Wall clock time and date at job start Tue Mar 31 2020 05:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00254 * 2 1 4 4 H 1.48497 * 109.47366 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46854 * 300.00346 * 3 2 1 6 6 H 1.48503 * 109.46972 * 60.00321 * 3 2 1 7 7 C 1.37877 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00091 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99815 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47126 * 179.97438 * 9 7 2 11 11 N 1.28418 * 125.06820 * 264.30955 * 10 9 7 12 12 C 1.31639 * 110.81110 * 180.02562 * 11 10 9 13 13 C 1.48444 * 126.20994 * 179.97438 * 12 11 10 14 14 C 1.39312 * 120.11821 * 179.69232 * 13 12 11 15 15 C 1.38032 * 119.88099 * 179.76892 * 14 13 12 16 16 C 1.38317 * 120.11736 * 0.48853 * 15 14 13 17 17 C 1.38322 * 120.23622 * 359.79358 * 16 15 14 18 18 C 1.38020 * 120.11891 * 359.94859 * 17 16 15 19 19 C 1.40668 * 107.57855 * 359.76920 * 12 11 10 20 20 C 1.36687 * 125.06329 * 84.32939 * 10 9 7 21 21 C 1.47115 * 126.77715 * 359.94391 * 20 10 9 22 22 O 1.21661 * 120.00228 * 5.19044 * 21 20 10 23 23 N 1.34776 * 119.99872 * 185.19461 * 21 20 10 24 24 N 1.40103 * 119.99813 * 174.55434 * 23 21 20 25 25 C 1.29806 * 119.99974 * 180.02562 * 24 23 21 26 26 C 1.47444 * 119.99930 * 180.02562 * 25 24 23 27 27 C 1.40129 * 120.94162 * 359.71426 * 26 25 24 28 28 C 1.37891 * 118.97748 * 180.29976 * 27 26 25 29 29 N 1.31959 * 120.91333 * 359.97438 * 28 27 26 30 30 C 1.31952 * 122.09484 * 359.97438 * 29 28 27 31 31 C 1.37889 * 120.91765 * 0.02562 * 30 29 28 32 32 H 0.96999 * 119.99899 * 359.97438 * 1 2 3 33 33 H 1.08993 * 109.47080 * 60.00036 * 9 7 2 34 34 H 1.09001 * 109.47038 * 300.00060 * 9 7 2 35 35 H 1.08002 * 120.06036 * 0.02562 * 14 13 12 36 36 H 1.07997 * 119.93988 * 180.27889 * 15 14 13 37 37 H 1.07993 * 119.88162 * 179.76511 * 16 15 14 38 38 H 1.08000 * 119.93640 * 179.97438 * 17 16 15 39 39 H 1.08001 * 120.05697 * 180.02562 * 18 17 16 40 40 H 1.08003 * 127.35357 * 180.25854 * 19 12 11 41 41 H 0.96993 * 120.00359 * 354.55519 * 23 21 20 42 42 H 1.08000 * 119.99690 * 359.97438 * 25 24 23 43 43 H 1.08001 * 120.51015 * 0.25203 * 27 26 25 44 44 H 1.07993 * 119.54091 * 179.97438 * 28 27 26 45 45 H 1.08003 * 119.54049 * 180.02562 * 30 29 28 46 46 H 1.08004 * 120.51212 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2029 -3.6127 -0.0027 11 7 2.6032 -4.2403 -1.0491 12 6 3.4563 -5.1898 -0.7273 13 6 4.1285 -6.1205 -1.6683 14 6 5.0182 -7.0787 -1.1877 15 6 5.6369 -7.9448 -2.0666 16 6 5.3826 -7.8560 -3.4233 17 6 4.5045 -6.9026 -3.9063 18 6 3.8764 -6.0351 -3.0358 19 6 3.6188 -5.1593 0.6696 20 6 2.7972 -4.1387 1.1102 21 6 2.6052 -3.7009 2.5015 22 8 1.7816 -2.8440 2.7614 23 7 3.3416 -4.2492 3.4882 24 7 3.2413 -3.7540 4.7949 25 6 3.9509 -4.2817 5.7452 26 6 3.8450 -3.7610 7.1205 27 6 2.9891 -2.6934 7.4228 28 6 2.9264 -2.2346 8.7216 29 7 3.6570 -2.7866 9.6717 30 6 4.4748 -3.7939 9.4312 31 6 4.6009 -4.3165 8.1614 32 1 -0.4850 0.8400 0.0004 33 1 0.6247 -2.5562 -0.8919 34 1 0.6240 -2.5574 0.8880 35 1 5.2204 -7.1465 -0.1290 36 1 6.3234 -8.6909 -1.6946 37 1 5.8716 -8.5330 -4.1078 38 1 4.3097 -6.8373 -4.9666 39 1 3.1906 -5.2914 -3.4140 40 1 4.2497 -5.7980 1.2700 41 1 3.9410 -4.9865 3.2936 42 1 4.6183 -5.1027 5.5285 43 1 2.3884 -2.2365 6.6502 44 1 2.2701 -1.4120 8.9646 45 1 5.0535 -4.2148 10.2402 46 1 5.2720 -5.1413 7.9720 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254306950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:01 Heat of formation + Delta-G solvation = 149.867981 kcal Electronic energy + Delta-G solvation = -31409.036186 eV Core-core repulsion = 27073.548413 eV Total energy + Delta-G solvation = -4335.487773 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.144 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.03450 -40.27174 -39.20016 -38.77838 -36.69852 -34.14033 -33.62545 -32.46073 -31.70290 -31.41256 -30.89170 -30.25016 -29.76888 -27.04504 -25.28532 -23.90901 -23.66598 -23.27982 -22.23852 -22.13152 -21.12640 -20.44298 -19.46779 -18.08938 -17.40393 -16.90037 -16.80801 -16.33570 -15.91200 -15.77135 -15.57500 -15.29980 -15.25587 -14.63857 -14.50052 -14.37570 -14.08868 -13.95914 -13.85871 -13.62118 -13.41638 -13.18101 -13.02054 -12.83678 -12.57452 -12.26116 -11.93893 -11.69531 -11.26071 -11.08352 -11.06709 -10.87302 -10.59557 -10.38782 -10.33792 -10.23491 -10.03172 -9.82988 -9.71408 -9.40380 -9.32905 -8.88825 -8.75821 -8.62909 -8.61594 -7.82993 -6.25788 -4.32105 0.40189 0.92804 1.16525 1.46916 1.64712 2.12591 2.23999 3.05393 3.22318 3.28511 3.30942 3.41712 3.57641 3.68913 4.08445 4.16627 4.23499 4.30637 4.40690 4.55387 4.73267 4.77269 4.90105 4.94984 4.99807 5.04287 5.11313 5.16654 5.24382 5.34493 5.37948 5.52915 5.56097 5.62016 5.63196 5.78356 5.83672 5.99574 6.02476 6.13395 6.39860 6.43537 6.54322 6.62629 6.74344 6.88542 6.98652 7.04079 7.10576 7.37268 7.46457 7.67554 7.73248 7.81458 8.39213 8.61201 8.71521 9.32707 10.83601 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.005843 B = 0.002644 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4790.883480 B =10586.964636 C =14768.462798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.532 4.532 8 H 0.062 0.938 9 C 0.238 3.762 10 N -0.195 5.195 11 N -0.248 5.248 12 C 0.028 3.972 13 C 0.014 3.986 14 C -0.110 4.110 15 C -0.121 4.121 16 C -0.128 4.128 17 C -0.119 4.119 18 C -0.100 4.100 19 C -0.194 4.194 20 C -0.036 4.036 21 C 0.605 3.395 22 O -0.457 6.457 23 N -0.574 5.574 24 N -0.193 5.193 25 C 0.080 3.920 26 C 0.001 3.999 27 C -0.136 4.136 28 C 0.098 3.902 29 N -0.484 5.484 30 C 0.094 3.906 31 C -0.151 4.151 32 H 0.268 0.732 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.131 0.869 40 H 0.151 0.849 41 H 0.388 0.612 42 H 0.126 0.874 43 H 0.150 0.850 44 H 0.160 0.840 45 H 0.158 0.842 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.871 -16.021 8.582 21.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.132 4.132 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.571 4.571 8 H 0.081 0.919 9 C 0.123 3.877 10 N 0.016 4.984 11 N -0.085 5.085 12 C -0.122 4.122 13 C 0.012 3.988 14 C -0.129 4.129 15 C -0.139 4.139 16 C -0.147 4.147 17 C -0.137 4.137 18 C -0.119 4.119 19 C -0.224 4.224 20 C -0.167 4.167 21 C 0.391 3.609 22 O -0.324 6.324 23 N -0.319 5.319 24 N 0.002 4.998 25 C -0.131 4.131 26 C -0.009 4.009 27 C -0.158 4.158 28 C -0.058 4.058 29 N -0.193 5.193 30 C -0.062 4.062 31 C -0.173 4.173 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.149 0.851 40 H 0.168 0.832 41 H 0.227 0.773 42 H 0.143 0.857 43 H 0.167 0.833 44 H 0.177 0.823 45 H 0.175 0.825 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.645 -13.607 8.269 18.616 hybrid contribution 1.845 -0.800 -0.321 2.037 sum 11.490 -14.407 7.948 20.069 Atomic orbital electron populations 1.69917 1.06000 1.27626 1.48771 1.24833 0.94967 0.99298 0.94141 0.86284 0.79900 0.82524 0.77861 1.19688 1.20554 1.20487 1.21041 0.93339 0.89085 1.53587 0.91936 1.20396 0.86166 0.79740 1.01442 1.46879 1.28494 1.22750 1.00252 1.73435 1.13786 1.07163 1.14164 1.20186 1.01548 0.98616 0.91834 1.17801 0.95576 0.93695 0.91690 1.21036 0.96809 0.95253 0.99811 1.20981 1.00219 0.99284 0.93431 1.21138 0.99001 0.99015 0.95550 1.21089 0.97260 0.95752 0.99627 1.21311 0.99360 0.98892 0.92315 1.21894 1.04245 1.01484 0.94733 1.20751 1.04960 1.01526 0.89452 1.16694 0.80707 0.81444 0.82067 1.90962 1.31047 1.27903 1.82481 1.46599 1.45118 1.36404 1.03769 1.74758 1.16894 1.18493 0.89700 1.24194 0.98441 0.98987 0.91495 1.18707 0.96179 0.95346 0.90680 1.22561 0.98376 0.96052 0.98783 1.22773 0.96195 0.98286 0.88553 1.67645 1.05752 1.09347 1.36604 1.22647 0.95475 0.92543 0.95579 1.22196 1.00298 1.01435 0.93386 0.92225 0.92166 0.90352 0.85954 0.86121 0.86389 0.86046 0.85128 0.83150 0.77291 0.85691 0.83270 0.82296 0.82492 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.94 16 2 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 3 Si 0.91 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.53 -14.98 9.39 -34.44 -0.32 -15.30 16 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.24 6.22 5.42 -5.19 -0.03 6.19 16 10 N -0.20 -4.45 3.33 -58.35 -0.19 -4.65 16 11 N -0.25 -5.30 11.58 33.40 0.39 -4.91 16 12 C 0.03 0.50 6.99 -82.83 -0.58 -0.08 16 13 C 0.01 0.21 5.88 -104.89 -0.62 -0.41 16 14 C -0.11 -1.30 9.58 -39.26 -0.38 -1.68 16 15 C -0.12 -1.24 10.03 -39.63 -0.40 -1.63 16 16 C -0.13 -1.32 10.04 -39.52 -0.40 -1.71 16 17 C -0.12 -1.39 10.03 -39.63 -0.40 -1.78 16 18 C -0.10 -1.43 9.69 -39.26 -0.38 -1.81 16 19 C -0.19 -3.09 9.84 -38.67 -0.38 -3.47 16 20 C -0.04 -0.70 6.94 -82.10 -0.57 -1.27 16 21 C 0.61 11.81 7.91 -12.66 -0.10 11.71 16 22 O -0.46 -11.04 15.11 5.22 0.08 -10.96 16 23 N -0.57 -8.32 6.25 30.36 0.19 -8.13 16 24 N -0.19 -2.76 10.26 32.16 0.33 -2.43 16 25 C 0.08 0.80 10.79 -14.66 -0.16 0.64 16 26 C 0.00 0.01 5.91 -104.73 -0.62 -0.61 16 27 C -0.14 -1.50 9.66 -39.00 -0.38 -1.88 16 28 C 0.10 1.01 11.17 -17.62 -0.20 0.81 16 29 N -0.48 -5.14 10.34 -13.37 -0.14 -5.28 16 30 C 0.09 0.77 11.17 -17.63 -0.20 0.57 16 31 C -0.15 -1.12 9.90 -39.00 -0.39 -1.50 16 32 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.06 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.08 2.18 6.52 -51.93 -0.34 1.84 16 35 H 0.12 1.18 7.10 -52.49 -0.37 0.81 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 38 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.13 1.99 7.86 -52.49 -0.41 1.57 16 40 H 0.15 1.64 6.95 -52.48 -0.36 1.28 16 41 H 0.39 3.97 7.67 -182.60 -1.40 2.57 16 42 H 0.13 0.77 8.02 -52.49 -0.42 0.35 16 43 H 0.15 1.83 7.65 -52.49 -0.40 1.43 16 44 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.16 0.81 8.06 -52.48 -0.42 0.38 16 46 H 0.14 0.58 8.06 -52.48 -0.42 0.15 16 LS Contribution 411.21 15.07 6.20 6.20 Total: -1.00 -35.38 411.21 -10.23 -45.61 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.22 Total: 3.95 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -6.58 Total: -11.29 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 1.31 Total: -50.33 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.38 -10.23 -45.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254306950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.474 kcal (2) G-P(sol) polarization free energy of solvation -35.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds