Wall clock time and date at job start Tue Mar 31 2020 06:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47021 * 2 1 4 4 C 1.50701 * 109.47254 * 240.00417 * 2 1 3 5 5 H 1.07994 * 119.99999 * 245.46104 * 4 2 1 6 6 C 1.37882 * 120.00050 * 65.45171 * 4 2 1 7 7 N 1.31510 * 120.00036 * 9.62454 * 6 4 2 8 8 Si 1.86798 * 120.00012 * 189.61803 * 6 4 2 9 9 H 1.48506 * 109.47089 * 84.99722 * 8 6 4 10 10 H 1.48501 * 109.47270 * 204.99716 * 8 6 4 11 11 H 1.48503 * 109.47383 * 324.99959 * 8 6 4 12 12 N 1.46496 * 109.47120 * 120.00411 * 2 1 3 13 13 C 1.46493 * 120.00259 * 59.99839 * 12 2 1 14 14 S 1.65602 * 119.99808 * 239.99736 * 12 2 1 15 15 O 1.42103 * 106.40091 * 156.45734 * 14 12 2 16 16 O 1.42106 * 106.40096 * 23.54149 * 14 12 2 17 17 N 1.65593 * 107.22045 * 270.00042 * 14 12 2 18 18 C 1.46502 * 120.00161 * 270.00091 * 17 14 12 19 19 C 1.46503 * 119.99979 * 90.00060 * 17 14 12 20 20 C 1.52996 * 109.47051 * 95.00230 * 19 17 14 21 21 C 1.50706 * 109.47113 * 179.97438 * 20 19 17 22 22 C 1.36124 * 120.17013 * 264.99779 * 21 20 19 23 23 C 1.39338 * 120.98845 * 180.23174 * 22 21 20 24 24 C 1.36136 * 120.98438 * 359.45567 * 23 22 21 25 25 C 1.40500 * 119.65200 * 0.56343 * 24 23 22 26 26 C 1.40550 * 121.28556 * 179.74549 * 25 24 23 27 27 C 1.36088 * 119.65016 * 179.97438 * 26 25 24 28 28 C 1.39382 * 120.99746 * 0.02562 * 27 26 25 29 29 C 1.36085 * 120.98897 * 359.94864 * 28 27 26 30 30 C 1.40499 * 120.17021 * 84.97636 * 21 20 19 31 31 H 1.09003 * 109.47049 * 303.28959 * 1 2 3 32 32 H 1.09009 * 109.47292 * 63.28261 * 1 2 3 33 33 H 1.08994 * 109.47208 * 183.28591 * 1 2 3 34 34 H 0.97000 * 120.00525 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.47279 * 270.00066 * 13 12 2 36 36 H 1.09004 * 109.47208 * 29.99914 * 13 12 2 37 37 H 1.08997 * 109.47272 * 149.99777 * 13 12 2 38 38 H 1.09002 * 109.47326 * 270.00020 * 18 17 14 39 39 H 1.09000 * 109.47212 * 29.99905 * 18 17 14 40 40 H 1.08997 * 109.47088 * 149.99963 * 18 17 14 41 41 H 1.08995 * 109.47418 * 335.00109 * 19 17 14 42 42 H 1.09002 * 109.46733 * 214.99754 * 19 17 14 43 43 H 1.09003 * 109.47606 * 60.00067 * 20 19 17 44 44 H 1.09001 * 109.47316 * 300.00076 * 20 19 17 45 45 H 1.08000 * 119.50907 * 359.95961 * 22 21 20 46 46 H 1.07999 * 119.50767 * 179.71816 * 23 22 21 47 47 H 1.07992 * 120.17180 * 180.23866 * 24 23 22 48 48 H 1.07992 * 120.17286 * 359.93047 * 26 25 24 49 49 H 1.08002 * 119.50103 * 180.02562 * 27 26 25 50 50 H 1.07997 * 119.50075 * 179.97438 * 28 27 26 51 51 H 1.08008 * 120.16937 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5786 -1.6369 -1.1339 6 6 1.7944 -0.1773 -2.4797 7 7 1.3002 1.0361 -2.5936 8 14 2.1743 -1.1785 -4.0102 9 1 1.0214 -2.0606 -4.3235 10 1 2.4214 -0.2623 -5.1525 11 1 3.3822 -2.0088 -3.7715 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4279 14 16 2.9704 0.1141 2.2862 15 8 2.8227 -0.5647 3.5258 16 8 2.6903 1.4972 2.1192 17 7 4.5437 -0.1043 1.8179 18 6 5.3069 -1.2475 2.3248 19 6 5.1724 0.8458 0.8968 20 6 5.9399 1.9000 1.6970 21 6 6.5872 2.8770 0.7495 22 6 7.8804 2.7004 0.3628 23 6 8.4972 3.5958 -0.5087 24 6 7.8210 4.6670 -1.0073 25 6 6.4848 4.8824 -0.6303 26 6 5.7561 5.9799 -1.1200 27 6 4.4633 6.1563 -0.7332 28 6 3.8482 5.2641 0.1435 29 6 4.5223 4.1901 0.6374 30 6 5.8589 3.9744 0.2604 31 1 -0.3633 0.5641 0.8591 32 1 -0.3634 0.4621 -0.9180 33 1 -0.3633 -1.0259 0.0589 34 1 1.1332 1.4113 -3.4723 35 1 0.7375 -2.1444 1.9992 36 1 1.5294 -2.5969 0.4707 37 1 2.4628 -2.5819 1.9861 38 1 5.8121 -0.9662 3.2487 39 1 4.6295 -2.0789 2.5197 40 1 6.0468 -1.5480 1.5830 41 1 4.4039 1.3332 0.2971 42 1 5.8621 0.3140 0.2413 43 1 6.7086 1.4126 2.2968 44 1 5.2503 2.4318 2.3527 45 1 8.4380 1.8562 0.7405 46 1 9.5257 3.4352 -0.7962 47 1 8.3108 5.3505 -1.6848 48 1 6.2199 6.6800 -1.7990 49 1 3.9054 7.0003 -1.1113 50 1 2.8212 5.4275 0.4347 51 1 4.0326 3.5069 1.3157 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282414723.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:11 Heat of formation + Delta-G solvation = -33.521944 kcal Electronic energy + Delta-G solvation = -34060.130603 eV Core-core repulsion = 29857.956079 eV Total energy + Delta-G solvation = -4202.174524 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.161 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.32913 -36.95410 -36.70309 -36.15299 -36.04193 -35.24679 -33.53350 -32.58157 -30.26634 -30.08342 -29.20353 -28.31987 -25.95445 -25.39928 -25.16166 -23.35779 -22.78103 -22.66223 -20.76929 -20.31805 -18.38534 -17.36127 -17.16663 -16.90836 -16.76032 -16.40503 -16.02902 -15.75905 -14.97099 -14.50669 -14.34424 -14.19641 -13.86686 -13.56608 -13.44065 -13.34265 -13.30078 -13.07083 -12.86818 -12.71705 -12.59045 -12.25176 -12.17875 -12.01301 -11.83202 -11.70311 -11.58581 -11.48822 -11.23494 -11.15864 -11.08591 -11.01672 -10.86139 -10.84223 -10.59056 -10.47035 -10.41327 -10.31942 -10.06936 -9.66912 -9.37508 -8.79816 -8.45893 -8.41389 -7.99292 -7.61818 -6.13148 -4.17712 0.71309 1.20079 1.21242 2.24856 3.18459 3.23633 3.31455 3.31594 3.43624 4.06607 4.31459 4.34788 4.68980 4.86265 4.90790 4.96460 5.04890 5.14790 5.19019 5.21853 5.32562 5.36842 5.43584 5.55700 5.58461 5.62087 5.66358 5.71590 5.76706 5.82693 5.89588 5.99100 6.13623 6.15879 6.21820 6.32153 6.35884 6.40174 6.42017 6.47616 6.58584 6.61489 6.74869 6.76929 6.77557 6.89611 6.91861 7.04093 7.04395 7.23191 7.40727 7.60102 7.73102 7.92424 8.22404 8.84683 9.47280 10.93782 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.007646 B = 0.004180 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3661.224231 B = 6697.555435 C = 8133.097303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.267 3.733 3 H 0.065 0.935 4 C -0.530 4.530 5 H 0.062 0.938 6 C 0.069 3.931 7 N -0.881 5.881 8 Si 0.889 3.111 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.991 5.991 13 C 0.106 3.894 14 S 2.779 3.221 15 O -0.998 6.998 16 O -0.976 6.976 17 N -1.009 6.009 18 C 0.100 3.900 19 C 0.135 3.865 20 C -0.104 4.104 21 C -0.056 4.056 22 C -0.123 4.123 23 C -0.116 4.116 24 C -0.114 4.114 25 C -0.049 4.049 26 C -0.120 4.120 27 C -0.109 4.109 28 C -0.115 4.115 29 C -0.096 4.096 30 C -0.047 4.047 31 H 0.016 0.984 32 H 0.075 0.925 33 H 0.034 0.966 34 H 0.264 0.736 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.122 0.878 48 H 0.122 0.878 49 H 0.119 0.881 50 H 0.124 0.876 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.214 3.485 5.341 12.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.164 3.836 3 H 0.083 0.917 4 C -0.569 4.569 5 H 0.080 0.920 6 C -0.134 4.134 7 N -0.518 5.518 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.833 5.833 13 C -0.040 4.040 14 S 2.789 3.211 15 O -0.982 6.982 16 O -0.960 6.960 17 N -0.847 5.847 18 C -0.047 4.047 19 C 0.009 3.991 20 C -0.143 4.143 21 C -0.057 4.057 22 C -0.141 4.141 23 C -0.134 4.134 24 C -0.132 4.132 25 C -0.049 4.049 26 C -0.138 4.138 27 C -0.127 4.127 28 C -0.133 4.133 29 C -0.113 4.113 30 C -0.047 4.047 31 H 0.035 0.965 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.140 0.860 48 H 0.140 0.860 49 H 0.137 0.863 50 H 0.142 0.858 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.868 4.096 5.970 13.058 hybrid contribution 0.306 -0.837 -1.482 1.729 sum 11.174 3.259 4.488 12.475 Atomic orbital electron populations 1.21984 0.98397 0.99138 1.00338 1.18734 0.91390 0.93206 0.80307 0.91701 1.21300 1.36572 1.08769 0.90248 0.91983 1.24896 0.95118 0.94571 0.98847 1.69947 1.44089 1.13611 1.24154 0.86663 0.78696 0.80143 0.82788 1.20541 1.21279 1.20023 1.57787 1.64359 1.21287 1.39868 1.21195 0.98898 0.82177 1.01775 1.01996 0.72402 0.73558 0.73145 1.93533 1.86005 1.76362 1.42251 1.93548 1.83707 1.32066 1.86727 1.57990 1.30735 1.35096 1.60841 1.21366 0.96918 0.87580 0.98793 1.21224 0.98285 0.88973 0.90583 1.21127 1.00139 0.95753 0.97320 1.19620 0.93933 0.94722 0.97451 1.20666 0.94684 0.99656 0.99059 1.20750 0.99763 0.95061 0.97802 1.20949 0.93520 0.98424 1.00302 1.18062 0.94155 0.95413 0.97307 1.20919 0.94903 0.97351 1.00586 1.20883 0.94991 0.99289 0.97511 1.20913 1.00224 0.94839 0.97348 1.21458 0.92984 0.97494 0.99410 1.18000 0.94343 0.94860 0.97460 0.96452 0.90641 0.94681 0.92616 0.93908 0.90222 0.93347 0.93097 0.91583 0.91310 0.88818 0.90433 0.90577 0.90050 0.86194 0.86341 0.86030 0.86026 0.86256 0.85775 0.83775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.12 37.16 0.34 -2.86 16 2 C 0.27 6.33 2.49 -69.09 -0.17 6.16 16 3 H 0.07 1.71 6.85 -51.93 -0.36 1.36 16 4 C -0.53 -13.27 8.01 -34.44 -0.28 -13.54 16 5 H 0.06 1.53 7.16 -52.49 -0.38 1.15 16 6 C 0.07 1.80 5.17 -17.82 -0.09 1.70 16 7 N -0.88 -23.90 12.16 55.43 0.67 -23.22 16 8 Si 0.89 20.24 29.55 -169.99 -5.02 15.22 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.99 -20.25 3.12 -115.86 -0.36 -20.61 16 13 C 0.11 1.86 9.21 59.84 0.55 2.41 16 14 S 2.78 54.03 5.96 -107.50 -0.64 53.39 16 15 O -1.00 -20.30 16.28 -57.17 -0.93 -21.23 16 16 O -0.98 -21.02 14.95 -57.17 -0.85 -21.87 16 17 N -1.01 -16.29 3.24 -121.76 -0.39 -16.69 16 18 C 0.10 1.27 10.33 59.85 0.62 1.89 16 19 C 0.14 2.16 5.35 -4.04 -0.02 2.14 16 20 C -0.10 -1.48 5.07 -27.88 -0.14 -1.62 16 21 C -0.06 -0.82 5.14 -104.53 -0.54 -1.36 16 22 C -0.12 -1.53 9.57 -39.93 -0.38 -1.91 16 23 C -0.12 -1.35 9.95 -39.93 -0.40 -1.75 16 24 C -0.11 -1.41 9.77 -39.49 -0.39 -1.80 16 25 C -0.05 -0.72 5.74 -106.83 -0.61 -1.34 16 26 C -0.12 -1.60 9.77 -39.48 -0.39 -1.99 16 27 C -0.11 -1.49 9.95 -39.93 -0.40 -1.89 16 28 C -0.12 -1.80 9.95 -39.93 -0.40 -2.20 16 29 C -0.10 -1.62 9.19 -39.49 -0.36 -1.99 16 30 C -0.05 -0.75 5.74 -106.84 -0.61 -1.36 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 1.88 6.84 -51.92 -0.36 1.52 16 33 H 0.03 0.74 7.56 -51.93 -0.39 0.35 16 34 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 1.41 6.92 -51.93 -0.36 1.05 16 37 H 0.05 0.73 7.37 -51.93 -0.38 0.35 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.83 7.37 -51.93 -0.38 0.45 16 40 H 0.07 0.74 7.94 -51.93 -0.41 0.32 16 41 H 0.09 1.79 7.52 -51.93 -0.39 1.40 16 42 H 0.08 1.13 7.96 -51.93 -0.41 0.72 16 43 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 44 H 0.08 1.23 6.71 -51.93 -0.35 0.88 16 45 H 0.12 1.21 8.05 -52.49 -0.42 0.79 16 46 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 47 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 48 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 49 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 50 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 51 H 0.14 2.59 5.75 -52.48 -0.30 2.29 16 LS Contribution 421.15 15.07 6.35 6.35 Total: -1.00 -30.60 421.15 -12.68 -43.28 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -7.83 Total: 6.67 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -3.67 Total: -21.29 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.08 Total: -60.52 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -1.79 Total: -43.10 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 54.03 SS G_CDS: -0.64 Total: 53.39 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -30.60 -12.68 -43.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282414723.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.761 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds