -0.41 0.29 16 35 H 0.07 1.01 5.46 -51.93 -0.28 0.73 16 36 H 0.11 1.81 8.09 -51.93 -0.42 1.39 16 37 H 0.10 1.51 7.33 -51.93 -0.38 1.13 16 38 H 0.13 1.53 8.06 -52.48 -0.42 1.10 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.12 2.35 7.83 -52.48 -0.41 1.94 16 42 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.07 1.08 7.33 -51.93 -0.38 0.70 16 44 H 0.08 0.97 5.44 -51.94 -0.28 0.69 16 45 H 0.10 1.38 7.81 -48.91 -0.38 0.99 16 46 H 0.10 1.17 8.14 -48.91 -0.40 0.77 16 47 H 0.10 0.90 7.55 -51.93 -0.39 0.51 16 48 H 0.09 1.04 8.06 -51.93 -0.42 0.62 16 LS Contribution 385.05 15.07 5.80 5.80 Total: -1.00 -33.45 385.05 -11.82 -45.27 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.54 Total: 6.48 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -3.54 Total: -6.65 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.53 Total: -47.19 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.56 Total: -29.55 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Atomic # 16 Polarization: 13.18 SS G_CDS: -1.42 Total: 11.76 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.45 -11.82 -45.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253428720.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.321 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds