Wall clock time and date at job start Tue Mar 31 2020 06:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21253 * 119.99847 * 2 1 4 4 C 1.47177 * 120.00378 * 179.97438 * 2 1 3 5 5 C 1.39876 * 120.14232 * 359.97438 * 4 2 1 6 6 C 1.37896 * 119.93816 * 180.02562 * 5 4 2 7 7 C 1.38337 * 120.23227 * 359.74724 * 6 5 4 8 8 C 1.38851 * 120.29562 * 0.51398 * 7 6 5 9 9 O 1.35908 * 119.97141 * 179.76191 * 8 7 6 10 10 C 1.42900 * 117.00268 * 359.72431 * 9 8 7 11 11 C 1.52997 * 109.47191 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.47016 * 304.99225 * 11 10 9 13 13 O 1.42895 * 109.47151 * 64.99716 * 11 10 9 14 14 C 1.52999 * 109.46914 * 185.00169 * 11 10 9 15 15 N 1.46902 * 109.47030 * 179.97438 * 14 11 10 16 16 C 1.46900 * 110.99990 * 189.99433 * 15 14 11 17 17 C 1.53241 * 109.33977 * 187.25390 * 16 15 14 18 18 N 1.47074 * 108.51879 * 306.17136 * 17 16 15 19 19 C 1.34784 * 120.88239 * 231.18421 * 18 17 16 20 20 O 1.21691 * 119.99743 * 355.17259 * 19 18 17 21 21 C 1.46372 * 120.00278 * 175.17093 * 19 18 17 22 22 H 1.08007 * 119.99803 * 13.25059 * 21 19 18 23 23 C 1.40041 * 120.00304 * 193.24972 * 21 19 18 24 24 N 1.30671 * 120.00456 * 188.99135 * 23 21 19 25 25 Si 1.86805 * 119.99799 * 8.99083 * 23 21 19 26 26 H 1.48502 * 109.46874 * 274.69864 * 25 23 21 27 27 H 1.48498 * 109.47069 * 34.70172 * 25 23 21 28 28 H 1.48501 * 109.47075 * 154.70105 * 25 23 21 29 29 C 1.47074 * 118.24054 * 51.46051 * 18 17 16 30 30 C 1.46894 * 111.00097 * 314.30036 * 15 14 11 31 31 C 1.38430 * 120.05496 * 359.48651 * 8 7 6 32 32 H 1.09005 * 109.47297 * 270.00456 * 1 2 3 33 33 H 1.08995 * 109.47156 * 30.00565 * 1 2 3 34 34 H 1.09000 * 109.47036 * 150.00819 * 1 2 3 35 35 H 1.07998 * 120.03471 * 0.02562 * 5 4 2 36 36 H 1.07998 * 119.88128 * 180.02562 * 6 5 4 37 37 H 1.07998 * 119.85448 * 180.27340 * 7 6 5 38 38 H 1.09001 * 109.46916 * 59.99680 * 10 9 8 39 39 H 1.09006 * 109.46528 * 299.99711 * 10 9 8 40 40 H 0.96699 * 114.00318 * 60.00914 * 13 11 10 41 41 H 1.08992 * 109.47519 * 59.99540 * 14 11 10 42 42 H 1.09002 * 109.47246 * 299.99272 * 14 11 10 43 43 H 1.08998 * 109.48928 * 67.29460 * 16 15 14 44 44 H 1.09002 * 109.52091 * 307.22967 * 16 15 14 45 45 H 1.09006 * 109.62663 * 186.46318 * 17 16 15 46 46 H 1.08992 * 109.78775 * 65.97899 * 17 16 15 47 47 H 0.96994 * 120.00332 * 180.02562 * 24 23 21 48 48 H 1.09005 * 109.62963 * 68.24497 * 29 18 17 49 49 H 1.08996 * 109.63328 * 188.82837 * 29 18 17 50 50 H 1.09004 * 109.49207 * 292.70423 * 30 15 14 51 51 H 1.09001 * 109.49512 * 52.76044 * 30 15 14 52 52 H 1.07999 * 120.11307 * 180.23072 * 31 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2429 -1.2745 0.0006 5 6 1.5466 -2.4877 0.0017 6 6 2.2405 -3.6794 0.0027 7 6 3.6238 -3.6800 -0.0026 8 6 4.3248 -2.4814 0.0018 9 8 5.6839 -2.4897 0.0015 10 6 6.3249 -3.7669 0.0026 11 6 7.8428 -3.5756 0.0027 12 1 8.1298 -2.9462 -0.8397 13 8 8.2441 -2.9501 1.2232 14 6 8.5284 -4.9377 -0.1218 15 7 9.9859 -4.7541 -0.1223 16 6 10.6738 -6.0030 -0.4761 17 6 12.1839 -5.8209 -0.2899 18 7 12.6096 -4.6385 -1.0539 19 6 13.6446 -4.7068 -1.9146 20 8 14.2957 -5.7310 -2.0032 21 6 13.9854 -3.5490 -2.7428 22 1 13.5584 -2.5820 -2.5211 23 6 14.8652 -3.6950 -3.8225 24 7 15.3074 -2.6391 -4.4525 25 14 15.4066 -5.3995 -4.3622 26 1 16.5711 -5.8300 -3.5473 27 1 14.2880 -6.3575 -4.1722 28 1 15.7913 -5.3658 -5.7961 29 6 11.8799 -3.3780 -0.8494 30 6 10.3780 -3.6577 -1.0178 31 6 3.6406 -1.2781 0.0007 32 1 -0.3634 0.0001 1.0277 33 1 -0.3633 0.8899 -0.5139 34 1 -0.3633 -0.8901 -0.5137 35 1 0.4667 -2.4911 0.0017 36 1 1.7019 -4.6155 0.0031 37 1 4.1610 -4.6169 -0.0062 38 1 6.0283 -4.3230 -0.8867 39 1 6.0288 -4.3211 0.8934 40 1 8.0203 -3.4558 2.0165 41 1 8.2224 -5.4149 -1.0527 42 1 8.2416 -5.5673 0.7206 43 1 10.4629 -6.2523 -1.5160 44 1 10.3221 -6.8079 0.1694 45 1 12.7073 -6.7031 -0.6587 46 1 12.4106 -5.6756 0.7663 47 1 15.9164 -2.7402 -5.2006 48 1 12.0748 -3.0009 0.1546 49 1 12.2022 -2.6443 -1.5881 50 1 10.1714 -3.9397 -2.0503 51 1 9.8115 -2.7614 -0.7652 52 1 4.1848 -0.3453 0.0003 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408524704.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:31 Heat of formation + Delta-G solvation = -148.333212 kcal Electronic energy + Delta-G solvation = -33612.957718 eV Core-core repulsion = 28963.051733 eV Total energy + Delta-G solvation = -4649.905985 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 376.188 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.47106 -40.83709 -40.31471 -39.32011 -38.22827 -37.34036 -35.13222 -35.01723 -32.72954 -32.46832 -32.13249 -31.15808 -29.84433 -29.24930 -28.00380 -25.85709 -24.82383 -24.45012 -23.41412 -22.90925 -21.90304 -20.98100 -20.55837 -18.97965 -18.74704 -18.26681 -17.79996 -17.56541 -17.06750 -16.93366 -16.80091 -16.59462 -16.23947 -16.07296 -16.04670 -15.90595 -15.77867 -15.46970 -15.34512 -15.17530 -14.71578 -14.63983 -14.31925 -14.04217 -14.00842 -13.89079 -13.53672 -13.27543 -13.22726 -13.03785 -12.90815 -12.86683 -12.81389 -12.54955 -12.46818 -12.23782 -12.15728 -12.11149 -11.98376 -11.56130 -11.39655 -11.24825 -10.98810 -10.85820 -10.10446 -10.01782 -9.54556 -9.29522 -9.15731 -8.81770 -7.03836 -0.42966 0.38479 1.29635 1.34180 1.37589 1.57240 1.94774 2.05685 2.30449 2.59347 2.75612 2.89656 3.11227 3.27998 3.50656 3.64806 3.75258 3.84827 3.90813 3.94982 4.02538 4.05274 4.09503 4.19882 4.23731 4.26891 4.31770 4.35510 4.40413 4.43701 4.45160 4.61907 4.67301 4.68571 4.75309 4.77728 4.83494 4.86821 4.92959 5.00492 5.09145 5.11938 5.14685 5.24728 5.29050 5.37946 5.65035 5.67709 5.89137 6.00787 6.01679 6.22246 6.36691 6.48544 6.59901 6.90690 7.10028 7.94386 8.23788 Molecular weight = 376.19amu Principal moments of inertia in cm(-1) A = 0.016483 B = 0.001505 C = 0.001441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.326218 B =18605.632935 C =19424.814272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.391 3.609 3 O -0.508 6.508 4 C -0.151 4.151 5 C -0.100 4.100 6 C -0.088 4.088 7 C -0.177 4.177 8 C 0.102 3.898 9 O -0.329 6.329 10 C 0.030 3.970 11 C 0.111 3.889 12 H 0.090 0.910 13 O -0.558 6.558 14 C 0.032 3.968 15 N -0.527 5.527 16 C 0.055 3.945 17 C 0.119 3.881 18 N -0.634 5.634 19 C 0.550 3.450 20 O -0.646 6.646 21 C -0.554 4.554 22 H 0.083 0.917 23 C 0.069 3.931 24 N -0.848 5.848 25 Si 1.014 2.986 26 H -0.292 1.292 27 H -0.286 1.286 28 H -0.297 1.297 29 C 0.124 3.876 30 C 0.048 3.952 31 C -0.128 4.128 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.174 0.826 36 H 0.169 0.831 37 H 0.155 0.845 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.388 0.612 41 H 0.053 0.947 42 H 0.112 0.888 43 H 0.023 0.977 44 H 0.115 0.885 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.292 0.708 48 H 0.065 0.935 49 H 0.078 0.922 50 H 0.024 0.976 51 H 0.100 0.900 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.469 -5.347 11.621 38.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.273 3.727 3 O -0.387 6.387 4 C -0.152 4.152 5 C -0.118 4.118 6 C -0.106 4.106 7 C -0.196 4.196 8 C 0.057 3.943 9 O -0.244 6.244 10 C -0.045 4.045 11 C 0.051 3.949 12 H 0.108 0.892 13 O -0.365 6.365 14 C -0.096 4.096 15 N -0.252 5.252 16 C -0.073 4.073 17 C -0.004 4.004 18 N -0.367 5.367 19 C 0.358 3.642 20 O -0.541 6.541 21 C -0.590 4.590 22 H 0.101 0.899 23 C -0.146 4.146 24 N -0.479 5.479 25 Si 0.846 3.154 26 H -0.219 1.219 27 H -0.213 1.213 28 H -0.227 1.227 29 C 0.001 3.999 30 C -0.081 4.081 31 C -0.147 4.147 32 H 0.137 0.863 33 H 0.107 0.893 34 H 0.136 0.864 35 H 0.191 0.809 36 H 0.187 0.813 37 H 0.173 0.827 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.237 0.763 41 H 0.072 0.928 42 H 0.130 0.870 43 H 0.041 0.959 44 H 0.133 0.867 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.103 0.897 48 H 0.083 0.917 49 H 0.097 0.903 50 H 0.042 0.958 51 H 0.118 0.882 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -35.263 -4.416 11.535 37.364 hybrid contribution 0.660 -0.824 -0.930 1.407 sum -34.604 -5.241 10.605 36.570 Atomic orbital electron populations 1.22282 0.89518 1.06541 1.06527 1.23301 0.93862 0.86624 0.68960 1.90557 1.73551 1.35971 1.38646 1.20519 0.92636 0.96510 1.05517 1.21805 1.02080 0.89986 0.97944 1.21438 0.92883 0.99803 0.96465 1.21869 0.96575 0.96952 1.04204 1.19075 0.82758 0.94490 0.97980 1.86143 1.16509 1.32984 1.88715 1.23690 0.92974 0.83718 1.04143 1.21923 0.89892 0.94081 0.89034 0.89206 1.86661 1.83630 1.50476 1.15719 1.22764 0.86823 0.96691 1.03320 1.61925 1.06478 1.05081 1.51733 1.22428 0.93070 0.92517 0.99293 1.21512 0.94432 0.88805 0.95681 1.47735 1.33411 1.11396 1.44180 1.18245 0.79008 0.87406 0.79582 1.90159 1.55655 1.36214 1.72041 1.21017 1.28313 0.95850 1.13858 0.89926 1.26267 0.92241 1.01647 0.94494 1.69562 1.26650 1.32415 1.19276 0.84569 0.78432 0.78715 0.73668 1.21901 1.21331 1.22706 1.21758 0.90626 0.86250 1.01302 1.22572 0.95565 0.96125 0.93811 1.20697 0.94185 0.96678 1.03170 0.86280 0.89338 0.86370 0.80888 0.81310 0.82719 0.89448 0.88755 0.76318 0.92834 0.86996 0.95860 0.86668 0.91370 0.91392 0.89750 0.91713 0.90345 0.95822 0.88159 0.87181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.97 9.75 71.23 0.69 -0.27 16 2 C 0.39 6.26 7.23 28.03 0.20 6.46 16 3 O -0.51 -13.24 17.09 -2.95 -0.05 -13.29 16 4 C -0.15 -2.32 5.87 -20.16 -0.12 -2.43 16 5 C -0.10 -0.73 9.36 22.59 0.21 -0.52 16 6 C -0.09 -0.57 10.02 22.21 0.22 -0.35 16 7 C -0.18 -1.90 9.04 22.44 0.20 -1.69 16 8 C 0.10 1.87 6.68 22.46 0.15 2.02 16 9 O -0.33 -6.80 10.10 -87.87 -0.89 -7.68 16 10 C 0.03 0.38 4.37 71.98 0.31 0.69 16 11 C 0.11 1.87 2.54 30.59 0.08 1.95 16 12 H 0.09 1.95 6.18 -2.39 -0.01 1.94 16 13 O -0.56 -11.21 12.98 -144.33 -1.87 -13.08 16 14 C 0.03 0.49 4.93 86.30 0.43 0.91 16 15 N -0.53 -12.80 4.64 -894.32 -4.15 -16.95 16 16 C 0.06 1.45 5.58 86.38 0.48 1.94 16 17 C 0.12 4.22 6.58 86.35 0.57 4.79 16 18 N -0.63 -27.92 3.00 -822.15 -2.47 -30.39 16 19 C 0.55 30.15 7.32 86.36 0.63 30.79 16 20 O -0.65 -38.31 11.82 -4.32 -0.05 -38.36 16 21 C -0.55 -32.24 9.35 24.83 0.23 -32.01 16 22 H 0.08 4.82 6.02 -2.91 -0.02 4.81 16 23 C 0.07 4.03 5.52 85.30 0.47 4.50 16 24 N -0.85 -48.91 13.92 21.83 0.30 -48.60 16 25 Si 1.01 53.55 25.88 68.60 1.78 55.32 16 26 H -0.29 -15.93 7.11 99.48 0.71 -15.22 16 27 H -0.29 -15.97 6.62 99.48 0.66 -15.31 16 28 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 29 C 0.12 4.69 6.54 86.50 0.57 5.26 16 30 C 0.05 1.44 5.06 86.54 0.44 1.88 16 31 C -0.13 -2.73 9.54 22.68 0.22 -2.51 16 32 H 0.12 0.18 8.14 -2.38 -0.02 0.16 16 33 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.12 -0.14 6.47 -2.39 -0.02 -0.15 16 35 H 0.17 -0.15 6.35 -2.91 -0.02 -0.17 16 36 H 0.17 -0.11 8.06 -2.91 -0.02 -0.13 16 37 H 0.16 0.85 6.27 -2.91 -0.02 0.84 16 38 H 0.09 0.81 7.64 -2.39 -0.02 0.79 16 39 H 0.09 0.67 7.67 -2.38 -0.02 0.65 16 40 H 0.39 4.70 9.05 -74.06 -0.67 4.03 16 41 H 0.05 0.78 8.08 -2.39 -0.02 0.76 16 42 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.12 2.17 8.11 -2.39 -0.02 2.15 16 45 H 0.07 2.68 7.09 -2.38 -0.02 2.66 16 46 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.29 15.35 8.29 -92.71 -0.77 14.58 16 48 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 49 H 0.08 3.31 5.41 -2.39 -0.01 3.30 16 50 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 51 H 0.10 2.79 5.58 -2.39 -0.01 2.78 16 52 H 0.11 2.89 7.65 -2.91 -0.02 2.87 16 Total: -1.00 -85.20 416.45 -1.17 -86.37 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 0.25 Total: 5.28 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: 5.99 Total: 21.39 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -6.32 Total: -95.95 kcal Atomic # 8 Polarization: -69.55 SS G_CDS: -2.86 Total: -72.41 kcal Atomic # 14 Polarization: 53.55 SS G_CDS: 1.78 Total: 55.32 kcal Total: -85.20 -1.17 -86.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408524704.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.962 kcal (2) G-P(sol) polarization free energy of solvation -85.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds