Wall clock time and date at job start Tue Mar 31 2020 05:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.34120 * 2 1 4 4 C 1.45393 * 109.40208 * 119.80059 * 2 1 3 5 5 N 1.46833 * 115.63608 * 183.69412 * 4 2 1 6 6 C 1.46900 * 110.99608 * 142.13632 * 5 4 2 7 7 C 1.50707 * 109.46980 * 170.00423 * 6 5 4 8 8 N 1.29828 * 118.34952 * 0.02562 * 7 6 5 9 9 C 1.35634 * 121.62398 * 179.97438 * 8 7 6 10 10 C 1.39630 * 121.61905 * 180.02562 * 9 8 7 11 11 C 1.37713 * 119.69487 * 179.97438 * 10 9 8 12 12 C 1.38870 * 120.82082 * 0.02562 * 11 10 9 13 13 C 1.37796 * 120.57713 * 359.97438 * 12 11 10 14 14 C 1.39369 * 119.51575 * 0.02562 * 13 12 11 15 15 C 1.46955 * 121.91001 * 180.02562 * 14 13 12 16 16 O 1.21726 * 121.28865 * 0.02562 * 15 14 13 17 17 N 1.35343 * 117.42859 * 179.97438 * 15 14 13 18 18 C 1.37103 * 119.71798 * 180.28314 * 17 15 14 19 19 H 1.07999 * 120.00346 * 134.55162 * 18 17 15 20 20 C 1.39081 * 119.99683 * 314.55374 * 18 17 15 21 21 N 1.31259 * 119.99470 * 160.77176 * 20 18 17 22 22 Si 1.86798 * 120.00228 * 340.76371 * 20 18 17 23 23 H 1.48505 * 109.46832 * 95.24533 * 22 20 18 24 24 H 1.48489 * 109.47438 * 215.24846 * 22 20 18 25 25 H 1.48502 * 109.47325 * 335.25111 * 22 20 18 26 26 C 1.45585 * 105.38429 * 262.38398 * 5 4 2 27 27 C 1.54638 * 108.47048 * 107.72955 * 26 5 4 28 28 S 1.82415 * 110.54193 * 321.26252 * 27 26 5 29 29 O 1.42099 * 109.47020 * 200.82667 * 28 27 26 30 30 C 1.55284 * 109.41047 * 240.19053 * 2 1 3 31 31 H 1.09000 * 109.46974 * 300.19747 * 1 2 3 32 32 H 1.08999 * 109.46578 * 60.19863 * 1 2 3 33 33 H 1.08998 * 109.46901 * 180.19542 * 1 2 3 34 34 H 1.09000 * 108.24938 * 62.09839 * 4 2 1 35 35 H 1.08990 * 108.09966 * 305.18157 * 4 2 1 36 36 H 1.08992 * 109.47663 * 50.00230 * 6 5 4 37 37 H 1.09009 * 109.47031 * 289.99639 * 6 5 4 38 38 H 1.08003 * 120.15271 * 359.95630 * 10 9 8 39 39 H 1.07999 * 119.58632 * 179.97438 * 11 10 9 40 40 H 1.08007 * 119.71107 * 180.02562 * 12 11 10 41 41 H 1.07992 * 120.23926 * 180.02562 * 13 12 11 42 42 H 0.97008 * 119.99210 * 180.02562 * 21 20 18 43 43 H 1.09006 * 109.63595 * 227.42499 * 26 5 4 44 44 H 1.09002 * 109.63451 * 348.03119 * 26 5 4 45 45 H 1.09001 * 109.26450 * 200.98771 * 27 26 5 46 46 H 1.08997 * 109.23470 * 81.51963 * 27 26 5 47 47 H 1.09003 * 109.42841 * 288.73209 * 30 2 1 48 48 H 1.09003 * 109.43111 * 48.62051 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8911 1.0285 0.0000 4 6 2.0131 -0.6815 1.1900 5 7 3.4701 -0.6872 1.3716 6 6 3.8246 -0.5302 2.7885 7 6 5.2991 -0.7847 2.9686 8 7 6.0051 -1.0860 1.9215 9 6 7.3370 -1.3276 2.0073 10 6 8.0963 -1.6511 0.8810 11 6 9.4464 -1.8882 1.0135 12 6 10.0640 -1.8101 2.2549 13 6 9.3363 -1.4926 3.3811 14 6 7.9687 -1.2490 3.2689 15 6 7.1425 -0.9058 4.4348 16 8 7.6256 -0.8207 5.5488 17 7 5.8240 -0.6870 4.2219 18 6 5.0108 -0.3581 5.2756 19 1 4.3009 0.4500 5.1781 20 6 5.1001 -1.0650 6.4700 21 7 4.6253 -0.5446 7.5776 22 14 5.8956 -2.7549 6.4980 23 1 7.3230 -2.6236 6.8861 24 1 5.1924 -3.6168 7.4815 25 1 5.8041 -3.3675 5.1483 26 6 3.9179 -1.9751 0.8613 27 6 4.6509 -1.7425 -0.4803 28 16 3.8089 -0.4501 -1.4541 29 8 4.1689 -0.5783 -2.8227 30 6 2.0461 -0.7281 -1.2708 31 1 -0.3633 0.5169 0.8882 32 1 -0.3632 0.5108 -0.8918 33 1 -0.3633 -1.0276 0.0035 34 1 1.6695 -1.7154 1.1544 35 1 1.5625 -0.2041 2.0600 36 1 3.2572 -1.2434 3.3862 37 1 3.5888 0.4838 3.1118 38 1 7.6269 -1.7155 -0.0895 39 1 10.0319 -2.1387 0.1413 40 1 11.1241 -1.9991 2.3382 41 1 9.8222 -1.4330 4.3437 42 1 4.6880 -1.0376 8.4107 43 1 4.5998 -2.4354 1.5764 44 1 3.0574 -2.6247 0.7009 45 1 4.6621 -2.6719 -1.0498 46 1 5.6761 -1.4313 -0.2801 47 1 1.8553 -1.7973 -1.1788 48 1 1.5257 -0.3411 -2.1469 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253428725.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:07 Heat of formation + Delta-G solvation = 25.083988 kcal Electronic energy + Delta-G solvation = -33806.924404 eV Core-core repulsion = 29569.176791 eV Total energy + Delta-G solvation = -4237.747613 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.06972 -39.08098 -37.95940 -36.81423 -35.33911 -34.79940 -33.96509 -32.38954 -30.91114 -30.74126 -29.55555 -27.50588 -27.11754 -25.98380 -24.86684 -23.10631 -22.76679 -21.45882 -20.94965 -20.31668 -18.96576 -18.12523 -17.40685 -17.06222 -16.32873 -16.06993 -15.73611 -15.32196 -15.26353 -14.81716 -14.59373 -14.33326 -14.24481 -14.07762 -13.78470 -13.58067 -13.40128 -13.24114 -13.12484 -13.03385 -12.75162 -12.68183 -12.46301 -12.26976 -12.15569 -11.74099 -11.58946 -11.39919 -11.33161 -11.28195 -11.04709 -10.90735 -10.81375 -10.74085 -10.43052 -10.25956 -9.71992 -9.53299 -9.18652 -9.03274 -8.89898 -8.61997 -8.47440 -7.67600 -7.33731 -6.85927 -4.70710 1.17685 1.33011 1.70373 2.82359 3.00788 3.01922 3.08682 3.22656 3.46518 3.51688 4.00463 4.01305 4.10985 4.43193 4.54365 4.55274 4.78918 4.89120 5.05342 5.09167 5.14141 5.17844 5.29437 5.30754 5.35763 5.40200 5.49136 5.59642 5.63139 5.64841 5.66474 5.75656 5.85032 5.89898 5.93523 5.98713 6.07104 6.12813 6.19966 6.23223 6.35803 6.49565 6.57547 6.77320 6.80102 7.03625 7.07188 7.14828 7.27895 7.34498 7.80990 8.16819 8.52534 8.79382 8.98932 10.15330 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.009500 B = 0.004294 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.761579 B = 6518.528112 C = 8959.486943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 H 0.093 0.907 4 C 0.030 3.970 5 N -0.502 5.502 6 C 0.119 3.881 7 C 0.366 3.634 8 N -0.540 5.540 9 C 0.169 3.831 10 C -0.131 4.131 11 C -0.083 4.083 12 C -0.169 4.169 13 C -0.039 4.039 14 C -0.213 4.213 15 C 0.498 3.502 16 O -0.510 6.510 17 N -0.369 5.369 18 C -0.382 4.382 19 H 0.123 0.877 20 C 0.109 3.891 21 N -0.819 5.819 22 Si 0.890 3.110 23 H -0.249 1.249 24 H -0.287 1.287 25 H -0.273 1.273 26 C 0.074 3.926 27 C -0.406 4.406 28 S 1.254 4.746 29 O -0.882 6.882 30 C -0.452 4.452 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.128 0.872 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.285 0.715 43 H 0.089 0.911 44 H 0.040 0.960 45 H 0.066 0.934 46 H 0.137 0.863 47 H 0.081 0.919 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.458 -0.502 -11.027 11.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.068 4.068 3 H 0.111 0.889 4 C -0.098 4.098 5 N -0.225 5.225 6 C -0.010 4.010 7 C 0.104 3.896 8 N -0.268 5.268 9 C 0.053 3.947 10 C -0.150 4.150 11 C -0.103 4.103 12 C -0.188 4.188 13 C -0.059 4.059 14 C -0.220 4.220 15 C 0.294 3.706 16 O -0.387 6.387 17 N -0.074 5.074 18 C -0.508 4.508 19 H 0.140 0.860 20 C -0.108 4.108 21 N -0.448 5.448 22 Si 0.717 3.283 23 H -0.173 1.173 24 H -0.214 1.214 25 H -0.197 1.197 26 C -0.056 4.056 27 C -0.545 4.545 28 S 1.453 4.547 29 O -0.877 6.877 30 C -0.589 4.589 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.130 0.870 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.058 0.942 45 H 0.085 0.915 46 H 0.155 0.845 47 H 0.100 0.900 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.785 0.602 -11.605 12.221 hybrid contribution -0.071 -3.547 0.684 3.613 sum -3.856 -2.945 -10.921 11.950 Atomic orbital electron populations 1.21832 0.94407 1.01850 1.02086 1.19564 0.95233 1.00550 0.91477 0.88884 1.21196 0.88670 1.00731 0.99176 1.62904 1.10129 1.32527 1.16989 1.21071 0.87991 1.03988 0.87971 1.22826 0.95419 0.89956 0.81379 1.68659 1.04956 1.26274 1.26890 1.18819 0.89956 0.94252 0.91647 1.20662 0.93263 1.03884 0.97233 1.21060 0.94390 0.97631 0.97222 1.20904 0.99655 1.05737 0.92504 1.20942 0.92179 0.93898 0.98834 1.20733 0.96015 1.11360 0.93909 1.18648 0.81826 0.80863 0.89221 1.90720 1.71855 1.51447 1.24652 1.42443 1.07782 1.49202 1.07931 1.19277 1.20873 1.20335 0.90305 0.86014 1.25257 0.92868 0.98582 0.94077 1.69639 1.39194 1.36945 0.99032 0.86612 0.81605 0.81346 0.78787 1.17324 1.21428 1.19745 1.22267 0.97938 0.89646 0.95728 1.27959 1.11138 1.11190 1.04227 1.71066 0.84852 1.09081 0.89671 1.92950 1.78808 1.82959 1.32993 1.27985 1.21579 1.05588 1.03716 0.91975 0.92385 0.92939 0.93491 0.90725 0.90638 0.86980 0.85461 0.86140 0.86251 0.85581 0.90409 0.89290 0.94159 0.91460 0.84474 0.89973 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.09 37.16 0.34 -0.68 16 2 C -0.05 -0.40 2.63 -92.99 -0.24 -0.64 16 3 H 0.09 0.68 8.12 -51.93 -0.42 0.26 16 4 C 0.03 0.28 3.95 -7.44 -0.03 0.25 16 5 N -0.50 -5.85 3.84 -240.67 -0.92 -6.77 16 6 C 0.12 1.68 3.95 -4.97 -0.02 1.66 16 7 C 0.37 6.69 6.78 -154.87 -1.05 5.64 16 8 N -0.54 -9.36 5.09 -8.10 -0.04 -9.40 16 9 C 0.17 3.08 6.63 -84.50 -0.56 2.52 16 10 C -0.13 -2.00 9.80 -39.25 -0.38 -2.39 16 11 C -0.08 -1.14 10.00 -39.54 -0.40 -1.54 16 12 C -0.17 -2.47 10.02 -39.51 -0.40 -2.87 16 13 C -0.04 -0.70 9.68 -39.32 -0.38 -1.09 16 14 C -0.21 -4.36 5.89 -104.78 -0.62 -4.98 16 15 C 0.50 11.78 5.86 -12.47 -0.07 11.71 16 16 O -0.51 -13.51 12.76 5.17 0.07 -13.44 16 17 N -0.37 -8.17 2.26 -59.56 -0.13 -8.30 16 18 C -0.38 -9.07 8.54 -14.88 -0.13 -9.20 16 19 H 0.12 2.83 7.37 -52.49 -0.39 2.44 16 20 C 0.11 2.76 4.86 -17.48 -0.08 2.68 16 21 N -0.82 -21.32 13.95 55.50 0.77 -20.55 16 22 Si 0.89 21.30 25.00 -169.99 -4.25 17.05 16 23 H -0.25 -6.36 6.46 56.52 0.37 -5.99 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 26 C 0.07 0.93 4.42 -3.67 -0.02 0.91 16 27 C -0.41 -5.20 6.57 38.02 0.25 -4.95 16 28 S 1.25 15.39 12.54 -107.50 -1.35 14.04 16 29 O -0.88 -16.00 18.13 -35.23 -0.64 -16.63 16 30 C -0.45 -4.51 5.27 38.37 0.20 -4.31 16 31 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.43 6.47 -51.93 -0.34 0.10 16 35 H 0.07 0.63 7.51 -51.93 -0.39 0.24 16 36 H 0.08 1.07 7.98 -51.93 -0.41 0.66 16 37 H 0.11 1.48 7.63 -51.92 -0.40 1.08 16 38 H 0.13 1.72 6.64 -52.48 -0.35 1.37 16 39 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 41 H 0.13 2.26 7.83 -52.49 -0.41 1.85 16 42 H 0.29 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.09 1.34 5.39 -51.93 -0.28 1.06 16 44 H 0.04 0.45 6.41 -51.93 -0.33 0.12 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.14 1.89 4.87 -51.93 -0.25 1.64 16 47 H 0.08 0.83 7.97 -51.78 -0.41 0.42 16 48 H 0.10 1.00 8.11 -51.77 -0.42 0.58 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -32.36 377.47 -10.91 -43.27 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.51 Total: 2.34 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -3.59 Total: -7.28 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -0.33 Total: -45.03 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.57 Total: -30.08 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.25 Total: 17.05 kcal Atomic # 16 Polarization: 15.39 SS G_CDS: -1.35 Total: 14.04 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.36 -10.91 -43.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253428725.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.349 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds