Wall clock time and date at job start Tue Mar 31 2020 06:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47000 * 108.80268 * 3 2 1 5 5 N 1.46499 * 109.47147 * 179.97438 * 4 3 2 6 6 C 1.46506 * 119.99936 * 89.99619 * 5 4 3 7 7 C 1.50703 * 109.46877 * 90.00092 * 6 5 4 8 8 H 1.08005 * 119.99817 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00081 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99848 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00321 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46938 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47198 * 120.00527 * 11 9 7 14 14 H 1.48498 * 109.47360 * 240.00281 * 11 9 7 15 15 C 1.34773 * 120.00036 * 270.27655 * 5 4 3 16 16 O 1.21281 * 120.00220 * 179.72597 * 15 5 4 17 17 C 1.50706 * 120.00080 * 359.72107 * 15 5 4 18 18 N 1.46889 * 109.47109 * 180.02562 * 17 15 5 19 19 C 1.46959 * 111.00102 * 293.79785 * 18 17 15 20 20 C 1.53049 * 109.36362 * 176.81680 * 19 18 17 21 21 N 1.46955 * 109.36833 * 58.40206 * 20 19 18 22 22 C 1.38572 * 111.00047 * 176.80889 * 21 20 19 23 23 C 1.39470 * 120.51500 * 303.52242 * 22 21 20 24 24 C 1.38471 * 118.30683 * 179.75993 * 23 22 21 25 25 F 1.35103 * 120.42657 * 180.26265 * 24 23 22 26 26 N 1.32786 * 119.14004 * 0.51475 * 24 23 22 27 27 C 1.31757 * 120.96404 * 359.74070 * 26 24 23 28 28 N 1.31759 * 121.86145 * 359.97438 * 27 26 24 29 29 C 1.46955 * 110.87907 * 300.67589 * 21 20 19 30 30 C 1.46965 * 110.99870 * 170.00198 * 18 17 15 31 31 H 1.09003 * 109.47447 * 348.79961 * 3 2 1 32 32 H 1.08997 * 109.47023 * 228.80317 * 3 2 1 33 33 H 1.08994 * 109.47531 * 59.99578 * 4 3 2 34 34 H 1.09005 * 109.46544 * 299.99513 * 4 3 2 35 35 H 1.09000 * 109.46803 * 209.99571 * 6 5 4 36 36 H 1.09000 * 109.47214 * 330.00364 * 6 5 4 37 37 H 0.96998 * 119.99944 * 179.97438 * 10 9 7 38 38 H 1.09004 * 109.46762 * 300.00389 * 17 15 5 39 39 H 1.08998 * 109.46924 * 59.99727 * 17 15 5 40 40 H 1.09007 * 109.48694 * 296.78149 * 19 18 17 41 41 H 1.09001 * 109.48949 * 56.84570 * 19 18 17 42 42 H 1.09002 * 109.48821 * 298.42916 * 20 19 18 43 43 H 1.09009 * 109.50251 * 178.38247 * 20 19 18 44 44 H 1.07994 * 120.84317 * 0.02562 * 23 22 21 45 45 H 1.08002 * 119.07040 * 179.97438 * 27 26 24 46 46 H 1.08990 * 109.49170 * 299.35491 * 29 21 20 47 47 H 1.08995 * 109.50433 * 179.29789 * 29 21 20 48 48 H 1.08995 * 109.48409 * 303.15092 * 30 18 17 49 49 H 1.08997 * 109.48809 * 63.21611 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.4658 -1.3655 5 7 4.5827 0.4671 -1.3654 6 6 5.3163 -0.7335 -1.7740 7 6 5.5676 -0.6874 -3.2592 8 1 5.2164 0.1524 -3.8405 9 6 6.2468 -1.7167 -3.8757 10 7 6.6749 -2.7391 -3.1677 11 14 6.5576 -1.6600 -5.7168 12 1 5.9787 -0.4131 -6.2783 13 1 8.0202 -1.6853 -5.9729 14 1 5.9217 -2.8362 -6.3627 15 6 5.2556 1.5708 -0.9839 16 8 6.4684 1.5702 -0.9790 17 6 4.5010 2.8057 -0.5636 18 7 5.4546 3.8615 -0.1981 19 6 6.2131 3.4925 1.0054 20 6 7.2478 4.5794 1.3062 21 7 6.5629 5.8661 1.4928 22 6 7.4624 6.8621 1.8377 23 6 8.2829 6.7190 2.9565 24 6 9.1687 7.7402 3.2561 25 9 9.9870 7.6439 4.3268 26 7 9.1997 8.8176 2.4805 27 6 8.4064 8.9224 1.4338 28 7 7.5532 7.9721 1.1098 29 6 5.8045 6.2351 0.2893 30 6 4.7697 5.1483 -0.0115 31 1 2.9718 -1.0073 0.1996 32 1 2.9710 0.6777 0.7733 33 1 2.7540 1.4737 -1.5652 34 1 2.7547 -0.2114 -2.1387 35 1 6.2687 -0.7747 -1.2455 36 1 4.7280 -1.6186 -1.5323 37 1 7.1524 -3.4634 -3.6015 38 1 3.8779 3.1493 -1.3893 39 1 3.8707 2.5719 0.2944 40 1 5.5307 3.3964 1.8500 41 1 6.7212 2.5429 0.8381 42 1 7.9466 4.6567 0.4732 43 1 7.7922 4.3221 2.2149 44 1 8.2316 5.8323 3.5708 45 1 8.4570 9.8124 0.8241 46 1 6.4868 6.3313 -0.5552 47 1 5.2964 7.1848 0.4563 48 1 4.2257 5.4057 -0.9202 49 1 4.0709 5.0709 0.8215 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408522765.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:52 Heat of formation + Delta-G solvation = 16.089824 kcal Electronic energy + Delta-G solvation = -33910.198979 eV Core-core repulsion = 29208.548109 eV Total energy + Delta-G solvation = -4701.650870 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.176 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -50.31074 -42.34000 -40.99923 -39.82740 -37.96800 -37.00222 -36.43210 -34.83046 -34.02974 -32.81358 -32.11260 -31.89293 -30.34170 -28.70520 -26.34432 -26.03896 -25.25970 -24.36337 -24.25942 -23.61506 -21.07934 -19.91260 -19.53483 -19.29223 -18.76140 -18.30037 -17.84821 -17.49691 -17.37127 -17.01637 -16.72459 -16.47055 -16.32783 -16.10136 -16.02873 -15.67142 -15.48992 -15.43931 -15.30595 -15.07045 -14.77374 -14.62190 -14.41214 -14.24578 -14.00692 -13.57279 -13.49760 -13.21844 -13.06693 -13.00548 -12.79864 -12.66218 -12.51908 -12.31405 -12.27050 -12.13799 -12.10621 -11.97310 -11.78514 -11.72536 -11.58334 -10.97689 -10.66285 -10.56510 -10.40032 -9.73025 -9.42164 -9.16974 -8.15489 -6.26739 -0.30822 -0.23637 1.39878 1.43136 1.52850 1.72670 1.87052 1.97402 2.03297 2.26575 2.27546 2.45446 2.55718 2.93049 3.04463 3.15685 3.21477 3.43909 3.75514 3.79191 3.87220 3.97532 4.05635 4.12622 4.15718 4.21508 4.24310 4.35802 4.42158 4.50937 4.53824 4.56143 4.65747 4.82429 4.88001 4.90280 4.93458 5.02150 5.09945 5.15639 5.18657 5.29015 5.39034 5.66105 5.73642 5.81337 5.91237 6.01205 6.14234 6.17419 6.63820 6.81827 6.85678 6.89280 7.39317 7.63161 8.91004 Molecular weight = 376.18amu Principal moments of inertia in cm(-1) A = 0.009330 B = 0.002071 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.216943 B =13519.981066 C =15293.676394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.246 3.754 3 C -0.037 4.037 4 C 0.114 3.886 5 N -0.600 5.600 6 C 0.262 3.738 7 C -0.534 4.534 8 H 0.053 0.947 9 C 0.010 3.990 10 N -0.926 5.926 11 Si 0.954 3.046 12 H -0.268 1.268 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.502 3.498 16 O -0.570 6.570 17 C 0.047 3.953 18 N -0.547 5.547 19 C 0.058 3.942 20 C 0.071 3.929 21 N -0.469 5.469 22 C 0.379 3.621 23 C -0.264 4.264 24 C 0.360 3.640 25 F -0.103 7.103 26 N -0.592 5.592 27 C 0.360 3.640 28 N -0.570 5.570 29 C 0.073 3.927 30 C 0.059 3.941 31 H 0.119 0.881 32 H 0.136 0.864 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.005 0.995 36 H 0.032 0.968 37 H 0.264 0.736 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.042 0.958 43 H 0.107 0.893 44 H 0.177 0.823 45 H 0.241 0.759 46 H 0.049 0.951 47 H 0.102 0.898 48 H 0.103 0.897 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.688 19.855 12.401 23.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.071 4.071 3 C -0.078 4.078 4 C -0.011 4.011 5 N -0.331 5.331 6 C 0.140 3.860 7 C -0.572 4.572 8 H 0.071 0.929 9 C -0.188 4.188 10 N -0.567 5.567 11 Si 0.780 3.220 12 H -0.192 1.192 13 H -0.213 1.213 14 H -0.200 1.200 15 C 0.291 3.709 16 O -0.448 6.448 17 C -0.084 4.084 18 N -0.273 5.273 19 C -0.070 4.070 20 C -0.055 4.055 21 N -0.186 5.186 22 C 0.139 3.861 23 C -0.291 4.291 24 C 0.201 3.799 25 F -0.082 7.082 26 N -0.316 5.316 27 C 0.072 3.928 28 N -0.292 5.292 29 C -0.054 4.054 30 C -0.069 4.069 31 H 0.137 0.863 32 H 0.154 0.846 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.023 0.977 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.141 0.859 39 H 0.114 0.886 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.060 0.940 43 H 0.125 0.875 44 H 0.195 0.805 45 H 0.257 0.743 46 H 0.067 0.933 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.637 20.368 11.866 24.024 hybrid contribution 1.134 -1.278 -0.220 1.722 sum -3.503 19.090 11.646 22.635 Atomic orbital electron populations 1.81264 1.14493 1.10942 1.10194 1.29174 0.94965 0.91363 0.91628 1.19841 0.79985 1.07199 1.00803 1.21506 0.79191 1.04389 0.96010 1.48090 1.06641 1.13685 1.64723 1.18758 0.91478 0.82394 0.93337 1.21786 1.35783 1.05001 0.94676 0.92919 1.25687 0.95449 0.95263 1.02442 1.70025 1.39341 1.10015 1.37302 0.85566 0.77597 0.78231 0.80609 1.19214 1.21312 1.20044 1.21134 0.87945 0.84815 0.77025 1.90642 1.16265 1.83312 1.54630 1.22066 0.93687 0.89182 1.03440 1.61701 1.26740 1.02747 1.36087 1.22237 0.96055 0.98032 0.90694 1.22350 0.95726 0.85304 1.02097 1.59072 1.21383 1.02040 1.36087 1.20108 0.86384 0.90631 0.89026 1.22158 1.00877 1.03659 1.02370 1.18271 0.87127 0.90489 0.83984 1.91668 1.70050 1.95498 1.51016 1.67906 1.29158 1.25338 1.09173 1.25356 0.82847 0.96393 0.88176 1.68521 1.25045 1.03988 1.31641 1.22141 0.95679 0.98948 0.88612 1.22320 0.94980 0.87071 1.02509 0.86340 0.84583 0.87418 0.90042 0.97719 0.94973 0.92705 0.85876 0.88576 0.92304 0.89918 0.93992 0.87458 0.80538 0.74301 0.93277 0.87966 0.87841 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.73 18.54 20.01 0.37 -12.36 16 2 C 0.25 4.82 15.43 89.44 1.38 6.20 16 3 C -0.04 -0.58 6.02 28.79 0.17 -0.40 16 4 C 0.11 2.45 5.16 86.38 0.45 2.89 16 5 N -0.60 -19.62 2.46 -826.13 -2.03 -21.65 16 6 C 0.26 12.02 5.17 85.63 0.44 12.46 16 7 C -0.53 -27.96 9.39 25.60 0.24 -27.72 16 8 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 9 C 0.01 0.57 5.46 84.65 0.46 1.03 16 10 N -0.93 -52.87 13.29 21.45 0.28 -52.58 16 11 Si 0.95 43.12 29.54 68.60 2.03 45.14 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 13 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 15 C 0.50 16.23 7.37 87.66 0.65 16.88 16 16 O -0.57 -24.66 13.91 -3.03 -0.04 -24.71 16 17 C 0.05 0.92 4.00 85.56 0.34 1.26 16 18 N -0.55 -11.65 4.45 -900.26 -4.00 -15.65 16 19 C 0.06 1.22 5.26 86.31 0.45 1.67 16 20 C 0.07 1.35 5.38 86.31 0.46 1.81 16 21 N -0.47 -8.18 4.73 -700.90 -3.32 -11.50 16 22 C 0.38 6.91 6.40 133.10 0.85 7.76 16 23 C -0.26 -4.40 9.29 22.62 0.21 -4.19 16 24 C 0.36 6.84 8.50 84.60 0.72 7.56 16 25 F -0.10 -1.99 17.30 44.97 0.78 -1.21 16 26 N -0.59 -11.42 10.45 -201.32 -2.10 -13.52 16 27 C 0.36 5.53 12.28 180.91 2.22 7.75 16 28 N -0.57 -10.23 8.87 -197.69 -1.75 -11.99 16 29 C 0.07 1.21 4.80 86.31 0.41 1.62 16 30 C 0.06 0.87 5.61 86.31 0.48 1.35 16 31 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.14 1.33 7.20 -2.39 -0.02 1.31 16 33 H 0.11 1.63 6.45 -2.39 -0.02 1.62 16 34 H 0.08 2.01 8.07 -2.38 -0.02 1.99 16 35 H 0.00 0.25 7.41 -2.39 -0.02 0.24 16 36 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 37 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 38 H 0.12 1.94 7.29 -2.39 -0.02 1.93 16 39 H 0.10 1.22 7.14 -2.39 -0.02 1.20 16 40 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.08 2.31 5.85 -2.39 -0.01 2.30 16 42 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.11 1.62 6.87 -2.38 -0.02 1.61 16 44 H 0.18 2.20 7.27 -2.91 -0.02 2.18 16 45 H 0.24 1.72 8.06 -2.91 -0.02 1.69 16 46 H 0.05 1.01 8.06 -2.39 -0.02 0.99 16 47 H 0.10 1.51 7.84 -2.39 -0.02 1.49 16 48 H 0.10 1.25 8.07 -2.39 -0.02 1.23 16 49 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -75.77 412.74 1.16 -74.61 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 0.99 Total: 7.47 kcal Atomic # 6 Polarization: 28.00 SS G_CDS: 9.95 Total: 37.95 kcal Atomic # 7 Polarization: -126.70 SS G_CDS: -12.55 Total: -139.25 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.04 Total: -24.71 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.78 Total: -1.21 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -75.77 1.16 -74.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408522765.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.703 kcal (2) G-P(sol) polarization free energy of solvation -75.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds