Wall clock time and date at job start Tue Mar 31 2020 05:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.38535 * 120.00370 * 5.94715 * 3 2 1 5 5 C 1.41184 * 120.00218 * 172.81390 * 4 3 2 6 6 C 1.38229 * 126.87069 * 314.16034 * 5 4 3 7 7 N 1.35586 * 109.43647 * 179.97438 * 6 5 4 8 8 C 1.36876 * 124.72494 * 179.97438 * 7 6 5 9 9 H 1.08005 * 120.00240 * 153.68082 * 8 7 6 10 10 C 1.39103 * 120.00437 * 333.67475 * 8 7 6 11 11 N 1.31265 * 119.99526 * 0.29867 * 10 8 7 12 12 Si 1.86796 * 120.00433 * 180.29731 * 10 8 7 13 13 H 1.48507 * 109.47163 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47224 * 119.99941 * 12 10 8 15 15 H 1.48503 * 109.47264 * 240.00148 * 12 10 8 16 16 C 1.38468 * 110.54461 * 359.97438 * 7 6 5 17 17 C 1.39023 * 132.90596 * 180.02562 * 16 7 6 18 18 C 1.37938 * 119.95570 * 179.29050 * 17 16 7 19 19 C 1.38621 * 120.59857 * 0.60550 * 18 17 16 20 20 C 1.37967 * 120.23928 * 359.61547 * 19 18 17 21 21 C 1.39068 * 119.69303 * 0.02562 * 20 19 18 22 22 C 1.46813 * 119.99760 * 185.94291 * 3 2 1 23 23 O 1.21710 * 119.99881 * 172.29754 * 22 3 2 24 24 N 1.34776 * 120.00271 * 352.30096 * 22 3 2 25 25 C 1.39963 * 120.00043 * 182.17862 * 24 22 3 26 26 C 1.38825 * 120.08142 * 334.87972 * 25 24 22 27 27 C 1.38136 * 119.95239 * 179.97438 * 26 25 24 28 28 C 1.38281 * 120.11600 * 359.97438 * 27 26 25 29 29 C 1.38271 * 120.16048 * 359.97438 * 28 27 26 30 30 C 1.38306 * 120.04778 * 359.97438 * 29 28 27 31 31 F 1.35093 * 120.06258 * 180.02562 * 30 29 28 32 32 H 1.07995 * 119.99517 * 352.81330 * 4 3 2 33 33 H 1.08002 * 125.28415 * 359.96358 * 6 5 4 34 34 H 0.96999 * 119.99717 * 185.00836 * 11 10 8 35 35 H 1.07996 * 120.01945 * 359.97438 * 17 16 7 36 36 H 1.07995 * 119.70195 * 180.20007 * 18 17 16 37 37 H 1.07998 * 119.88148 * 179.59940 * 19 18 17 38 38 H 1.07997 * 120.15258 * 180.02562 * 20 19 18 39 39 H 0.97000 * 119.99424 * 2.18510 * 24 22 3 40 40 H 1.07995 * 120.02593 * 0.24955 * 26 25 24 41 41 H 1.08003 * 119.94819 * 179.97438 * 27 26 25 42 42 H 1.08002 * 119.92568 * 179.97438 * 28 27 26 43 43 H 1.08001 * 119.98341 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2612 -1.1923 -0.1243 5 6 4.6647 -1.1806 -0.2769 6 6 5.4003 -0.3718 -1.1228 7 7 6.7189 -0.6552 -0.9844 8 6 7.7259 -0.0376 -1.6758 9 1 8.7179 0.0165 -1.2519 10 6 7.4719 0.5205 -2.9244 11 7 6.2651 0.4599 -3.4370 12 14 8.8481 1.3561 -3.8715 13 1 10.1036 1.2911 -3.0809 14 1 9.0448 0.6655 -5.1713 15 1 8.4901 2.7766 -4.1149 16 6 6.9049 -1.6565 -0.0463 17 6 8.0384 -2.2920 0.4477 18 6 7.9146 -3.2687 1.4138 19 6 6.6657 -3.6346 1.8913 20 6 5.5295 -3.0179 1.4092 21 6 5.6421 -2.0265 0.4405 22 6 3.3014 1.2656 0.1316 23 8 4.5102 1.2563 0.2727 24 7 2.6361 2.4372 0.0964 25 6 3.3399 3.6443 0.1761 26 6 4.5832 3.6855 0.7924 27 6 5.2758 4.8782 0.8690 28 6 4.7331 6.0314 0.3325 29 6 3.4957 5.9956 -0.2834 30 6 2.7969 4.8048 -0.3648 31 9 1.5880 4.7694 -0.9669 32 1 2.7280 -2.1312 -0.1044 33 1 4.9885 0.3706 -1.7905 34 1 6.1036 0.7837 -4.3370 35 1 9.0161 -2.0133 0.0833 36 1 8.7981 -3.7574 1.7970 37 1 6.5817 -4.4053 2.6431 38 1 4.5572 -3.3037 1.7825 39 1 1.6694 2.4437 0.0160 40 1 5.0106 2.7849 1.2076 41 1 6.2428 4.9103 1.3489 42 1 5.2771 6.9623 0.3945 43 1 3.0743 6.8980 -0.7011 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408806745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:19 Heat of formation + Delta-G solvation = 65.136323 kcal Electronic energy + Delta-G solvation = -33237.799716 eV Core-core repulsion = 28742.884647 eV Total energy + Delta-G solvation = -4494.915070 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.112 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -48.78387 -40.64522 -40.01952 -38.16749 -36.45911 -36.23589 -34.78290 -33.85410 -32.78696 -30.86698 -30.39465 -29.45900 -28.93018 -27.77000 -25.84212 -23.86962 -22.96099 -22.22258 -21.87825 -21.00532 -20.74803 -18.98973 -18.47400 -17.93695 -17.58235 -16.98839 -16.05788 -15.91711 -15.57691 -15.37177 -15.05147 -14.86831 -14.58739 -14.57053 -14.29562 -13.89570 -13.77064 -13.59105 -13.26448 -13.14963 -13.07176 -12.96539 -12.84523 -12.33260 -12.23041 -12.07197 -11.97592 -11.78909 -11.64470 -11.58047 -11.42186 -11.23701 -10.99451 -10.73105 -10.56475 -10.36982 -10.21678 -9.79249 -9.22310 -9.03454 -8.67062 -8.40188 -7.89616 -7.43811 -7.03746 -6.54719 -4.64621 0.96987 1.30299 1.40775 1.98210 2.45640 2.87046 2.90995 2.97116 3.01943 3.06006 3.28259 3.60402 3.73210 3.85871 4.13970 4.32424 4.45005 4.47216 4.61203 4.77706 4.82983 5.02384 5.21819 5.33415 5.50005 5.51235 5.61672 5.66430 5.71344 5.89137 6.03082 6.08335 6.15891 6.24279 6.31324 6.35742 6.48227 6.56103 6.64022 6.65569 6.78008 6.80864 6.86768 6.91452 7.14285 7.18568 7.28361 7.34421 7.63114 7.66542 7.77149 7.93168 8.19921 8.56157 8.62075 9.03550 9.99639 Molecular weight = 375.11amu Principal moments of inertia in cm(-1) A = 0.007023 B = 0.004156 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3986.161174 B = 6735.808034 C = 8876.308156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.272 3.728 3 C -0.253 4.253 4 C 0.179 3.821 5 C -0.302 4.302 6 C 0.212 3.788 7 N -0.265 5.265 8 C -0.335 4.335 9 H 0.112 0.888 10 C 0.045 3.955 11 N -0.842 5.842 12 Si 0.944 3.056 13 H -0.262 1.262 14 H -0.272 1.272 15 H -0.271 1.271 16 C 0.048 3.952 17 C -0.095 4.095 18 C -0.145 4.145 19 C -0.143 4.143 20 C -0.104 4.104 21 C -0.050 4.050 22 C 0.580 3.420 23 O -0.488 6.488 24 N -0.675 5.675 25 C 0.137 3.863 26 C -0.107 4.107 27 C -0.106 4.106 28 C -0.122 4.122 29 C -0.136 4.136 30 C 0.053 3.947 31 F -0.142 7.142 32 H 0.122 0.878 33 H 0.184 0.816 34 H 0.286 0.714 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.407 0.593 40 H 0.167 0.833 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.155 4.249 5.115 6.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.039 4.039 3 C -0.262 4.262 4 C 0.154 3.846 5 C -0.308 4.308 6 C 0.063 3.937 7 N 0.077 4.923 8 C -0.463 4.463 9 H 0.130 0.870 10 C -0.166 4.166 11 N -0.472 5.472 12 Si 0.768 3.232 13 H -0.185 1.185 14 H -0.197 1.197 15 H -0.196 1.196 16 C -0.056 4.056 17 C -0.115 4.115 18 C -0.164 4.164 19 C -0.162 4.162 20 C -0.123 4.123 21 C -0.054 4.054 22 C 0.371 3.629 23 O -0.363 6.363 24 N -0.318 5.318 25 C 0.040 3.960 26 C -0.127 4.127 27 C -0.125 4.125 28 C -0.141 4.141 29 C -0.155 4.155 30 C 0.031 3.969 31 F -0.121 7.121 32 H 0.140 0.860 33 H 0.201 0.799 34 H 0.097 0.903 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.242 0.758 40 H 0.184 0.816 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.559 4.397 4.859 6.577 hybrid contribution 0.169 0.457 -0.897 1.021 sum -0.391 4.854 3.961 6.278 Atomic orbital electron populations 1.81196 1.12063 1.07471 1.13671 1.25723 0.92521 0.93708 0.91989 1.17420 0.83617 0.94786 1.30422 1.20878 0.92202 0.94379 0.77134 1.17717 0.91263 1.09569 1.12221 1.22947 0.81818 0.93287 0.95641 1.40070 1.05998 1.21665 1.24605 1.20040 0.91890 1.33633 1.00723 0.86988 1.25597 0.98238 0.96029 0.96696 1.69702 1.20179 1.40437 1.16906 0.85575 0.79545 0.78999 0.79104 1.18543 1.19730 1.19612 1.18531 0.94994 0.94655 0.97419 1.20048 0.96131 0.97231 0.98045 1.20512 0.97024 0.99635 0.99224 1.20679 0.92504 1.01377 1.01635 1.20233 0.97815 0.96574 0.97679 1.18816 0.91972 0.96468 0.98179 1.17680 0.86983 0.82188 0.76007 1.90858 1.12606 1.85372 1.47506 1.43502 1.10678 1.04095 1.73558 1.17854 0.94695 0.84622 0.98816 1.21745 0.92944 1.00285 0.97763 1.21181 1.00006 0.91984 0.99355 1.20931 0.94972 0.98858 0.99315 1.20877 0.96051 0.96208 1.02358 1.17457 0.83701 0.94576 1.01131 1.91455 1.41974 1.97208 1.81491 0.86004 0.79932 0.90315 0.86985 0.87047 0.87228 0.87173 0.75806 0.81568 0.85223 0.85426 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -8.18 18.54 41.83 0.78 -7.41 16 2 C 0.27 4.50 14.20 -22.48 -0.32 4.18 16 3 C -0.25 -4.28 5.88 -104.40 -0.61 -4.90 16 4 C 0.18 3.04 9.71 -38.35 -0.37 2.67 16 5 C -0.30 -6.12 4.78 -104.85 -0.50 -6.62 16 6 C 0.21 4.83 6.72 -15.90 -0.11 4.72 16 7 N -0.26 -6.20 2.88 -59.09 -0.17 -6.37 16 8 C -0.34 -7.85 9.86 -14.98 -0.15 -7.99 16 9 H 0.11 2.49 7.83 -52.48 -0.41 2.08 16 10 C 0.04 1.01 5.44 -17.47 -0.10 0.92 16 11 N -0.84 -19.89 10.68 55.50 0.59 -19.29 16 12 Si 0.94 17.60 29.56 -169.99 -5.02 12.57 16 13 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 14 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 15 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 16 C 0.05 1.03 6.72 -83.80 -0.56 0.47 16 17 C -0.09 -1.80 9.92 -39.40 -0.39 -2.19 16 18 C -0.14 -2.37 10.02 -39.55 -0.40 -2.77 16 19 C -0.14 -2.28 10.04 -39.54 -0.40 -2.67 16 20 C -0.10 -1.81 10.09 -39.37 -0.40 -2.21 16 21 C -0.05 -1.02 6.33 -104.89 -0.66 -1.69 16 22 C 0.58 10.49 7.13 -12.79 -0.09 10.40 16 23 O -0.49 -10.02 9.05 5.18 0.05 -9.97 16 24 N -0.68 -11.09 5.26 -10.94 -0.06 -11.15 16 25 C 0.14 2.23 6.46 -83.62 -0.54 1.69 16 26 C -0.11 -1.72 8.79 -39.40 -0.35 -2.06 16 27 C -0.11 -1.42 10.04 -39.60 -0.40 -1.82 16 28 C -0.12 -1.44 10.04 -39.55 -0.40 -1.84 16 29 C -0.14 -1.72 10.02 -39.54 -0.40 -2.11 16 30 C 0.05 0.80 7.31 -39.25 -0.29 0.51 16 31 F -0.14 -2.19 16.82 2.25 0.04 -2.15 16 32 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 33 H 0.18 4.45 5.72 -52.49 -0.30 4.15 16 34 H 0.29 6.30 8.31 -40.82 -0.34 5.96 16 35 H 0.11 1.99 8.06 -52.49 -0.42 1.56 16 36 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 37 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 39 H 0.41 6.21 7.35 -40.82 -0.30 5.91 16 40 H 0.17 2.96 5.53 -52.49 -0.29 2.67 16 41 H 0.13 1.46 8.06 -52.48 -0.42 1.03 16 42 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 382.80 15.07 5.77 5.77 Total: -1.00 -26.13 382.80 -9.27 -35.40 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -3.82 Total: 15.91 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -7.42 Total: -13.32 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 1.14 Total: -44.22 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.05 Total: -9.97 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.02 Total: 12.57 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -26.13 -9.27 -35.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408806745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.539 kcal (2) G-P(sol) polarization free energy of solvation -26.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds