Wall clock time and date at job start Tue Mar 31 2020 05:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.62691 * 2 1 4 4 C 1.52008 * 109.78115 * 120.47077 * 2 1 3 5 5 N 1.46835 * 104.50448 * 226.10911 * 4 2 1 6 6 C 1.46901 * 110.99637 * 134.28242 * 5 4 2 7 7 C 1.50707 * 109.46940 * 198.35805 * 6 5 4 8 8 N 1.29824 * 118.34877 * 359.97360 * 7 6 5 9 9 C 1.35638 * 121.62164 * 179.71183 * 8 7 6 10 10 C 1.39637 * 121.60994 * 179.76754 * 9 8 7 11 11 C 1.37713 * 119.68904 * 180.31964 * 10 9 8 12 12 C 1.38869 * 120.82680 * 0.25497 * 11 10 9 13 13 C 1.37798 * 120.57377 * 359.97404 * 12 11 10 14 14 C 1.39371 * 119.52069 * 0.02730 * 13 12 11 15 15 C 1.46953 * 121.91699 * 179.97438 * 14 13 12 16 16 O 1.21720 * 121.29127 * 359.97438 * 15 14 13 17 17 N 1.35345 * 117.42492 * 180.02562 * 15 14 13 18 18 C 1.37102 * 119.71624 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00368 * 138.86116 * 18 17 15 20 20 C 1.39077 * 120.00149 * 318.86246 * 18 17 15 21 21 N 1.31258 * 119.99702 * 340.38457 * 20 18 17 22 22 Si 1.86794 * 120.00205 * 160.38758 * 20 18 17 23 23 H 1.48504 * 109.47430 * 90.00181 * 22 20 18 24 24 H 1.48504 * 109.46921 * 209.99856 * 22 20 18 25 25 H 1.48500 * 109.47123 * 329.99603 * 22 20 18 26 26 C 1.39448 * 117.27754 * 263.31266 * 5 4 2 27 27 C 1.55085 * 110.08431 * 64.44552 * 26 5 4 28 28 S 1.79573 * 109.79353 * 288.47737 * 27 26 5 29 29 O 1.42105 * 109.46800 * 206.06866 * 28 27 26 30 30 C 1.54476 * 109.62992 * 239.61232 * 2 1 3 31 31 H 1.09001 * 109.47264 * 180.38535 * 1 2 3 32 32 H 1.09000 * 109.47240 * 300.38897 * 1 2 3 33 33 H 1.09002 * 109.46931 * 60.38677 * 1 2 3 34 34 H 1.08999 * 110.41710 * 107.37049 * 4 2 1 35 35 H 1.08999 * 110.42581 * 344.85940 * 4 2 1 36 36 H 1.08998 * 109.47465 * 78.35453 * 6 5 4 37 37 H 1.09007 * 109.46833 * 318.35340 * 6 5 4 38 38 H 1.07996 * 120.15106 * 0.59231 * 10 9 8 39 39 H 1.07997 * 119.58470 * 180.23355 * 11 10 9 40 40 H 1.07999 * 119.71524 * 180.02562 * 12 11 10 41 41 H 1.07999 * 120.24121 * 180.02562 * 13 12 11 42 42 H 0.97005 * 120.00325 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.37337 * 184.63709 * 26 5 4 44 44 H 1.09002 * 109.37445 * 304.25908 * 26 5 4 45 45 H 1.08997 * 109.40945 * 48.57683 * 27 26 5 46 46 H 1.08999 * 109.41712 * 168.44154 * 27 26 5 47 47 H 1.09002 * 109.35339 * 81.13167 * 30 2 1 48 48 H 1.08997 * 109.24464 * 321.48435 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0444 -0.7253 1.2328 5 7 3.0962 0.1513 1.7631 6 6 2.9648 0.3109 3.2175 7 6 3.7364 1.5271 3.6611 8 7 4.3677 2.2185 2.7618 9 6 5.0777 3.3277 3.0864 10 6 5.7606 4.0685 2.1195 11 6 6.4748 5.1847 2.4942 12 6 6.5295 5.5814 3.8239 13 6 5.8680 4.8643 4.7970 14 6 5.1394 3.7313 4.4393 15 6 4.4148 2.9276 5.4335 16 8 4.4247 3.2234 6.6142 17 7 3.7369 1.8451 4.9858 18 6 3.0441 1.0624 5.8730 19 1 2.0677 0.6829 5.6103 20 6 3.5987 0.7569 7.1113 21 7 4.8930 0.8710 7.2968 22 14 2.5015 0.1843 8.5104 23 1 2.3861 -1.2958 8.4751 24 1 3.0927 0.6038 9.8065 25 1 1.1536 0.7897 8.3621 26 6 4.4125 -0.1439 1.4098 27 6 4.6041 0.0250 -0.1199 28 16 3.7618 -1.3019 -0.9884 29 8 4.3898 -1.5193 -2.2445 30 6 2.0489 -0.7360 -1.2551 31 1 -0.3634 -1.0276 0.0069 32 1 -0.3634 0.5199 0.8865 33 1 -0.3633 0.5078 -0.8935 34 1 2.4601 -1.6947 0.9579 35 1 1.2453 -0.8461 1.9642 36 1 3.3608 -0.5730 3.7174 37 1 1.9129 0.4338 3.4759 38 1 5.7251 3.7699 1.0823 39 1 6.9992 5.7586 1.7445 40 1 7.0947 6.4600 4.0976 41 1 5.9139 5.1778 5.8295 42 1 5.2799 0.6583 8.1605 43 1 5.0880 0.5310 1.9355 44 1 4.6406 -1.1720 1.6912 45 1 4.1899 0.9834 -0.4331 46 1 5.6674 -0.0053 -0.3574 47 1 2.0209 -0.0585 -2.1085 48 1 1.4112 -1.5968 -1.4562 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253428737.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:10 Heat of formation + Delta-G solvation = 12.248246 kcal Electronic energy + Delta-G solvation = -33348.718750 eV Core-core repulsion = 29110.414538 eV Total energy + Delta-G solvation = -4238.304212 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.60835 -38.88906 -37.60643 -36.32277 -35.51749 -34.65497 -33.78944 -31.97886 -30.98522 -30.38363 -29.25139 -27.41534 -26.92589 -25.84651 -25.23470 -23.03097 -22.42918 -21.13583 -20.61557 -20.36255 -18.79863 -17.88499 -17.28114 -17.00799 -15.95820 -15.86787 -15.66630 -15.39506 -15.14776 -14.88834 -14.60924 -14.23234 -14.05589 -13.90963 -13.77992 -13.63286 -13.28493 -13.07131 -12.98760 -12.91617 -12.50583 -12.39967 -12.20346 -12.13801 -11.89353 -11.77899 -11.36309 -11.30838 -11.20774 -11.10229 -10.96489 -10.88745 -10.84605 -10.75832 -10.61796 -10.49049 -9.85930 -9.60180 -8.95947 -8.78315 -8.39482 -8.38880 -8.06971 -7.84641 -7.07507 -6.73190 -4.57542 1.47247 1.49867 1.64059 2.71911 2.99024 3.09763 3.12891 3.19384 3.64103 3.78402 3.86662 3.98083 4.41707 4.64831 4.67108 4.79930 4.86352 5.05955 5.09048 5.12053 5.25932 5.35606 5.39805 5.44627 5.48475 5.52725 5.56732 5.61184 5.66969 5.73692 5.76063 5.85539 5.91975 6.03056 6.05314 6.12046 6.14255 6.22898 6.32463 6.41048 6.49259 6.67047 6.78511 6.99564 7.03971 7.10550 7.27120 7.47454 7.56372 7.74515 8.07092 8.42542 8.67614 9.14156 9.47237 10.27811 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.008478 B = 0.003764 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3301.899375 B = 7437.600621 C = 9700.903425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.068 4.068 3 H 0.096 0.904 4 C 0.054 3.946 5 N -0.552 5.552 6 C 0.131 3.869 7 C 0.358 3.642 8 N -0.546 5.546 9 C 0.167 3.833 10 C -0.131 4.131 11 C -0.090 4.090 12 C -0.176 4.176 13 C -0.039 4.039 14 C -0.209 4.209 15 C 0.519 3.481 16 O -0.502 6.502 17 N -0.351 5.351 18 C -0.385 4.385 19 H 0.108 0.892 20 C 0.080 3.920 21 N -0.798 5.798 22 Si 0.927 3.073 23 H -0.272 1.272 24 H -0.278 1.278 25 H -0.263 1.263 26 C 0.111 3.889 27 C -0.434 4.434 28 S 1.214 4.786 29 O -0.871 6.871 30 C -0.434 4.434 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.280 0.720 43 H 0.115 0.885 44 H 0.023 0.977 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.078 0.922 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 -4.228 -9.071 11.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 H 0.115 0.885 4 C -0.073 4.073 5 N -0.276 5.276 6 C 0.003 3.997 7 C 0.095 3.905 8 N -0.274 5.274 9 C 0.051 3.949 10 C -0.151 4.151 11 C -0.110 4.110 12 C -0.196 4.196 13 C -0.058 4.058 14 C -0.217 4.217 15 C 0.314 3.686 16 O -0.376 6.376 17 N -0.054 5.054 18 C -0.512 4.512 19 H 0.126 0.874 20 C -0.138 4.138 21 N -0.425 5.425 22 Si 0.751 3.249 23 H -0.198 1.198 24 H -0.203 1.203 25 H -0.188 1.188 26 C -0.020 4.020 27 C -0.574 4.574 28 S 1.416 4.584 29 O -0.866 6.866 30 C -0.571 4.571 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.141 0.859 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.140 0.860 42 H 0.091 0.909 43 H 0.133 0.867 44 H 0.041 0.959 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.097 0.903 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.467 -4.655 -9.422 11.419 hybrid contribution -0.101 1.438 0.513 1.530 sum -4.568 -3.217 -8.908 10.515 Atomic orbital electron populations 1.21875 0.94865 1.01582 1.01787 1.21286 0.95678 1.00719 0.91076 0.88540 1.22418 0.94547 0.93503 0.96878 1.57417 1.04948 1.53492 1.11759 1.20809 0.99621 0.93305 0.86014 1.22806 0.92289 0.94057 0.81311 1.68450 1.17487 1.09564 1.31916 1.18825 0.93557 0.91937 0.90553 1.20575 0.99978 0.96090 0.98484 1.20968 0.98037 0.96166 0.95853 1.20827 1.04060 1.01599 0.93072 1.20884 0.93071 0.92563 0.99289 1.20849 1.05857 1.00757 0.94240 1.18204 0.81892 0.80258 0.88270 1.90669 1.61014 1.68980 1.16905 1.42252 1.37198 1.20000 1.05936 1.19559 1.01737 1.32406 0.97456 0.87439 1.25393 0.95251 0.93969 0.99142 1.69801 1.11044 1.36519 1.25179 0.85961 0.80401 0.78480 0.80019 1.19799 1.20288 1.18762 1.20637 0.90418 0.99526 0.91401 1.27745 1.09088 1.15110 1.05427 1.70222 0.86269 1.02544 0.99396 1.93057 1.71833 1.77145 1.44598 1.28187 1.17867 1.07449 1.03627 0.92693 0.92068 0.93158 0.92192 0.89244 0.90818 0.88340 0.85948 0.86653 0.86706 0.85973 0.90927 0.86722 0.95879 0.87823 0.87727 0.90277 0.87034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.88 37.16 0.33 -0.82 16 2 C -0.07 -0.63 2.53 -90.35 -0.23 -0.85 16 3 H 0.10 1.11 7.44 -51.93 -0.39 0.72 16 4 C 0.05 0.48 5.17 -4.36 -0.02 0.45 16 5 N -0.55 -6.75 3.02 -241.17 -0.73 -7.48 16 6 C 0.13 1.93 4.05 -4.97 -0.02 1.91 16 7 C 0.36 7.06 7.07 -154.87 -1.09 5.96 16 8 N -0.55 -10.60 7.18 -8.09 -0.06 -10.66 16 9 C 0.17 3.42 6.63 -84.49 -0.56 2.86 16 10 C -0.13 -2.29 10.03 -39.25 -0.39 -2.68 16 11 C -0.09 -1.42 10.00 -39.54 -0.40 -1.81 16 12 C -0.18 -2.92 10.02 -39.51 -0.40 -3.32 16 13 C -0.04 -0.77 9.68 -39.32 -0.38 -1.15 16 14 C -0.21 -4.72 5.89 -104.78 -0.62 -5.34 16 15 C 0.52 13.27 6.93 -12.47 -0.09 13.18 16 16 O -0.50 -14.22 14.27 5.17 0.07 -14.15 16 17 N -0.35 -8.21 2.68 -59.56 -0.16 -8.37 16 18 C -0.39 -8.94 8.24 -14.88 -0.12 -9.06 16 19 H 0.11 2.20 7.07 -52.49 -0.37 1.83 16 20 C 0.08 1.93 4.36 -17.49 -0.08 1.85 16 21 N -0.80 -20.99 11.54 55.50 0.64 -20.34 16 22 Si 0.93 18.54 29.60 -169.99 -5.03 13.51 16 23 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 24 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 26 C 0.11 1.40 4.70 -6.55 -0.03 1.37 16 27 C -0.43 -5.22 6.00 38.26 0.23 -4.99 16 28 S 1.21 13.09 11.47 -107.50 -1.23 11.86 16 29 O -0.87 -14.94 18.14 -35.23 -0.64 -15.58 16 30 C -0.43 -4.07 6.06 37.93 0.23 -3.84 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.39 6.04 -51.36 -0.31 0.08 16 35 H 0.09 0.69 6.92 -51.93 -0.36 0.33 16 36 H 0.07 1.08 8.01 -51.93 -0.42 0.66 16 37 H 0.10 1.32 7.03 -51.93 -0.37 0.96 16 38 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.12 2.44 7.83 -52.49 -0.41 2.03 16 42 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.12 1.82 5.37 -51.93 -0.28 1.54 16 44 H 0.02 0.25 8.12 -51.93 -0.42 -0.17 16 45 H 0.10 1.35 7.88 -51.80 -0.41 0.95 16 46 H 0.10 1.30 8.14 -51.79 -0.42 0.87 16 47 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.11 0.84 7.97 -51.93 -0.41 0.43 16 LS Contribution 388.31 15.07 5.85 5.85 Total: -1.00 -33.96 388.31 -11.57 -45.54 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.66 Total: 6.10 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -3.64 Total: -6.27 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.30 Total: -46.85 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.57 Total: -29.72 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Atomic # 16 Polarization: 13.09 SS G_CDS: -1.23 Total: 11.86 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.96 -11.57 -45.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253428737.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.784 kcal (2) G-P(sol) polarization free energy of solvation -33.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds