Wall clock time and date at job start Tue Mar 31 2020 06:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35250 * 126.06943 * 2 1 4 4 C 1.40405 * 107.86653 * 180.15954 * 3 2 1 5 5 N 1.40187 * 125.97316 * 179.82928 * 4 3 2 6 6 C 1.34777 * 119.99937 * 359.72096 * 5 4 3 7 7 O 1.21599 * 119.99956 * 359.71828 * 6 5 4 8 8 N 1.34773 * 120.00223 * 180.02562 * 6 5 4 9 9 C 1.40143 * 120.00080 * 174.09920 * 8 6 5 10 10 C 1.38709 * 120.07705 * 335.28871 * 9 8 6 11 11 C 1.38394 * 119.96035 * 179.74429 * 10 9 8 12 12 F 1.35101 * 119.94334 * 180.28026 * 11 10 9 13 13 C 1.38463 * 120.11251 * 0.53131 * 11 10 9 14 14 C 1.38267 * 120.15033 * 359.72445 * 13 11 10 15 15 C 1.38519 * 120.03502 * 0.02562 * 14 13 11 16 16 O 1.36023 * 120.05260 * 179.97438 * 15 14 13 17 17 C 1.42902 * 117.00469 * 4.72880 * 16 15 14 18 18 C 1.52999 * 109.46954 * 84.55737 * 17 16 15 19 19 C 1.53000 * 109.47439 * 204.56364 * 17 16 15 20 20 N 1.31213 * 108.05385 * 359.56791 * 4 3 2 21 21 N 1.34971 * 126.07362 * 179.68207 * 2 1 3 22 22 C 1.46496 * 125.97007 * 359.97438 * 21 2 1 23 23 C 1.50700 * 109.46957 * 269.99601 * 22 21 2 24 24 H 1.07991 * 119.99972 * 0.02562 * 23 22 21 25 25 C 1.37876 * 119.99684 * 180.02562 * 23 22 21 26 26 N 1.31516 * 120.00232 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 119.99923 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47378 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47600 * 119.99806 * 27 25 23 30 30 H 1.48506 * 109.47212 * 239.99936 * 27 25 23 31 31 H 1.09007 * 109.46805 * 270.32056 * 1 2 3 32 32 H 1.08997 * 109.47750 * 30.31741 * 1 2 3 33 33 H 1.08997 * 109.47665 * 150.32378 * 1 2 3 34 34 H 1.07997 * 126.06714 * 0.02570 * 3 2 1 35 35 H 0.96994 * 120.00177 * 179.71247 * 5 4 3 36 36 H 0.97008 * 119.99659 * 354.10115 * 8 6 5 37 37 H 1.07998 * 120.01986 * 0.02562 * 10 9 8 38 38 H 1.07997 * 119.92943 * 179.70091 * 13 11 10 39 39 H 1.07997 * 119.97909 * 179.97438 * 14 13 11 40 40 H 1.09003 * 109.46823 * 324.56477 * 17 16 15 41 41 H 1.08998 * 109.47182 * 300.00345 * 18 17 16 42 42 H 1.09003 * 109.46751 * 60.00696 * 18 17 16 43 43 H 1.09003 * 109.46930 * 179.97438 * 18 17 16 44 44 H 1.08997 * 109.47278 * 59.99623 * 19 17 16 45 45 H 1.08996 * 109.47137 * 180.02562 * 19 17 16 46 46 H 1.09004 * 109.46701 * 300.00029 * 19 17 16 47 47 H 1.08993 * 109.47653 * 30.00115 * 22 21 2 48 48 H 1.09009 * 109.46820 * 149.99837 * 22 21 2 49 49 H 0.97004 * 119.99950 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 -0.0037 5 7 4.7737 1.4751 -0.0083 6 6 4.6369 2.8159 -0.0152 7 8 3.5275 3.3139 -0.0225 8 7 5.7296 3.6048 -0.0201 9 6 5.5910 4.9931 -0.1520 10 6 4.4689 5.5240 -0.7709 11 6 4.3320 6.8956 -0.8951 12 9 3.2363 7.4125 -1.4930 13 6 5.3185 7.7387 -0.4123 14 6 6.4414 7.2143 0.2007 15 6 6.5824 5.8427 0.3330 16 8 7.6871 5.3264 0.9356 17 6 8.6125 6.2570 1.5011 18 6 8.1560 6.6370 2.9111 19 6 10.0010 5.6181 1.5693 20 7 3.6336 -0.6575 0.0035 21 7 2.3017 -1.0909 0.0061 22 6 1.8500 -2.4845 0.0143 23 6 1.6958 -2.9541 1.4380 24 1 1.9121 -2.2816 2.2548 25 6 1.2785 -4.2423 1.6975 26 7 1.0146 -5.0611 0.7027 27 14 1.0866 -4.8242 3.4621 28 1 1.4426 -3.7199 4.3890 29 1 -0.3209 -5.2345 3.6978 30 1 1.9863 -5.9810 3.7025 31 1 -0.3633 0.0058 1.0277 32 1 -0.3634 0.8871 -0.5187 33 1 -0.3634 -0.8928 -0.5088 34 1 1.9720 2.1211 0.0004 35 1 5.6585 1.0780 -0.0064 36 1 6.6120 3.2116 0.0676 37 1 3.7004 4.8677 -1.1517 38 1 5.2109 8.8084 -0.5151 39 1 7.2094 7.8745 0.5759 40 1 8.6541 7.1513 0.8794 41 1 7.1668 7.0921 2.8625 42 1 8.1144 5.7426 3.5329 43 1 8.8620 7.3465 3.3427 44 1 10.3262 5.3474 0.5648 45 1 10.7066 6.3278 2.0011 46 1 9.9593 4.7238 2.1911 47 1 0.8913 -2.5588 -0.4987 48 1 2.5845 -3.1075 -0.4962 49 1 0.7206 -5.9673 0.8854 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275567521.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:05 Heat of formation + Delta-G solvation = 1.190875 kcal Electronic energy + Delta-G solvation = -33573.899894 eV Core-core repulsion = 28839.310205 eV Total energy + Delta-G solvation = -4734.589688 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.170 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -48.94081 -41.32110 -40.60155 -39.72254 -37.77889 -35.19330 -34.84047 -33.52815 -33.36671 -31.54492 -30.89735 -30.31049 -29.12285 -27.73349 -26.66054 -26.34229 -24.42907 -23.47697 -22.70922 -21.73307 -21.21904 -20.06313 -19.64381 -18.94316 -18.09005 -17.77895 -16.70357 -16.66195 -16.33918 -16.04815 -15.72906 -15.62414 -15.50459 -15.11057 -15.07097 -14.68338 -14.57273 -14.29746 -14.05107 -13.78928 -13.61140 -13.14213 -13.03908 -12.97300 -12.70617 -12.60354 -12.48568 -12.30890 -12.28557 -12.15900 -11.88905 -11.64913 -11.40883 -11.29118 -11.09728 -11.03142 -10.85146 -10.75325 -10.44568 -10.27626 -10.01805 -9.70409 -9.54086 -8.86940 -8.65152 -8.10103 -7.92765 -7.44654 -6.26053 -4.33429 0.84895 0.92846 2.12688 2.53242 2.68443 2.95044 3.19962 3.27906 3.33100 3.34536 3.45657 3.76538 4.03299 4.19241 4.23320 4.30836 4.34589 4.42675 4.58936 4.60653 4.88366 5.01545 5.06159 5.07860 5.17660 5.25352 5.28043 5.37670 5.51330 5.55962 5.62381 5.67777 5.70426 5.79708 5.89260 5.94490 6.11574 6.12233 6.15421 6.43845 6.49992 6.52561 6.57428 6.90604 7.01417 7.02983 7.06818 7.43807 7.66913 7.78299 7.88469 8.04280 8.36491 8.63324 8.74787 9.32931 10.81262 Molecular weight = 376.17amu Principal moments of inertia in cm(-1) A = 0.011921 B = 0.001907 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.196901 B =14678.968750 C =16250.158916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.093 3.907 3 C -0.288 4.288 4 C 0.279 3.721 5 N -0.636 5.636 6 C 0.713 3.287 7 O -0.547 6.547 8 N -0.671 5.671 9 C 0.179 3.821 10 C -0.133 4.133 11 C 0.087 3.913 12 F -0.137 7.137 13 C -0.138 4.138 14 C -0.163 4.163 15 C 0.090 3.910 16 O -0.311 6.311 17 C 0.078 3.922 18 C -0.181 4.181 19 C -0.150 4.150 20 N -0.320 5.320 21 N -0.316 5.316 22 C 0.258 3.742 23 C -0.534 4.534 24 H 0.065 0.935 25 C 0.065 3.935 26 N -0.892 5.892 27 Si 0.906 3.094 28 H -0.271 1.271 29 H -0.280 1.280 30 H -0.281 1.281 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.161 0.839 35 H 0.409 0.591 36 H 0.415 0.585 37 H 0.170 0.830 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.055 0.945 48 H 0.052 0.948 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.135 26.007 -1.313 30.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.039 4.039 3 C -0.319 4.319 4 C 0.026 3.974 5 N -0.285 5.285 6 C 0.413 3.587 7 O -0.422 6.422 8 N -0.319 5.319 9 C 0.082 3.918 10 C -0.154 4.154 11 C 0.067 3.933 12 F -0.116 7.116 13 C -0.158 4.158 14 C -0.182 4.182 15 C 0.042 3.958 16 O -0.225 6.225 17 C 0.022 3.978 18 C -0.238 4.238 19 C -0.207 4.207 20 N -0.150 5.150 21 N -0.099 5.099 22 C 0.140 3.860 23 C -0.573 4.573 24 H 0.083 0.917 25 C -0.138 4.138 26 N -0.530 5.530 27 Si 0.733 3.267 28 H -0.196 1.196 29 H -0.206 1.206 30 H -0.207 1.207 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.178 0.822 35 H 0.244 0.756 36 H 0.251 0.749 37 H 0.187 0.813 38 H 0.155 0.845 39 H 0.160 0.840 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.087 0.913 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.768 24.800 -1.361 28.897 hybrid contribution 0.291 0.086 1.017 1.062 sum 15.059 24.886 -0.343 29.090 Atomic orbital electron populations 1.20336 0.87835 1.02866 1.03200 1.21067 0.94941 0.87102 1.00787 1.21229 0.89576 0.99894 1.21243 1.18605 0.86295 0.89287 1.03258 1.41291 1.08053 1.03306 1.75835 1.15545 0.84250 0.80686 0.78198 1.90856 1.23320 1.72878 1.55122 1.42316 1.09404 1.04134 1.76017 1.16417 0.94222 0.81371 0.99766 1.21326 0.99469 0.94262 1.00384 1.17335 0.85289 0.91295 0.99367 1.91506 1.51622 1.87080 1.81358 1.20869 0.93613 1.00304 1.00996 1.20828 0.99718 0.93123 1.04544 1.18521 0.88701 0.91402 0.97169 1.86084 1.30365 1.36104 1.69957 1.22476 0.88742 0.92342 0.94227 1.22368 1.02359 1.02751 0.96335 1.21865 0.93410 1.02066 1.03342 1.77256 1.00042 1.08177 1.29573 1.48986 1.00819 1.07817 1.52238 1.19703 0.96000 0.71294 0.98962 1.21354 1.46643 0.97935 0.91362 0.91702 1.24930 0.94701 0.96065 0.98144 1.69930 1.45014 1.06934 1.31095 0.86305 0.77874 0.78774 0.83758 1.19585 1.20633 1.20673 0.90401 0.90761 0.90847 0.82151 0.75595 0.74888 0.81260 0.84514 0.84028 0.90667 0.91751 0.91260 0.90942 0.91536 0.90430 0.91277 0.92731 0.92992 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.11 36.00 0.36 -1.07 16 2 C 0.09 1.94 6.92 -82.28 -0.57 1.37 16 3 C -0.29 -5.89 9.52 -39.83 -0.38 -6.27 16 4 C 0.28 5.60 8.11 -154.37 -1.25 4.35 16 5 N -0.64 -9.71 5.45 -15.51 -0.08 -9.80 16 6 C 0.71 10.47 8.34 -86.92 -0.72 9.75 16 7 O -0.55 -9.58 10.63 5.28 0.06 -9.52 16 8 N -0.67 -7.50 5.30 -14.11 -0.07 -7.57 16 9 C 0.18 2.04 6.45 -83.50 -0.54 1.51 16 10 C -0.13 -1.67 8.70 -39.35 -0.34 -2.01 16 11 C 0.09 0.98 7.29 -39.44 -0.29 0.70 16 12 F -0.14 -1.68 17.26 2.25 0.04 -1.64 16 13 C -0.14 -1.19 10.02 -39.49 -0.40 -1.58 16 14 C -0.16 -1.27 8.50 -39.47 -0.34 -1.60 16 15 C 0.09 0.84 6.58 -39.09 -0.26 0.59 16 16 O -0.31 -2.58 9.21 -19.81 -0.18 -2.76 16 17 C 0.08 0.43 2.87 -26.73 -0.08 0.36 16 18 C -0.18 -0.97 9.35 37.16 0.35 -0.62 16 19 C -0.15 -0.65 9.56 37.16 0.36 -0.29 16 20 N -0.32 -7.31 12.59 31.44 0.40 -6.91 16 21 N -0.32 -7.46 3.59 -58.33 -0.21 -7.67 16 22 C 0.26 6.59 5.99 -5.20 -0.03 6.56 16 23 C -0.53 -14.69 9.39 -34.44 -0.32 -15.01 16 24 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 25 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 26 N -0.89 -25.00 13.29 55.43 0.74 -24.27 16 27 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 28 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 29 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 30 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 31 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.26 7.07 -51.93 -0.37 0.89 16 34 H 0.16 3.19 5.91 -52.49 -0.31 2.88 16 35 H 0.41 4.93 8.84 -40.82 -0.36 4.57 16 36 H 0.41 3.52 8.35 -40.82 -0.34 3.17 16 37 H 0.17 2.45 5.78 -52.49 -0.30 2.14 16 38 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.14 0.72 5.78 -52.49 -0.30 0.41 16 40 H 0.08 0.32 5.85 -51.93 -0.30 0.02 16 41 H 0.06 0.39 7.61 -51.93 -0.40 0.00 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 46 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.05 1.38 7.04 -51.93 -0.37 1.01 16 48 H 0.05 1.41 8.14 -51.92 -0.42 0.99 16 49 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 412.89 15.07 6.22 6.22 Total: -1.00 -32.80 412.89 -9.07 -41.87 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.40 Total: 7.58 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -4.54 Total: -1.61 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.76 Total: -56.22 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.13 Total: -12.28 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.80 -9.07 -41.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275567521.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.058 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds