Wall clock time and date at job start Tue Mar 31 2020 05:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35900 * 117.00034 * 2 1 4 4 C 1.38756 * 120.05546 * 0.02562 * 3 2 1 5 5 C 1.38124 * 119.94245 * 179.72624 * 4 3 2 6 6 C 1.38288 * 120.05644 * 0.52868 * 5 4 3 7 7 S 1.76203 * 119.94378 * 179.72454 * 6 5 4 8 8 O 1.42096 * 106.40353 * 23.33267 * 7 6 5 9 9 O 1.42098 * 106.40003 * 156.25763 * 7 6 5 10 10 N 1.65609 * 107.21758 * 269.79555 * 7 6 5 11 11 C 1.38851 * 119.99623 * 295.33206 * 10 7 6 12 12 C 1.39568 * 119.84675 * 284.51661 * 11 10 7 13 13 C 1.36337 * 120.16037 * 179.72096 * 12 11 10 14 14 C 1.40879 * 119.84064 * 0.55858 * 13 12 11 15 15 C 1.41135 * 120.16084 * 179.69682 * 14 13 12 16 16 H 1.08005 * 119.99503 * 334.92079 * 15 14 13 17 17 C 1.39867 * 120.00245 * 154.91385 * 15 14 13 18 18 N 1.30902 * 120.00080 * 342.85802 * 17 15 14 19 19 Si 1.86793 * 119.99761 * 162.85494 * 17 15 14 20 20 H 1.48499 * 109.47698 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47242 * 120.00266 * 19 17 15 22 22 H 1.48501 * 109.47143 * 240.00316 * 19 17 15 23 23 C 1.40890 * 119.68668 * 359.71663 * 14 13 12 24 24 C 1.36342 * 119.83816 * 0.02562 * 23 14 13 25 25 C 1.38245 * 120.11155 * 359.45220 * 6 5 4 26 26 C 1.38167 * 120.05570 * 0.29768 * 25 6 5 27 27 C 1.50696 * 120.03143 * 179.97438 * 26 25 6 28 28 C 1.53004 * 109.46650 * 299.99837 * 27 26 25 29 29 C 1.53002 * 109.47220 * 59.99242 * 27 26 25 30 30 H 1.08999 * 109.46891 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46924 * 300.00243 * 1 2 3 32 32 H 1.08999 * 109.47089 * 59.99895 * 1 2 3 33 33 H 1.07993 * 120.02818 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.97048 * 180.27513 * 5 4 3 35 35 H 0.96992 * 119.99314 * 115.33283 * 10 7 6 36 36 H 1.08007 * 119.91184 * 359.97438 * 12 11 10 37 37 H 1.08000 * 120.07807 * 180.27219 * 13 12 11 38 38 H 0.97000 * 120.00107 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.08189 * 179.97438 * 23 14 13 40 40 H 1.08000 * 119.92073 * 179.97438 * 24 23 14 41 41 H 1.07997 * 119.97144 * 180.26687 * 25 6 5 42 42 H 1.08999 * 109.47422 * 179.97438 * 27 26 25 43 43 H 1.08999 * 109.47369 * 59.99770 * 28 27 26 44 44 H 1.08999 * 109.46841 * 179.97438 * 28 27 26 45 45 H 1.08999 * 109.47348 * 299.99267 * 28 27 26 46 46 H 1.09002 * 109.46642 * 60.00082 * 29 27 26 47 47 H 1.08999 * 109.47397 * 180.02562 * 29 27 26 48 48 H 1.08999 * 109.47247 * 300.00504 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6048 0.0063 6 6 3.3019 3.6758 0.0004 7 16 4.1018 5.2458 0.0004 8 8 3.1711 6.1704 0.5464 9 8 5.3982 5.0356 0.5431 10 7 4.3225 5.6835 -1.5815 11 6 5.1602 4.9357 -2.3983 12 6 6.5446 5.0484 -2.2624 13 6 7.3730 4.3129 -3.0572 14 6 6.8286 3.4465 -4.0254 15 6 7.6799 2.6868 -4.8560 16 1 8.6849 3.0282 -5.0557 17 6 7.2222 1.4917 -5.4205 18 7 6.1589 0.9032 -4.9341 19 14 8.1281 0.7357 -6.8686 20 1 9.2896 1.5891 -7.2262 21 1 8.6063 -0.6210 -6.4998 22 1 7.2090 0.6376 -8.0309 23 6 5.4301 3.3421 -4.1609 24 6 4.6136 4.0797 -3.3557 25 6 4.0560 2.5171 0.0002 26 6 3.4312 1.2848 -0.0003 27 6 4.2537 0.0221 -0.0010 28 6 5.1362 -0.0108 -1.2505 29 6 5.1368 -0.0121 1.2480 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.2129 2.3204 0.0014 34 1 1.3340 4.5113 0.0112 35 1 3.8666 6.4622 -1.9373 36 1 6.9606 5.7168 -1.5230 37 1 8.4441 4.3979 -2.9479 38 1 5.8413 0.0746 -5.3258 39 1 5.0058 2.6802 -4.9013 40 1 3.5414 4.0011 -3.4586 41 1 5.1344 2.5753 0.0000 42 1 3.5910 -0.8432 -0.0009 43 1 5.7989 0.8546 -1.2502 44 1 5.7315 -0.9239 -1.2508 45 1 4.5071 0.0135 -2.1403 46 1 4.5081 0.0115 2.1381 47 1 5.7321 -0.9251 1.2472 48 1 5.7995 0.8533 1.2482 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408678068.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:14 Heat of formation + Delta-G solvation = -78.932014 kcal Electronic energy + Delta-G solvation = -33288.761376 eV Core-core repulsion = 29014.210540 eV Total energy + Delta-G solvation = -4274.550836 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.134 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.40127 -38.01530 -37.65550 -36.71363 -35.38414 -35.19021 -34.77162 -32.83626 -30.35833 -29.90016 -29.60020 -28.75535 -27.44551 -26.74054 -24.76333 -23.44940 -22.61081 -21.15850 -20.80456 -20.18440 -18.84351 -18.13623 -17.48545 -17.27974 -16.97470 -16.66980 -16.14727 -15.89424 -15.37605 -14.64720 -14.55524 -14.34235 -14.05086 -13.77904 -13.71163 -13.37269 -13.31777 -13.11380 -12.84027 -12.40007 -12.33466 -12.19538 -12.11617 -11.84965 -11.72383 -11.69196 -11.60985 -11.49555 -11.36641 -11.33862 -11.23226 -10.86364 -10.84879 -10.80120 -10.75047 -10.44546 -10.26333 -9.92645 -9.79361 -9.29244 -8.92314 -8.82925 -8.35591 -7.66083 -7.38207 -6.92235 -4.48528 0.82398 1.13950 1.39890 2.58167 2.99780 3.03439 3.04302 3.07146 3.10315 3.41596 3.73314 3.81795 4.21360 4.45313 4.59317 4.69659 4.82101 4.95243 5.02195 5.18792 5.26106 5.29886 5.38934 5.49652 5.53744 5.63060 5.72815 5.92121 6.00336 6.04897 6.16007 6.19811 6.23262 6.27382 6.28932 6.33402 6.37710 6.44546 6.65020 6.77946 6.87573 6.90924 6.93864 7.07860 7.20529 7.26339 7.37410 7.50226 7.90704 7.96147 8.02329 8.15875 8.48917 8.73268 8.84009 9.99883 Molecular weight = 375.13amu Principal moments of inertia in cm(-1) A = 0.007978 B = 0.004208 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3508.740635 B = 6651.673983 C = 8772.449733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.175 3.825 4 C -0.231 4.231 5 C 0.010 3.990 6 C -0.696 4.696 7 S 2.678 3.322 8 O -0.985 6.985 9 O -0.957 6.957 10 N -1.031 6.031 11 C -0.036 4.036 12 C -0.061 4.061 13 C -0.224 4.224 14 C 0.121 3.879 15 C -0.447 4.447 16 H 0.081 0.919 17 C 0.076 3.924 18 N -0.776 5.776 19 Si 0.907 3.093 20 H -0.259 1.259 21 H -0.273 1.273 22 H -0.271 1.271 23 C -0.164 4.164 24 C -0.082 4.082 25 C 0.037 3.963 26 C -0.120 4.120 27 C -0.050 4.050 28 C -0.138 4.138 29 C -0.145 4.145 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.406 0.594 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.282 0.718 39 H 0.120 0.880 40 H 0.089 0.911 41 H 0.146 0.854 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.062 0.938 46 H 0.050 0.950 47 H 0.058 0.942 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.612 -2.865 6.240 11.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.222 6.222 3 C 0.129 3.871 4 C -0.251 4.251 5 C -0.009 4.009 6 C -0.783 4.783 7 S 2.772 3.228 8 O -0.975 6.975 9 O -0.947 6.947 10 N -0.785 5.785 11 C -0.132 4.132 12 C -0.082 4.082 13 C -0.245 4.245 14 C 0.118 3.882 15 C -0.476 4.476 16 H 0.099 0.901 17 C -0.144 4.144 18 N -0.400 5.400 19 Si 0.731 3.269 20 H -0.183 1.183 21 H -0.199 1.199 22 H -0.197 1.197 23 C -0.185 4.185 24 C -0.103 4.103 25 C 0.018 3.982 26 C -0.122 4.122 27 C -0.068 4.068 28 C -0.195 4.195 29 C -0.203 4.203 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.150 0.850 34 H 0.155 0.845 35 H 0.242 0.758 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.138 0.862 40 H 0.107 0.893 41 H 0.164 0.836 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.399 -2.934 7.098 12.138 hybrid contribution -0.654 -0.648 -1.174 1.492 sum -10.053 -3.582 5.924 12.206 Atomic orbital electron populations 1.23102 0.78393 1.04004 1.01526 1.86094 1.21366 1.26909 1.87835 1.19051 0.91973 0.84039 0.92050 1.21203 0.99941 0.92288 1.11652 1.20578 0.92379 0.97798 0.90175 1.30799 1.04671 1.21753 1.21107 1.02692 0.73618 0.73255 0.73253 1.93506 1.64876 1.61645 1.77454 1.93553 1.38319 1.85994 1.76812 1.52193 1.58723 1.38142 1.29437 1.16584 0.88235 1.05297 1.03094 1.20594 0.92239 0.97725 0.97670 1.20658 0.97751 1.05412 1.00674 1.17718 0.92372 0.89307 0.88819 1.19693 1.00206 1.03881 1.23802 0.90064 1.25947 0.94747 0.96816 0.96857 1.69854 1.20356 1.14839 1.34977 0.86266 0.80459 0.79196 0.80938 1.18287 1.19869 1.19655 1.20933 0.93401 1.02123 1.02009 1.20610 0.97624 0.95997 0.96081 1.20638 1.00289 0.89615 0.87697 1.19351 0.90187 0.96199 1.06455 1.20018 0.96215 0.94100 0.96504 1.21795 0.99361 1.02203 0.96149 1.21894 0.99380 1.02264 0.96732 0.88156 0.92558 0.92402 0.85016 0.84520 0.75778 0.88360 0.88475 0.90696 0.86236 0.89295 0.83595 0.90119 0.91652 0.92896 0.91915 0.93081 0.92305 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -4.03 9.26 -19.43 -0.18 -4.21 16 3 C 0.18 2.59 6.66 -39.21 -0.26 2.33 16 4 C -0.23 -3.13 9.04 -39.43 -0.36 -3.49 16 5 C 0.01 0.15 9.52 -39.60 -0.38 -0.23 16 6 C -0.70 -11.82 5.90 -39.56 -0.23 -12.06 16 7 S 2.68 47.79 5.71 -107.50 -0.61 47.17 16 8 O -0.98 -18.25 17.27 -57.17 -0.99 -19.24 16 9 O -0.96 -19.62 16.29 -57.17 -0.93 -20.55 16 10 N -1.03 -17.96 5.65 32.51 0.18 -17.78 16 11 C -0.04 -0.74 5.80 -83.69 -0.49 -1.22 16 12 C -0.06 -1.33 9.20 -39.77 -0.37 -1.70 16 13 C -0.22 -5.17 9.74 -39.27 -0.38 -5.56 16 14 C 0.12 2.95 5.57 -106.80 -0.59 2.36 16 15 C -0.45 -10.85 9.03 -37.87 -0.34 -11.19 16 16 H 0.08 1.91 7.90 -52.48 -0.41 1.50 16 17 C 0.08 1.74 5.14 -17.34 -0.09 1.65 16 18 N -0.78 -18.01 10.95 55.54 0.61 -17.40 16 19 Si 0.91 17.28 29.59 -169.99 -5.03 12.25 16 20 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 21 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 23 C -0.16 -3.87 8.63 -39.26 -0.34 -4.21 16 24 C -0.08 -1.75 9.90 -39.77 -0.39 -2.14 16 25 C 0.04 0.65 8.19 -39.60 -0.32 0.32 16 26 C -0.12 -1.96 4.79 -104.47 -0.50 -2.46 16 27 C -0.05 -0.75 3.06 -91.77 -0.28 -1.03 16 28 C -0.14 -2.33 9.01 37.16 0.33 -1.99 16 29 C -0.15 -1.96 9.01 37.16 0.33 -1.63 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 32 H 0.06 0.45 7.66 -51.93 -0.40 0.06 16 33 H 0.13 1.35 6.30 -52.49 -0.33 1.02 16 34 H 0.14 1.76 7.61 -52.49 -0.40 1.36 16 35 H 0.41 5.96 8.95 -34.47 -0.31 5.65 16 36 H 0.10 2.04 7.95 -52.48 -0.42 1.62 16 37 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 38 H 0.28 5.99 8.30 -40.82 -0.34 5.65 16 39 H 0.12 2.92 6.17 -52.49 -0.32 2.59 16 40 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.15 2.69 6.65 -52.49 -0.35 2.34 16 42 H 0.08 1.16 6.99 -51.93 -0.36 0.80 16 43 H 0.06 1.23 7.39 -51.93 -0.38 0.85 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.86 7.39 -51.93 -0.38 0.47 16 LS Contribution 407.79 15.07 6.15 6.15 Total: -1.00 -28.86 407.79 -11.03 -39.90 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -6.56 Total: 14.74 kcal Atomic # 6 Polarization: -37.37 SS G_CDS: -3.66 Total: -41.03 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.79 Total: -35.18 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -2.10 Total: -43.99 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Atomic # 16 Polarization: 47.79 SS G_CDS: -0.61 Total: 47.17 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -28.86 -11.03 -39.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408678068.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.034 kcal (2) G-P(sol) polarization free energy of solvation -28.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds