Wall clock time and date at job start Tue Mar 31 2020 05:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.62244 * 2 1 4 4 C 1.51998 * 109.62631 * 239.62043 * 2 1 3 5 5 N 1.46841 * 104.49689 * 133.98262 * 4 2 1 6 6 C 1.46897 * 110.99704 * 225.71963 * 5 4 2 7 7 C 1.50708 * 109.46714 * 78.57369 * 6 5 4 8 8 N 1.29828 * 118.35250 * 5.68504 * 7 6 5 9 9 C 1.35628 * 121.62343 * 180.02562 * 8 7 6 10 10 C 1.39639 * 121.61735 * 180.02562 * 9 8 7 11 11 C 1.37711 * 119.69366 * 179.97438 * 10 9 8 12 12 C 1.38879 * 120.82582 * 0.02562 * 11 10 9 13 13 C 1.37798 * 120.57126 * 359.97438 * 12 11 10 14 14 C 1.39374 * 119.51584 * 0.02562 * 13 12 11 15 15 C 1.46964 * 121.90538 * 180.25607 * 14 13 12 16 16 O 1.21719 * 121.28776 * 359.97438 * 15 14 13 17 17 N 1.35337 * 117.42179 * 180.21927 * 15 14 13 18 18 C 1.37110 * 119.71847 * 179.76616 * 17 15 14 19 19 H 1.07998 * 120.00400 * 135.91052 * 18 17 15 20 20 C 1.39076 * 119.99510 * 315.91537 * 18 17 15 21 21 N 1.31258 * 119.99722 * 154.44950 * 20 18 17 22 22 Si 1.86799 * 120.00418 * 334.44783 * 20 18 17 23 23 H 1.48495 * 109.47640 * 270.00457 * 22 20 18 24 24 H 1.48507 * 109.46852 * 30.00429 * 22 20 18 25 25 H 1.48504 * 109.47075 * 149.99844 * 22 20 18 26 26 C 1.39457 * 117.27612 * 96.68687 * 5 4 2 27 27 C 1.55075 * 110.08307 * 295.55208 * 26 5 4 28 28 S 1.79581 * 109.79737 * 71.52219 * 27 26 5 29 29 O 1.42107 * 109.46824 * 153.93410 * 28 27 26 30 30 C 1.54475 * 109.62338 * 120.56725 * 2 1 3 31 31 H 1.09001 * 109.46919 * 180.37617 * 1 2 3 32 32 H 1.08997 * 109.47643 * 300.38560 * 1 2 3 33 33 H 1.09007 * 109.47010 * 60.38367 * 1 2 3 34 34 H 1.08993 * 110.42940 * 15.23954 * 4 2 1 35 35 H 1.09005 * 110.57286 * 252.79336 * 4 2 1 36 36 H 1.08994 * 109.47751 * 318.57325 * 6 5 4 37 37 H 1.09002 * 109.46854 * 198.56970 * 6 5 4 38 38 H 1.08003 * 120.14887 * 359.96055 * 10 9 8 39 39 H 1.07995 * 119.58784 * 179.97438 * 11 10 9 40 40 H 1.07993 * 119.71445 * 180.02562 * 12 11 10 41 41 H 1.07999 * 120.23963 * 180.02562 * 13 12 11 42 42 H 0.96996 * 120.00113 * 354.91892 * 21 20 18 43 43 H 1.09000 * 109.36888 * 55.73916 * 26 5 4 44 44 H 1.08989 * 109.36898 * 175.36428 * 26 5 4 45 45 H 1.08992 * 109.42021 * 311.42353 * 27 26 5 46 46 H 1.08996 * 109.41800 * 191.61843 * 27 26 5 47 47 H 1.09003 * 109.35795 * 278.68353 * 30 2 1 48 48 H 1.08998 * 109.35590 * 38.25896 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0406 -0.7240 -1.2351 5 7 3.0939 0.1511 -1.7651 6 6 2.9606 0.3143 -3.2188 7 6 1.8690 1.3104 -3.5144 8 7 1.3166 1.9334 -2.5183 9 6 0.3282 2.8426 -2.7081 10 6 -0.2655 3.5130 -1.6367 11 6 -1.2658 4.4290 -1.8751 12 6 -1.6933 4.6952 -3.1693 13 6 -1.1231 4.0467 -4.2431 14 6 -0.1093 3.1159 -4.0237 15 6 0.5390 2.3981 -5.1303 16 8 0.2118 2.5911 -6.2867 17 7 1.5103 1.5106 -4.8134 18 6 2.1431 0.8113 -5.8086 19 1 3.2167 0.6955 -5.7886 20 6 1.4024 0.2513 -6.8439 21 7 1.9642 0.0348 -8.0103 22 14 -0.3919 -0.1930 -6.5747 23 1 -0.4874 -1.5908 -6.0827 24 1 -0.9842 0.7268 -5.5705 25 1 -1.1305 -0.0679 -7.8569 26 6 4.4100 -0.1484 -1.4143 27 6 4.6042 0.0168 0.1153 28 16 3.7597 -1.3099 0.9824 29 8 4.3891 -1.5316 2.2371 30 6 2.0488 -0.7400 1.2528 31 1 -0.3633 -1.0277 0.0067 32 1 -0.3634 0.5198 0.8865 33 1 -0.3633 0.5079 -0.8935 34 1 1.2401 -0.8410 -1.9656 35 1 2.4536 -1.6962 -0.9659 36 1 2.7091 -0.6451 -3.6707 37 1 3.9028 0.6747 -3.6318 38 1 0.0582 3.3138 -0.6258 39 1 -1.7240 4.9462 -1.0451 40 1 -2.4789 5.4174 -3.3356 41 1 -1.4595 4.2581 -5.2474 42 1 2.8729 0.3323 -8.1736 43 1 4.6349 -1.1764 -1.6984 44 1 5.0864 0.5259 -1.9395 45 1 4.1932 0.9754 0.4314 46 1 5.6679 -0.0158 0.3511 47 1 2.0239 -0.0642 2.1078 48 1 1.4095 -1.5992 1.4555 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253428746.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:14 Heat of formation + Delta-G solvation = 9.513839 kcal Electronic energy + Delta-G solvation = -33918.835024 eV Core-core repulsion = 29680.412239 eV Total energy + Delta-G solvation = -4238.422785 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.88469 -38.99263 -37.85649 -36.52160 -35.62423 -34.73155 -33.97542 -32.23700 -31.39426 -30.61894 -29.12570 -27.27920 -27.13616 -25.61692 -25.49789 -22.94894 -22.18366 -21.50892 -20.80734 -20.26746 -19.11988 -18.00301 -17.45082 -17.32415 -16.14073 -16.05403 -16.00545 -15.54953 -15.34954 -14.93771 -14.81529 -14.20839 -14.16059 -13.99417 -13.78557 -13.66111 -13.34059 -13.27451 -13.10286 -12.98343 -12.85110 -12.59878 -12.42290 -12.26117 -12.08792 -11.98297 -11.44682 -11.32331 -11.18762 -11.09116 -10.85979 -10.80820 -10.62440 -10.54509 -10.32144 -10.09663 -9.98363 -9.53269 -9.10836 -9.05326 -8.63614 -8.55274 -8.18052 -7.95194 -7.42084 -7.13604 -4.68182 1.26906 1.40649 1.40956 2.62135 2.94074 3.12202 3.29458 3.36085 3.55612 3.64973 3.71537 4.11936 4.14993 4.57193 4.68420 4.73462 4.79056 4.88384 4.92540 5.08660 5.14068 5.19865 5.26682 5.31937 5.38056 5.41930 5.57698 5.58163 5.63738 5.69991 5.74664 5.79528 5.85255 5.88229 5.95345 5.97331 6.02346 6.22510 6.24593 6.43514 6.47906 6.59778 6.62787 6.84519 6.90065 7.11947 7.26359 7.30425 7.55205 7.61762 7.82880 8.20740 8.56307 8.96771 9.12756 10.11735 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.009869 B = 0.004010 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.589034 B = 6980.045179 C = 8760.428831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.056 4.056 3 H 0.105 0.895 4 C 0.066 3.934 5 N -0.555 5.555 6 C 0.130 3.870 7 C 0.358 3.642 8 N -0.525 5.525 9 C 0.168 3.832 10 C -0.127 4.127 11 C -0.087 4.087 12 C -0.172 4.172 13 C -0.039 4.039 14 C -0.214 4.214 15 C 0.510 3.490 16 O -0.524 6.524 17 N -0.367 5.367 18 C -0.460 4.460 19 H 0.103 0.897 20 C 0.074 3.926 21 N -0.819 5.819 22 Si 1.063 2.937 23 H -0.290 1.290 24 H -0.282 1.282 25 H -0.275 1.275 26 C 0.118 3.882 27 C -0.448 4.448 28 S 1.221 4.779 29 O -0.870 6.870 30 C -0.434 4.434 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.125 0.875 42 H 0.284 0.716 43 H 0.035 0.965 44 H 0.084 0.916 45 H 0.103 0.897 46 H 0.106 0.894 47 H 0.079 0.921 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.459 -2.168 12.384 12.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.076 4.076 3 H 0.123 0.877 4 C -0.061 4.061 5 N -0.279 5.279 6 C 0.002 3.998 7 C 0.094 3.906 8 N -0.251 5.251 9 C 0.052 3.948 10 C -0.147 4.147 11 C -0.107 4.107 12 C -0.191 4.191 13 C -0.059 4.059 14 C -0.221 4.221 15 C 0.307 3.693 16 O -0.402 6.402 17 N -0.072 5.072 18 C -0.585 4.585 19 H 0.121 0.879 20 C -0.144 4.144 21 N -0.445 5.445 22 Si 0.889 3.111 23 H -0.217 1.217 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.012 4.012 27 C -0.586 4.586 28 S 1.422 4.578 29 O -0.865 6.865 30 C -0.572 4.572 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.144 0.856 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.143 0.857 42 H 0.095 0.905 43 H 0.052 0.948 44 H 0.102 0.898 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.098 0.902 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.372 -3.283 12.143 12.654 hybrid contribution 1.245 2.419 0.789 2.833 sum -0.128 -0.864 12.932 12.962 Atomic orbital electron populations 1.21828 0.94835 1.00996 1.02068 1.21165 0.95978 1.00771 0.89718 0.87701 1.22325 0.93979 0.92482 0.97362 1.57279 1.03939 1.54636 1.12048 1.20784 0.95809 0.96783 0.86452 1.23003 0.94345 0.93199 0.80008 1.68536 1.13830 1.13690 1.29061 1.18875 0.91892 0.93017 0.90987 1.20612 0.98019 0.98210 0.97813 1.21029 0.96214 0.96909 0.96572 1.20876 1.02769 1.02926 0.92515 1.20931 0.92901 0.92812 0.99231 1.20809 1.02881 1.04622 0.93823 1.18455 0.82287 0.79624 0.88949 1.90643 1.63505 1.65405 1.20666 1.42578 1.28884 1.29479 1.06277 1.20678 0.94397 1.38562 1.04894 0.87905 1.26423 1.06242 0.91225 0.90553 1.70740 1.16246 1.37963 1.19577 0.83626 0.74744 0.75028 0.77676 1.21747 1.20762 1.19979 1.20382 0.89560 0.99767 0.91522 1.27844 1.09392 1.16082 1.05301 1.70279 0.86353 1.01572 0.99632 1.93058 1.71949 1.76639 1.44887 1.28233 1.16989 1.07690 1.04302 0.93400 0.93479 0.91447 0.89432 0.92666 0.89944 0.88781 0.85615 0.86404 0.86440 0.85724 0.90485 0.94764 0.89761 0.87853 0.87574 0.90245 0.86984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.87 37.16 0.33 -1.18 16 2 C -0.06 -0.60 2.23 -90.35 -0.20 -0.80 16 3 H 0.10 1.31 7.40 -51.93 -0.38 0.93 16 4 C 0.07 0.68 4.47 -4.37 -0.02 0.66 16 5 N -0.56 -6.36 2.67 -241.19 -0.65 -7.00 16 6 C 0.13 1.85 4.00 -4.97 -0.02 1.83 16 7 C 0.36 6.60 7.11 -154.87 -1.10 5.50 16 8 N -0.53 -9.25 8.63 -8.10 -0.07 -9.32 16 9 C 0.17 3.12 6.63 -84.50 -0.56 2.56 16 10 C -0.13 -1.95 10.03 -39.25 -0.39 -2.35 16 11 C -0.09 -1.21 10.00 -39.54 -0.40 -1.61 16 12 C -0.17 -2.56 10.02 -39.51 -0.40 -2.96 16 13 C -0.04 -0.72 9.68 -39.32 -0.38 -1.10 16 14 C -0.21 -4.47 5.89 -104.77 -0.62 -5.08 16 15 C 0.51 12.26 5.24 -12.47 -0.07 12.19 16 16 O -0.52 -14.09 13.37 5.17 0.07 -14.02 16 17 N -0.37 -8.21 2.25 -59.56 -0.13 -8.34 16 18 C -0.46 -10.88 8.27 -14.88 -0.12 -11.01 16 19 H 0.10 2.37 7.49 -52.49 -0.39 1.98 16 20 C 0.07 1.89 4.67 -17.49 -0.08 1.81 16 21 N -0.82 -21.63 13.68 55.50 0.76 -20.88 16 22 Si 1.06 24.91 26.46 -169.99 -4.50 20.42 16 23 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.78 5.49 56.52 0.31 -6.47 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.12 1.10 5.14 -6.55 -0.03 1.07 16 27 C -0.45 -4.35 6.00 38.25 0.23 -4.12 16 28 S 1.22 12.14 11.47 -107.50 -1.23 10.91 16 29 O -0.87 -14.16 18.14 -35.23 -0.64 -14.80 16 30 C -0.43 -4.22 6.06 37.93 0.23 -3.99 16 31 H 0.05 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 34 H 0.09 1.04 6.96 -51.93 -0.36 0.68 16 35 H 0.06 0.40 6.05 -51.47 -0.31 0.09 16 36 H 0.08 1.15 7.62 -51.93 -0.40 0.75 16 37 H 0.09 1.28 7.14 -51.93 -0.37 0.91 16 38 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.12 2.29 7.83 -52.49 -0.41 1.87 16 42 H 0.28 7.24 8.73 -40.82 -0.36 6.88 16 43 H 0.03 0.25 8.12 -51.93 -0.42 -0.17 16 44 H 0.08 0.78 7.55 -51.94 -0.39 0.39 16 45 H 0.10 1.13 7.89 -51.81 -0.41 0.72 16 46 H 0.11 1.00 8.14 -51.80 -0.42 0.58 16 47 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.11 0.93 7.96 -51.93 -0.41 0.51 16 LS Contribution 386.25 15.07 5.82 5.82 Total: -1.00 -32.97 386.25 -11.06 -44.03 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.88 Total: 1.77 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -3.60 Total: -8.59 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -0.09 Total: -45.53 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.57 Total: -28.81 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -4.50 Total: 20.42 kcal Atomic # 16 Polarization: 12.14 SS G_CDS: -1.23 Total: 10.91 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.97 -11.06 -44.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253428746.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.545 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds