Wall clock time and date at job start Tue Mar 31 2020 06:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35250 * 126.06943 * 2 1 4 4 C 1.40405 * 107.86653 * 180.15954 * 3 2 1 5 5 N 1.40187 * 125.97316 * 179.82928 * 4 3 2 6 6 C 1.34777 * 119.99937 * 359.72096 * 5 4 3 7 7 O 1.21599 * 119.99956 * 359.71828 * 6 5 4 8 8 N 1.34773 * 120.00223 * 180.02562 * 6 5 4 9 9 C 1.40143 * 120.00080 * 174.09920 * 8 6 5 10 10 C 1.38709 * 120.07705 * 335.28871 * 9 8 6 11 11 C 1.38394 * 119.96035 * 179.74429 * 10 9 8 12 12 F 1.35101 * 119.94334 * 180.28026 * 11 10 9 13 13 C 1.38463 * 120.11251 * 0.53131 * 11 10 9 14 14 C 1.38267 * 120.15033 * 359.72445 * 13 11 10 15 15 C 1.38519 * 120.03502 * 0.02562 * 14 13 11 16 16 O 1.36023 * 120.05260 * 179.97438 * 15 14 13 17 17 C 1.42902 * 117.00469 * 4.72880 * 16 15 14 18 18 C 1.52999 * 109.46954 * 84.55737 * 17 16 15 19 19 C 1.53000 * 109.47439 * 204.56364 * 17 16 15 20 20 N 1.31213 * 108.05385 * 359.56791 * 4 3 2 21 21 N 1.34971 * 126.07362 * 179.68207 * 2 1 3 22 22 C 1.46496 * 125.97007 * 359.97438 * 21 2 1 23 23 C 1.50700 * 109.46957 * 269.99601 * 22 21 2 24 24 H 1.07991 * 119.99972 * 0.02562 * 23 22 21 25 25 C 1.37876 * 119.99684 * 180.02562 * 23 22 21 26 26 N 1.31516 * 120.00232 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 119.99923 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47378 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47600 * 119.99806 * 27 25 23 30 30 H 1.48506 * 109.47212 * 239.99936 * 27 25 23 31 31 H 1.09007 * 109.46805 * 270.32056 * 1 2 3 32 32 H 1.08997 * 109.47750 * 30.31741 * 1 2 3 33 33 H 1.08997 * 109.47665 * 150.32378 * 1 2 3 34 34 H 1.07997 * 126.06714 * 0.02570 * 3 2 1 35 35 H 0.96994 * 120.00177 * 179.71247 * 5 4 3 36 36 H 0.97008 * 119.99659 * 354.10115 * 8 6 5 37 37 H 1.07998 * 120.01986 * 0.02562 * 10 9 8 38 38 H 1.07997 * 119.92943 * 179.70091 * 13 11 10 39 39 H 1.07997 * 119.97909 * 179.97438 * 14 13 11 40 40 H 1.09003 * 109.46823 * 324.56477 * 17 16 15 41 41 H 1.08998 * 109.47182 * 300.00345 * 18 17 16 42 42 H 1.09003 * 109.46751 * 60.00696 * 18 17 16 43 43 H 1.09003 * 109.46930 * 179.97438 * 18 17 16 44 44 H 1.08997 * 109.47278 * 59.99623 * 19 17 16 45 45 H 1.08996 * 109.47137 * 180.02562 * 19 17 16 46 46 H 1.09004 * 109.46701 * 300.00029 * 19 17 16 47 47 H 1.08993 * 109.47653 * 30.00115 * 22 21 2 48 48 H 1.09009 * 109.46820 * 149.99837 * 22 21 2 49 49 H 0.97004 * 119.99950 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 -0.0037 5 7 4.7737 1.4751 -0.0083 6 6 4.6369 2.8159 -0.0152 7 8 3.5275 3.3139 -0.0225 8 7 5.7296 3.6048 -0.0201 9 6 5.5910 4.9931 -0.1520 10 6 4.4689 5.5240 -0.7709 11 6 4.3320 6.8956 -0.8951 12 9 3.2363 7.4125 -1.4930 13 6 5.3185 7.7387 -0.4123 14 6 6.4414 7.2143 0.2007 15 6 6.5824 5.8427 0.3330 16 8 7.6871 5.3264 0.9356 17 6 8.6125 6.2570 1.5011 18 6 8.1560 6.6370 2.9111 19 6 10.0010 5.6181 1.5693 20 7 3.6336 -0.6575 0.0035 21 7 2.3017 -1.0909 0.0061 22 6 1.8500 -2.4845 0.0143 23 6 1.6958 -2.9541 1.4380 24 1 1.9121 -2.2816 2.2548 25 6 1.2785 -4.2423 1.6975 26 7 1.0146 -5.0611 0.7027 27 14 1.0866 -4.8242 3.4621 28 1 1.4426 -3.7199 4.3890 29 1 -0.3209 -5.2345 3.6978 30 1 1.9863 -5.9810 3.7025 31 1 -0.3633 0.0058 1.0277 32 1 -0.3634 0.8871 -0.5187 33 1 -0.3634 -0.8928 -0.5088 34 1 1.9720 2.1211 0.0004 35 1 5.6585 1.0780 -0.0064 36 1 6.6120 3.2116 0.0676 37 1 3.7004 4.8677 -1.1517 38 1 5.2109 8.8084 -0.5151 39 1 7.2094 7.8745 0.5759 40 1 8.6541 7.1513 0.8794 41 1 7.1668 7.0921 2.8625 42 1 8.1144 5.7426 3.5329 43 1 8.8620 7.3465 3.3427 44 1 10.3262 5.3474 0.5648 45 1 10.7066 6.3278 2.0011 46 1 9.9593 4.7238 2.1911 47 1 0.8913 -2.5588 -0.4987 48 1 2.5845 -3.1075 -0.4962 49 1 0.7206 -5.9673 0.8854 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275567521.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:04 Heat of formation + Delta-G solvation = -18.141851 kcal Electronic energy + Delta-G solvation = -33574.738223 eV Core-core repulsion = 28839.310205 eV Total energy + Delta-G solvation = -4735.428018 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.170 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -49.82357 -42.52459 -41.83152 -40.77592 -38.55857 -36.50024 -35.97939 -35.32146 -33.99924 -33.09582 -32.62928 -31.21165 -29.97004 -28.52684 -28.09032 -27.88680 -25.49356 -24.80536 -23.93625 -22.76847 -21.93680 -21.47126 -21.08466 -19.82244 -19.13699 -18.79689 -18.69833 -17.70596 -17.50105 -17.15282 -16.87351 -16.65980 -16.50759 -16.32783 -16.12520 -15.89117 -15.68828 -15.64580 -15.24693 -14.73508 -14.53422 -14.35803 -14.23180 -13.82114 -13.81010 -13.70360 -13.55280 -13.50482 -13.19502 -13.11521 -13.06549 -12.88600 -12.78014 -12.67883 -12.49480 -12.27197 -12.14817 -11.81719 -11.62131 -11.60220 -11.46282 -11.39731 -11.04712 -10.73710 -9.73996 -9.59746 -9.18539 -8.79708 -8.32957 -6.50373 0.04310 0.14468 0.89642 1.00178 1.36658 1.38286 1.50620 1.56452 1.94657 2.09460 2.22487 2.34513 2.59274 2.87257 2.96752 3.33677 3.67315 3.79188 3.83081 3.94495 4.04699 4.13706 4.15222 4.19666 4.26638 4.41261 4.54324 4.68502 4.71823 4.74376 4.81506 4.88284 4.89189 4.93932 4.94290 4.97834 4.98255 5.07629 5.08876 5.17448 5.20563 5.28942 5.33138 5.35433 5.53881 5.70691 5.73660 5.80994 5.90648 6.25182 6.36419 6.55668 6.62967 7.03188 7.19169 7.20492 8.73115 Molecular weight = 376.17amu Principal moments of inertia in cm(-1) A = 0.011921 B = 0.001907 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.196901 B =14678.968750 C =16250.158916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.088 3.912 3 C -0.297 4.297 4 C 0.291 3.709 5 N -0.627 5.627 6 C 0.714 3.286 7 O -0.576 6.576 8 N -0.653 5.653 9 C 0.154 3.846 10 C -0.150 4.150 11 C 0.065 3.935 12 F -0.148 7.148 13 C -0.121 4.121 14 C -0.153 4.153 15 C 0.100 3.900 16 O -0.320 6.320 17 C 0.069 3.931 18 C -0.180 4.180 19 C -0.148 4.148 20 N -0.355 5.355 21 N -0.341 5.341 22 C 0.275 3.725 23 C -0.551 4.551 24 H 0.049 0.951 25 C 0.022 3.978 26 N -0.918 5.918 27 Si 0.971 3.029 28 H -0.274 1.274 29 H -0.267 1.267 30 H -0.274 1.274 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.167 0.833 35 H 0.424 0.576 36 H 0.428 0.572 37 H 0.143 0.857 38 H 0.167 0.833 39 H 0.178 0.822 40 H 0.096 0.904 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.094 0.906 44 H 0.065 0.935 45 H 0.098 0.902 46 H 0.059 0.941 47 H 0.053 0.947 48 H 0.025 0.975 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.779 28.488 -0.036 33.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.042 4.042 3 C -0.327 4.327 4 C 0.036 3.964 5 N -0.279 5.279 6 C 0.414 3.586 7 O -0.452 6.452 8 N -0.301 5.301 9 C 0.058 3.942 10 C -0.171 4.171 11 C 0.045 3.955 12 F -0.127 7.127 13 C -0.141 4.141 14 C -0.172 4.172 15 C 0.052 3.948 16 O -0.235 6.235 17 C 0.014 3.986 18 C -0.237 4.237 19 C -0.205 4.205 20 N -0.186 5.186 21 N -0.124 5.124 22 C 0.156 3.844 23 C -0.589 4.589 24 H 0.067 0.933 25 C -0.179 4.179 26 N -0.556 5.556 27 Si 0.795 3.205 28 H -0.199 1.199 29 H -0.192 1.192 30 H -0.200 1.200 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.185 0.815 35 H 0.262 0.738 36 H 0.267 0.733 37 H 0.160 0.840 38 H 0.184 0.816 39 H 0.195 0.805 40 H 0.114 0.886 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.113 0.887 44 H 0.084 0.916 45 H 0.116 0.884 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.043 0.957 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.470 27.317 -0.091 31.898 hybrid contribution -0.081 -0.500 0.608 0.791 sum 16.389 26.817 0.516 31.433 Atomic orbital electron populations 1.20469 0.85347 1.04228 1.03963 1.21731 0.96658 0.86406 0.99401 1.21400 0.89847 0.99958 1.21536 1.18855 0.87743 0.88910 1.00912 1.41236 1.07550 1.03298 1.75797 1.15637 0.84703 0.80400 0.77849 1.90838 1.24812 1.73267 1.56292 1.42059 1.08952 1.04060 1.75075 1.16541 0.95080 0.81253 1.01366 1.21157 0.99572 0.94790 1.01612 1.17558 0.86011 0.91245 1.00719 1.91471 1.52396 1.87096 1.81764 1.21202 0.92465 1.01427 0.98972 1.21220 0.99991 0.92736 1.03205 1.18564 0.88365 0.91739 0.96130 1.86102 1.30221 1.37454 1.69693 1.22799 0.88512 0.92764 0.94481 1.22379 1.02637 1.02625 0.96089 1.21894 0.93085 1.02231 1.03324 1.77176 1.00111 1.09551 1.31733 1.48781 1.01601 1.07540 1.54468 1.19267 0.94993 0.72354 0.97805 1.21451 1.47410 0.98318 0.91738 0.93297 1.25727 0.93993 0.95912 1.02238 1.70008 1.45157 1.07402 1.33044 0.85306 0.78471 0.78075 0.78603 1.19903 1.19212 1.19952 0.89811 0.87629 0.91182 0.81547 0.73832 0.73310 0.83974 0.81590 0.80504 0.88608 0.92419 0.92660 0.88742 0.91590 0.88351 0.92229 0.92911 0.95652 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.79 10.11 71.23 0.72 -2.07 16 2 C 0.09 3.78 6.92 41.38 0.29 4.07 16 3 C -0.30 -12.33 9.52 22.11 0.21 -12.12 16 4 C 0.29 11.94 8.11 133.32 1.08 13.02 16 5 N -0.63 -19.40 5.45 -321.23 -1.75 -21.15 16 6 C 0.71 21.26 8.34 179.06 1.49 22.75 16 7 O -0.58 -20.73 10.63 -4.03 -0.04 -20.77 16 8 N -0.65 -14.44 5.30 -316.82 -1.68 -16.12 16 9 C 0.15 3.43 6.45 38.17 0.25 3.68 16 10 C -0.15 -3.84 8.70 22.42 0.19 -3.64 16 11 C 0.06 1.43 7.29 22.36 0.16 1.59 16 12 F -0.15 -3.67 17.26 44.97 0.78 -2.89 16 13 C -0.12 -1.76 10.02 22.33 0.22 -1.54 16 14 C -0.15 -1.85 8.50 22.34 0.19 -1.66 16 15 C 0.10 1.67 6.58 22.59 0.15 1.82 16 16 O -0.32 -4.58 9.21 -93.81 -0.86 -5.45 16 17 C 0.07 0.55 2.87 30.59 0.09 0.64 16 18 C -0.18 -1.41 9.35 71.98 0.67 -0.74 16 19 C -0.15 -0.87 9.56 71.98 0.69 -0.18 16 20 N -0.36 -16.76 12.59 -54.44 -0.69 -17.45 16 21 N -0.34 -16.67 3.59 -338.45 -1.22 -17.89 16 22 C 0.27 14.60 5.99 85.63 0.51 15.12 16 23 C -0.55 -31.06 9.39 25.60 0.24 -30.82 16 24 H 0.05 2.86 7.81 -2.92 -0.02 2.84 16 25 C 0.02 1.22 5.46 84.65 0.46 1.68 16 26 N -0.92 -51.96 13.29 21.45 0.28 -51.67 16 27 Si 0.97 43.32 29.54 68.60 2.03 45.34 16 28 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 29 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 30 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 31 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 32 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.07 2.42 7.07 -2.39 -0.02 2.40 16 34 H 0.17 6.73 5.91 -2.91 -0.02 6.71 16 35 H 0.42 10.23 8.84 -92.71 -0.82 9.41 16 36 H 0.43 6.93 8.35 -92.70 -0.77 6.15 16 37 H 0.14 4.41 5.78 -2.91 -0.02 4.39 16 38 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 39 H 0.18 0.88 5.78 -2.91 -0.02 0.86 16 40 H 0.10 0.38 5.85 -2.39 -0.01 0.37 16 41 H 0.06 0.54 7.61 -2.39 -0.02 0.52 16 42 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.10 0.18 8.14 -2.39 -0.02 0.17 16 46 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 47 H 0.05 2.77 7.04 -2.39 -0.02 2.76 16 48 H 0.03 1.45 8.14 -2.38 -0.02 1.44 16 49 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -73.30 412.89 3.91 -69.39 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: -0.56 Total: 27.06 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 7.62 Total: 11.59 kcal Atomic # 7 Polarization: -119.24 SS G_CDS: -5.05 Total: -124.28 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.91 Total: -26.22 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.78 Total: -2.89 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -73.30 3.91 -69.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275567521.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.248 kcal (2) G-P(sol) polarization free energy of solvation -73.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds