Wall clock time and date at job start Tue Mar 31 2020 05:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47601 * 2 1 4 4 C 1.53003 * 109.47122 * 64.99957 * 3 2 1 5 5 C 1.52998 * 109.47217 * 185.00115 * 4 3 2 6 6 N 1.46499 * 109.47605 * 185.00161 * 3 2 1 7 7 N 1.39932 * 125.74828 * 299.97814 * 6 3 2 8 8 C 1.30447 * 108.90497 * 179.75429 * 7 6 3 9 9 C 1.41302 * 108.02191 * 0.40562 * 8 7 6 10 10 C 1.47392 * 126.41877 * 179.85301 * 9 8 7 11 11 O 1.21611 * 119.99790 * 179.68994 * 10 9 8 12 12 N 1.34773 * 119.99986 * 359.68855 * 10 9 8 13 13 C 1.39178 * 119.99884 * 185.32105 * 12 10 9 14 14 C 1.39487 * 119.84497 * 325.99800 * 13 12 10 15 15 C 1.36367 * 120.18163 * 180.27688 * 14 13 12 16 16 C 1.40896 * 119.84795 * 359.48163 * 15 14 13 17 17 C 1.41139 * 120.15990 * 180.25422 * 16 15 14 18 18 H 1.08001 * 119.99126 * 323.79186 * 17 16 15 19 19 C 1.39890 * 120.00705 * 143.78953 * 17 16 15 20 20 N 1.30868 * 120.00586 * 173.59191 * 19 17 16 21 21 Si 1.86807 * 119.99896 * 353.59211 * 19 17 16 22 22 H 1.48499 * 109.47032 * 89.50873 * 21 19 17 23 23 H 1.48494 * 109.47149 * 209.51220 * 21 19 17 24 24 H 1.48504 * 109.47094 * 329.51420 * 21 19 17 25 25 C 1.40855 * 119.68529 * 0.49447 * 16 15 14 26 26 C 1.36464 * 119.82307 * 359.75715 * 25 16 15 27 27 Cl 1.73601 * 119.92749 * 180.02562 * 26 25 16 28 28 C 1.34261 * 125.75438 * 119.99381 * 6 3 2 29 29 C 1.50695 * 126.29482 * 359.97150 * 28 6 3 30 30 H 1.08991 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46968 * 300.00266 * 1 2 3 32 32 H 1.08999 * 109.46670 * 59.99673 * 1 2 3 33 33 H 1.08999 * 109.46968 * 239.99734 * 2 1 3 34 34 H 1.08999 * 109.46670 * 120.00327 * 2 1 3 35 35 H 1.09004 * 109.47178 * 305.00630 * 3 2 1 36 36 H 1.09003 * 109.47118 * 305.00369 * 4 3 2 37 37 H 1.08993 * 109.47043 * 64.99953 * 4 3 2 38 38 H 1.09001 * 109.46942 * 60.00136 * 5 4 3 39 39 H 1.09004 * 109.47063 * 180.02562 * 5 4 3 40 40 H 1.09003 * 109.47283 * 300.00152 * 5 4 3 41 41 H 1.08000 * 125.99218 * 180.24683 * 8 7 6 42 42 H 0.97003 * 120.00005 * 5.32986 * 12 10 9 43 43 H 1.07998 * 119.90819 * 0.02562 * 14 13 12 44 44 H 1.07999 * 120.07595 * 179.70718 * 15 14 13 45 45 H 0.97004 * 120.00791 * 180.02562 * 20 19 17 46 46 H 1.08007 * 120.08819 * 179.77701 * 25 16 15 47 47 H 1.09004 * 109.46980 * 269.99467 * 29 28 6 48 48 H 1.08993 * 109.47360 * 29.98852 * 29 28 6 49 49 H 1.09001 * 109.47376 * 149.99968 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 1.6354 2.1265 1.3074 5 6 2.0356 3.6023 1.2559 6 7 3.5002 1.4442 -0.1204 7 7 4.3951 0.8493 0.7759 8 6 5.6125 1.0446 0.3498 9 6 5.5420 1.7908 -0.8480 10 6 6.6817 2.2384 -1.6685 11 8 6.4855 2.8734 -2.6869 12 7 7.9412 1.9440 -1.2900 13 6 9.0203 2.4594 -2.0021 14 6 8.9189 2.6402 -3.3815 15 6 9.9739 3.1394 -4.0868 16 6 11.1651 3.4833 -3.4176 17 6 12.2591 4.0055 -4.1403 18 1 12.4717 3.6424 -5.1350 19 6 13.0680 4.9932 -3.5685 20 7 14.1534 5.3877 -4.1841 21 14 12.5989 5.7491 -1.9258 22 1 13.2011 4.9546 -0.8253 23 1 13.1020 7.1448 -1.8615 24 1 11.1206 5.7488 -1.7850 25 6 11.2608 3.2987 -2.0245 26 6 10.1988 2.7933 -1.3323 27 17 10.3135 2.5653 0.3848 28 6 4.2051 2.0170 -1.1091 29 6 3.6410 2.7684 -2.2873 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6055 1.9815 -0.8418 36 1 0.5564 2.0470 1.4402 37 1 2.1409 1.6419 2.1426 38 1 1.5301 4.0869 0.4206 39 1 1.7477 4.0895 2.1875 40 1 3.1146 3.6818 1.1231 41 1 6.5161 0.6990 0.8299 42 1 8.0957 1.3728 -0.5213 43 1 8.0039 2.3803 -3.8929 44 1 9.8952 3.2742 -5.1555 45 1 14.7145 6.0724 -3.7874 46 1 12.1721 3.5567 -1.5054 47 1 3.4623 2.0746 -3.1089 48 1 2.7020 3.2416 -2.0007 49 1 4.3509 3.5322 -2.6048 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408519793.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:41 Heat of formation + Delta-G solvation = 20.091282 kcal Electronic energy + Delta-G solvation = -31479.300229 eV Core-core repulsion = 27239.292410 eV Total energy + Delta-G solvation = -4240.007819 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.145 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.62963 -41.07059 -39.29760 -37.79265 -37.39986 -36.15184 -34.96230 -33.55668 -32.77278 -32.35818 -31.61423 -31.20911 -28.56237 -27.30449 -26.54820 -24.18788 -23.85947 -23.53924 -23.08096 -22.23551 -20.78812 -20.31130 -19.53016 -18.69683 -18.35170 -17.41067 -17.04094 -16.78041 -16.12740 -16.04762 -15.85706 -15.59767 -15.30758 -15.16950 -14.95600 -14.89940 -14.65770 -14.51037 -14.37557 -14.15774 -14.13346 -13.71532 -13.52076 -13.25284 -13.19249 -13.07378 -12.83473 -12.73944 -12.57457 -12.50558 -12.44803 -12.09557 -12.08134 -11.98574 -11.78474 -11.73582 -11.66591 -11.54798 -11.34454 -10.92518 -10.55296 -10.33805 -9.68158 -9.57030 -8.97307 -8.83703 -6.50419 0.31025 0.59261 0.69117 1.16157 1.19426 1.26222 1.31916 1.35973 1.45645 2.09338 2.30912 2.37865 2.64242 3.28981 3.32851 3.55834 3.72794 3.76013 3.90035 3.99892 4.08543 4.15834 4.22277 4.37150 4.40666 4.42451 4.50776 4.57769 4.63535 4.68060 4.70052 4.74995 4.81587 4.90226 4.94075 4.97673 5.07018 5.10292 5.13455 5.15389 5.18442 5.26950 5.34613 5.38941 5.44239 5.52890 5.67651 5.82485 5.94074 6.13747 6.25226 6.50435 6.58700 6.65420 6.76405 7.32253 8.21074 Molecular weight = 375.15amu Principal moments of inertia in cm(-1) A = 0.018437 B = 0.002131 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.302467 B =13137.211112 C =13569.345150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.148 3.852 4 C -0.128 4.128 5 C -0.154 4.154 6 N -0.344 5.344 7 N -0.306 5.306 8 C 0.081 3.919 9 C -0.318 4.318 10 C 0.589 3.411 11 O -0.564 6.564 12 N -0.645 5.645 13 C 0.045 3.955 14 C -0.070 4.070 15 C -0.188 4.188 16 C 0.077 3.923 17 C -0.472 4.472 18 H 0.067 0.933 19 C 0.050 3.950 20 N -0.853 5.853 21 Si 0.949 3.051 22 H -0.254 1.254 23 H -0.278 1.278 24 H -0.254 1.254 25 C -0.221 4.221 26 C -0.012 4.012 27 Cl -0.078 7.078 28 C 0.161 3.839 29 C -0.099 4.099 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.026 0.974 41 H 0.206 0.794 42 H 0.413 0.587 43 H 0.137 0.863 44 H 0.117 0.883 45 H 0.293 0.707 46 H 0.113 0.887 47 H 0.096 0.904 48 H 0.098 0.902 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.750 -7.914 11.905 31.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C 0.048 3.952 4 C -0.165 4.165 5 C -0.211 4.211 6 N -0.123 5.123 7 N -0.125 5.125 8 C -0.106 4.106 9 C -0.333 4.333 10 C 0.380 3.620 11 O -0.444 6.444 12 N -0.290 5.290 13 C -0.050 4.050 14 C -0.090 4.090 15 C -0.208 4.208 16 C 0.073 3.927 17 C -0.502 4.502 18 H 0.085 0.915 19 C -0.164 4.164 20 N -0.480 5.480 21 Si 0.774 3.226 22 H -0.179 1.179 23 H -0.204 1.204 24 H -0.178 1.178 25 C -0.241 4.241 26 C -0.041 4.041 27 Cl -0.049 7.049 28 C 0.027 3.973 29 C -0.156 4.156 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.142 0.858 36 H 0.130 0.870 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.045 0.955 41 H 0.223 0.777 42 H 0.250 0.750 43 H 0.154 0.846 44 H 0.135 0.865 45 H 0.104 0.896 46 H 0.130 0.870 47 H 0.115 0.885 48 H 0.116 0.884 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -28.566 -7.885 12.274 32.076 hybrid contribution 1.584 0.450 0.223 1.662 sum -26.982 -7.435 12.497 30.651 Atomic orbital electron populations 1.21800 0.92295 1.03130 1.03293 1.21784 0.98132 0.93791 1.02665 1.21983 0.72323 0.99215 1.01653 1.21934 1.03523 0.95418 0.95674 1.21782 1.00172 0.96163 1.03019 1.48861 1.07418 1.39622 1.16370 1.77061 0.99277 1.20723 1.15465 1.24317 0.96933 0.95889 0.93503 1.19829 0.92499 1.17944 1.03042 1.17570 0.82022 0.78199 0.84200 1.90682 1.85178 1.42157 1.26422 1.42653 1.03637 1.50117 1.32560 1.16965 0.87633 1.09583 0.90827 1.20738 0.98598 0.98078 0.91539 1.21059 0.92516 1.07250 0.99973 1.17790 0.92665 0.91109 0.91103 1.19355 1.08678 1.19380 1.02772 0.91501 1.26637 0.92708 0.95927 1.01126 1.69656 1.11548 1.26478 1.40296 0.85739 0.80817 0.77415 0.78678 1.17939 1.20425 1.17834 1.20653 0.98384 1.09895 0.95148 1.20240 0.95891 1.04494 0.83486 1.98276 1.98313 1.95864 1.12466 1.21767 0.90687 0.93158 0.91696 1.20736 1.02239 1.00124 0.92549 0.91666 0.91000 0.91240 0.92263 0.91713 0.85760 0.87042 0.91919 0.91139 0.91585 0.95486 0.77723 0.75009 0.84579 0.86508 0.89627 0.86984 0.88512 0.88361 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.67 71.98 0.70 -0.10 16 2 C -0.13 -1.33 5.65 30.59 0.17 -1.16 16 3 C 0.15 1.74 2.48 44.99 0.11 1.85 16 4 C -0.13 -1.34 5.40 30.59 0.17 -1.18 16 5 C -0.15 -1.92 9.80 71.98 0.71 -1.21 16 6 N -0.34 -6.52 2.70 -312.60 -0.84 -7.36 16 7 N -0.31 -6.87 12.33 -56.27 -0.69 -7.56 16 8 C 0.08 1.83 11.51 85.65 0.99 2.81 16 9 C -0.32 -8.37 6.13 -20.15 -0.12 -8.49 16 10 C 0.59 19.18 7.66 86.65 0.66 19.85 16 11 O -0.56 -21.37 12.14 -4.07 -0.05 -21.42 16 12 N -0.65 -20.95 5.02 -306.00 -1.53 -22.48 16 13 C 0.05 1.80 6.33 38.61 0.24 2.04 16 14 C -0.07 -2.95 8.63 22.13 0.19 -2.76 16 15 C -0.19 -8.71 9.74 22.48 0.22 -8.49 16 16 C 0.08 3.86 5.07 -21.28 -0.11 3.75 16 17 C -0.47 -26.03 9.59 23.38 0.22 -25.80 16 18 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 19 C 0.05 2.67 5.50 85.24 0.47 3.14 16 20 N -0.85 -46.73 13.93 21.82 0.30 -46.43 16 21 Si 0.95 43.32 24.43 68.60 1.68 44.99 16 22 H -0.25 -10.98 6.67 99.48 0.66 -10.31 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.25 -12.03 6.64 99.48 0.66 -11.36 16 25 C -0.22 -10.35 6.63 22.50 0.15 -10.20 16 26 C -0.01 -0.51 6.30 22.19 0.14 -0.37 16 27 Cl -0.08 -2.63 27.90 -2.72 -0.08 -2.71 16 28 C 0.16 3.56 7.01 42.15 0.30 3.86 16 29 C -0.10 -1.75 9.40 71.23 0.67 -1.08 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.07 0.26 6.46 -2.39 -0.02 0.25 16 32 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.12 0.96 6.63 -2.38 -0.02 0.94 16 36 H 0.11 0.59 6.34 -2.39 -0.02 0.57 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.03 0.49 7.75 -2.39 -0.02 0.47 16 41 H 0.21 3.47 7.51 -2.91 -0.02 3.45 16 42 H 0.41 11.02 6.99 -92.71 -0.65 10.37 16 43 H 0.14 5.59 6.08 -2.91 -0.02 5.57 16 44 H 0.12 5.16 8.06 -2.91 -0.02 5.13 16 45 H 0.29 14.55 8.30 -92.70 -0.77 13.78 16 46 H 0.11 5.29 4.63 -2.91 -0.01 5.28 16 47 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 48 H 0.10 1.09 7.07 -2.39 -0.02 1.07 16 49 H 0.09 2.03 6.50 -2.39 -0.02 2.02 16 Total: -1.00 -65.65 406.87 4.91 -60.73 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.26 Total: 25.78 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 5.87 Total: -23.55 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -2.77 Total: -83.84 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.05 Total: -21.42 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.68 Total: 44.99 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -0.08 Total: -2.71 kcal Total: -65.65 4.91 -60.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408519793.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.825 kcal (2) G-P(sol) polarization free energy of solvation -65.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds