Wall clock time and date at job start Tue Mar 31 2020 05:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 107.88678 * 2 1 4 4 C 1.54638 * 108.03732 * 243.42785 * 2 1 3 5 5 N 1.47225 * 117.46849 * 191.58643 * 4 2 1 6 6 C 1.46896 * 110.99987 * 193.33770 * 5 4 2 7 7 C 1.50703 * 109.46940 * 63.97367 * 6 5 4 8 8 N 1.29828 * 118.35121 * 5.42340 * 7 6 5 9 9 C 1.35635 * 121.62432 * 179.76669 * 8 7 6 10 10 C 1.39631 * 121.61901 * 180.23498 * 9 8 7 11 11 C 1.37713 * 119.69481 * 180.24206 * 10 9 8 12 12 C 1.38882 * 120.82394 * 359.97438 * 11 10 9 13 13 C 1.37788 * 120.56627 * 0.02562 * 12 11 10 14 14 C 1.39363 * 119.52455 * 359.97438 * 13 12 11 15 15 C 1.46964 * 121.90952 * 179.97438 * 14 13 12 16 16 O 1.21719 * 121.28552 * 359.97438 * 15 14 13 17 17 N 1.35342 * 117.42295 * 180.02562 * 15 14 13 18 18 C 1.37115 * 119.71339 * 180.02562 * 17 15 14 19 19 H 1.07996 * 119.99727 * 225.15473 * 18 17 15 20 20 C 1.39069 * 120.00090 * 45.15171 * 18 17 15 21 21 N 1.31268 * 119.99962 * 18.97495 * 20 18 17 22 22 Si 1.86799 * 120.00146 * 198.97196 * 20 18 17 23 23 H 1.48493 * 109.46941 * 90.00244 * 22 20 18 24 24 H 1.48498 * 109.47103 * 210.00178 * 22 20 18 25 25 H 1.48496 * 109.46763 * 330.00290 * 22 20 18 26 26 C 1.43450 * 111.40378 * 317.59032 * 5 4 2 27 27 C 1.52287 * 104.91073 * 100.56826 * 26 5 4 28 28 S 1.74917 * 114.45684 * 267.14648 * 27 26 5 29 29 O 1.42103 * 109.46544 * 177.16732 * 28 27 26 30 30 C 1.50600 * 108.03771 * 116.54243 * 2 1 3 31 31 H 1.09001 * 109.46980 * 176.56811 * 1 2 3 32 32 H 1.09006 * 109.46894 * 56.57323 * 1 2 3 33 33 H 1.08997 * 109.47322 * 296.57118 * 1 2 3 34 34 H 1.08992 * 107.84734 * 313.60875 * 4 2 1 35 35 H 1.09003 * 107.84462 * 69.61202 * 4 2 1 36 36 H 1.08998 * 109.47267 * 183.96689 * 6 5 4 37 37 H 1.08994 * 109.47168 * 303.97219 * 6 5 4 38 38 H 1.08009 * 120.15836 * 0.26133 * 10 9 8 39 39 H 1.07997 * 119.59360 * 179.97438 * 11 10 9 40 40 H 1.07995 * 119.71403 * 180.02562 * 12 11 10 41 41 H 1.08011 * 120.23729 * 180.02562 * 13 12 11 42 42 H 0.96995 * 120.00070 * 179.97438 * 21 20 18 43 43 H 1.08999 * 110.33873 * 219.40589 * 26 5 4 44 44 H 1.08988 * 110.34780 * 341.55647 * 26 5 4 45 45 H 1.09002 * 108.48820 * 28.43835 * 27 26 5 46 46 H 1.09003 * 108.48266 * 145.86317 * 27 26 5 47 47 H 1.08999 * 109.56014 * 330.77733 * 30 2 1 48 48 H 1.08999 * 109.56261 * 91.10307 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8648 1.0373 0.0000 4 6 2.0089 -0.6577 -1.3151 5 7 3.4359 -1.0040 -1.4208 6 6 3.7999 -1.3184 -2.8089 7 6 3.6192 -0.0918 -3.6656 8 7 3.3002 1.0245 -3.0846 9 6 3.1258 2.1693 -3.7908 10 6 2.7874 3.3710 -3.1653 11 6 2.6151 4.5089 -3.9216 12 6 2.7741 4.4774 -5.3009 13 6 3.1078 3.3039 -5.9412 14 6 3.2868 2.1410 -5.1944 15 6 3.6425 0.8611 -5.8231 16 8 3.7944 0.7690 -7.0272 17 7 3.7936 -0.2114 -5.0114 18 6 4.1257 -1.4285 -5.5482 19 1 3.6068 -2.3197 -5.2277 20 6 5.1308 -1.5154 -6.5055 21 7 6.0034 -0.5428 -6.6311 22 14 5.2392 -3.0162 -7.6125 23 1 4.4338 -2.7860 -8.8386 24 1 6.6562 -3.2528 -7.9882 25 1 4.7136 -4.2027 -6.8905 26 6 4.2681 0.0393 -0.8948 27 6 4.6623 -0.4380 0.4967 28 16 3.6091 0.1175 1.7781 29 8 4.0331 -0.4399 3.0145 30 6 1.9964 -0.6399 1.2811 31 1 -0.3633 -1.0258 -0.0615 32 1 -0.3633 0.5661 -0.8577 33 1 -0.3634 0.4597 0.9191 34 1 1.4319 -1.5708 -1.4613 35 1 1.7686 0.0200 -2.1343 36 1 4.8410 -1.6385 -2.8479 37 1 3.1595 -2.1184 -3.1801 38 1 2.6618 3.4080 -2.0932 39 1 2.3530 5.4373 -3.4361 40 1 2.6350 5.3806 -5.8765 41 1 3.2305 3.2856 -7.0142 42 1 6.7046 -0.6036 -7.2985 43 1 5.1542 0.1670 -1.5166 44 1 3.7110 0.9740 -0.8338 45 1 4.6657 -1.5280 0.5001 46 1 5.6744 -0.0921 0.7068 47 1 1.2571 -0.4704 2.0639 48 1 2.1282 -1.7109 1.1272 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253428720.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:02 Heat of formation + Delta-G solvation = -17.465173 kcal Electronic energy + Delta-G solvation = -33751.257721 eV Core-core repulsion = 29511.665038 eV Total energy + Delta-G solvation = -4239.592683 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.32177 -39.91559 -39.16130 -37.76117 -36.68344 -35.69237 -35.40181 -33.70952 -32.56508 -31.87244 -30.34754 -28.35157 -27.88196 -27.61543 -25.99278 -24.65109 -24.06498 -22.63203 -22.31317 -20.51469 -20.31685 -19.51475 -18.67843 -18.29231 -17.52158 -17.19284 -16.84586 -16.63405 -16.40473 -16.15950 -16.07266 -15.67576 -15.45600 -15.29260 -15.03722 -14.59704 -14.39659 -14.34514 -14.11475 -14.05666 -13.86255 -13.62797 -13.44864 -13.28656 -13.10856 -13.01333 -12.74842 -12.68555 -12.57034 -12.45666 -12.19872 -12.15516 -12.02247 -11.78197 -11.71302 -11.33610 -11.23233 -10.89904 -10.67014 -10.60534 -10.25756 -9.84606 -9.18029 -9.08599 -8.75918 -8.51712 -6.51418 -0.05109 0.13976 0.88215 1.32161 1.39651 1.46836 1.52974 1.77299 2.02554 2.29217 2.53842 2.88547 2.92582 3.01123 3.35101 3.41744 3.83673 3.84322 3.98296 4.08591 4.23378 4.23957 4.30755 4.33644 4.42619 4.46411 4.55245 4.58754 4.66508 4.77083 4.81429 4.90917 4.97495 5.01164 5.03907 5.10201 5.16065 5.18426 5.26345 5.36415 5.38413 5.42756 5.50778 5.60516 5.63695 5.64432 5.82141 6.04289 6.10157 6.32787 6.39979 6.62463 6.84930 7.35852 7.63494 8.44614 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.009054 B = 0.003831 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.913048 B = 7307.666347 C = 9241.852873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.056 4.056 3 H 0.102 0.898 4 C 0.047 3.953 5 N -0.516 5.516 6 C 0.128 3.872 7 C 0.329 3.671 8 N -0.540 5.540 9 C 0.146 3.854 10 C -0.118 4.118 11 C -0.071 4.071 12 C -0.151 4.151 13 C -0.072 4.072 14 C -0.240 4.240 15 C 0.497 3.503 16 O -0.561 6.561 17 N -0.368 5.368 18 C -0.402 4.402 19 H 0.121 0.879 20 C 0.037 3.963 21 N -0.856 5.856 22 Si 0.986 3.014 23 H -0.287 1.287 24 H -0.276 1.276 25 H -0.238 1.238 26 C 0.107 3.893 27 C -0.474 4.474 28 S 1.304 4.696 29 O -0.935 6.935 30 C -0.403 4.403 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.169 0.831 39 H 0.174 0.826 40 H 0.151 0.849 41 H 0.101 0.899 42 H 0.275 0.725 43 H 0.051 0.949 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.112 0.888 47 H 0.123 0.877 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.220 7.826 13.176 17.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.076 4.076 3 H 0.120 0.880 4 C -0.080 4.080 5 N -0.237 5.237 6 C -0.002 4.002 7 C 0.064 3.936 8 N -0.267 5.267 9 C 0.032 3.968 10 C -0.138 4.138 11 C -0.090 4.090 12 C -0.170 4.170 13 C -0.092 4.092 14 C -0.247 4.247 15 C 0.293 3.707 16 O -0.440 6.440 17 N -0.072 5.072 18 C -0.528 4.528 19 H 0.138 0.862 20 C -0.175 4.175 21 N -0.486 5.486 22 Si 0.808 3.192 23 H -0.213 1.213 24 H -0.201 1.201 25 H -0.160 1.160 26 C -0.023 4.023 27 C -0.613 4.613 28 S 1.506 4.494 29 O -0.930 6.930 30 C -0.541 4.541 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.187 0.813 39 H 0.191 0.809 40 H 0.169 0.831 41 H 0.120 0.880 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.119 0.881 45 H 0.103 0.897 46 H 0.130 0.870 47 H 0.141 0.859 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.696 8.097 14.204 18.519 hybrid contribution 0.962 -2.750 -3.175 4.309 sum -7.734 5.347 11.029 14.493 Atomic orbital electron populations 1.21901 0.93374 1.01806 1.02909 1.20432 0.96925 1.00629 0.89639 0.88037 1.22640 0.87142 0.99818 0.98445 1.61874 1.05099 1.41614 1.15090 1.21253 1.03225 0.90823 0.84904 1.24743 0.89842 0.96769 0.82222 1.68511 1.27539 0.96533 1.34143 1.19230 0.95452 0.94116 0.88034 1.21127 1.01737 0.89151 1.01738 1.21621 0.95340 0.99194 0.92843 1.21338 1.02679 0.96892 0.96083 1.20970 0.96763 0.92350 0.99100 1.20955 1.12754 0.94534 0.96427 1.19093 0.79257 0.85560 0.86793 1.90594 1.52327 1.85227 1.15849 1.42346 1.48840 1.10404 1.05644 1.19890 1.20604 0.85357 1.26950 0.86208 1.26323 0.92533 1.00810 0.97785 1.69892 1.12540 1.35019 1.31173 0.85068 0.77713 0.78190 0.78222 1.21299 1.20112 1.16041 1.20863 0.96871 0.94363 0.90235 1.27266 1.13485 1.09285 1.11246 1.68997 0.86313 1.15308 0.78830 1.92949 1.80587 1.82233 1.37264 1.27356 1.15227 1.07783 1.03758 0.93476 0.92430 0.90238 0.92901 0.92765 0.88337 0.88101 0.81340 0.80902 0.83118 0.88044 0.91589 0.92994 0.88134 0.89744 0.86986 0.85914 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.85 71.98 0.64 -1.28 16 2 C -0.06 -0.89 2.03 -11.01 -0.02 -0.91 16 3 H 0.10 1.15 6.79 -2.39 -0.02 1.13 16 4 C 0.05 1.08 4.24 86.80 0.37 1.45 16 5 N -0.52 -13.52 4.18 -906.99 -3.79 -17.30 16 6 C 0.13 4.20 4.37 85.56 0.37 4.58 16 7 C 0.33 12.99 6.53 137.94 0.90 13.89 16 8 N -0.54 -18.47 5.07 -179.54 -0.91 -19.38 16 9 C 0.15 5.20 6.63 39.65 0.26 5.47 16 10 C -0.12 -2.94 10.03 22.48 0.23 -2.71 16 11 C -0.07 -1.51 10.00 22.30 0.22 -1.28 16 12 C -0.15 -4.06 10.02 22.32 0.22 -3.84 16 13 C -0.07 -2.77 9.68 22.43 0.22 -2.55 16 14 C -0.24 -10.58 5.89 -19.97 -0.12 -10.70 16 15 C 0.50 26.62 6.93 86.44 0.60 27.22 16 16 O -0.56 -34.36 14.66 -4.41 -0.06 -34.42 16 17 N -0.37 -18.11 2.65 -460.24 -1.22 -19.33 16 18 C -0.40 -20.17 8.13 84.07 0.68 -19.49 16 19 H 0.12 5.43 7.06 -2.91 -0.02 5.41 16 20 C 0.04 1.91 4.39 84.98 0.37 2.29 16 21 N -0.86 -48.96 11.90 21.68 0.26 -48.71 16 22 Si 0.99 41.29 29.59 68.60 2.03 43.32 16 23 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 24 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.24 -8.80 7.11 99.48 0.71 -8.09 16 26 C 0.11 2.56 3.84 86.71 0.33 2.89 16 27 C -0.47 -10.41 5.56 71.75 0.40 -10.01 16 28 S 1.30 24.20 13.22 -56.49 -0.75 23.45 16 29 O -0.93 -30.13 18.12 -148.98 -2.70 -32.83 16 30 C -0.40 -6.74 5.84 71.20 0.42 -6.32 16 31 H 0.05 0.70 8.09 -2.39 -0.02 0.69 16 32 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.08 0.76 7.85 -2.39 -0.02 0.74 16 34 H 0.05 1.25 7.96 -2.39 -0.02 1.23 16 35 H 0.05 1.45 5.46 -2.39 -0.01 1.44 16 36 H 0.10 3.43 8.09 -2.39 -0.02 3.41 16 37 H 0.10 3.21 7.33 -2.39 -0.02 3.20 16 38 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 39 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 40 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 41 H 0.10 4.20 7.83 -2.90 -0.02 4.18 16 42 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 43 H 0.05 1.50 7.33 -2.39 -0.02 1.49 16 44 H 0.10 2.01 5.44 -2.39 -0.01 2.00 16 45 H 0.08 2.21 7.81 -4.31 -0.03 2.18 16 46 H 0.11 2.34 8.14 -4.31 -0.04 2.30 16 47 H 0.12 1.64 7.55 -2.39 -0.02 1.62 16 48 H 0.07 1.55 8.06 -2.39 -0.02 1.53 16 Total: -1.00 -81.69 385.05 -0.09 -81.78 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.96 Total: 24.72 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 6.09 Total: -1.31 kcal Atomic # 7 Polarization: -99.06 SS G_CDS: -5.66 Total: -104.72 kcal Atomic # 8 Polarization: -64.49 SS G_CDS: -2.76 Total: -67.25 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: 24.20 SS G_CDS: -0.75 Total: 23.45 kcal Total: -81.69 -0.09 -81.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253428720.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.315 kcal (2) G-P(sol) polarization free energy of solvation -81.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds