Wall clock time and date at job start Tue Mar 31 2020 05:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31399 * 1 3 3 Si 1.86796 * 119.99971 * 2 1 4 4 H 1.48496 * 109.47078 * 274.12154 * 3 2 1 5 5 H 1.48497 * 109.47344 * 34.12173 * 3 2 1 6 6 H 1.48504 * 109.47227 * 154.12096 * 3 2 1 7 7 C 1.38904 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00258 * 340.80033 * 7 2 1 9 9 N 1.37041 * 119.99576 * 160.79278 * 7 2 1 10 10 C 1.35974 * 124.83987 * 338.08513 * 9 7 2 11 11 C 1.36570 * 109.69241 * 180.02562 * 10 9 7 12 12 C 1.46464 * 126.74110 * 180.02562 * 11 10 9 13 13 N 1.30690 * 120.00351 * 179.97438 * 12 11 10 14 14 C 1.36738 * 120.00190 * 179.97438 * 13 12 11 15 15 C 1.39773 * 120.08006 * 314.72012 * 14 13 12 16 16 C 1.37779 * 119.91290 * 179.70384 * 15 14 13 17 17 C 1.39073 * 120.07958 * 0.59260 * 16 15 14 18 18 N 1.39629 * 119.90995 * 179.69947 * 17 16 15 19 19 C 1.47017 * 110.99908 * 123.61683 * 18 17 16 20 20 C 1.53095 * 109.26025 * 177.60561 * 19 18 17 21 21 O 1.43013 * 109.25554 * 56.85231 * 20 19 18 22 22 C 1.43012 * 113.73893 * 301.32617 * 21 20 19 23 23 C 1.47012 * 111.00140 * 359.97438 * 18 17 16 24 24 C 1.39061 * 120.17267 * 359.68548 * 17 16 15 25 25 C 1.37779 * 120.08592 * 0.02562 * 24 17 16 26 26 C 1.47663 * 106.52267 * 359.97438 * 11 10 9 27 27 C 1.39148 * 133.91580 * 179.97438 * 26 11 10 28 28 C 1.37913 * 119.68121 * 180.02562 * 27 26 11 29 29 C 1.38662 * 120.28243 * 0.02562 * 28 27 26 30 30 C 1.37924 * 120.59951 * 0.24531 * 29 28 27 31 31 C 1.38365 * 124.83463 * 158.10673 * 9 7 2 32 32 H 0.96997 * 119.99652 * 0.02562 * 1 2 3 33 33 H 1.08003 * 125.15138 * 0.04407 * 10 9 7 34 34 H 1.08001 * 119.99819 * 359.96969 * 12 11 10 35 35 H 1.08001 * 120.04475 * 359.97438 * 15 14 13 36 36 H 1.07999 * 119.95831 * 180.31940 * 16 15 14 37 37 H 1.09004 * 109.50641 * 297.55029 * 19 18 17 38 38 H 1.09004 * 109.50303 * 57.66652 * 19 18 17 39 39 H 1.09001 * 109.50520 * 296.91235 * 20 19 18 40 40 H 1.09001 * 109.54158 * 176.80640 * 20 19 18 41 41 H 1.09004 * 109.50828 * 298.74284 * 22 21 20 42 42 H 1.08999 * 109.54416 * 178.63093 * 22 21 20 43 43 H 1.08999 * 109.50273 * 302.32060 * 23 18 17 44 44 H 1.08991 * 109.51010 * 62.45291 * 23 18 17 45 45 H 1.08002 * 119.96083 * 180.02562 * 24 17 16 46 46 H 1.07996 * 120.04549 * 180.02562 * 25 24 17 47 47 H 1.07994 * 120.15660 * 359.97438 * 27 26 11 48 48 H 1.08003 * 119.85913 * 180.02562 * 28 27 26 49 49 H 1.07995 * 119.69913 * 180.02562 * 29 28 27 50 50 H 1.08006 * 120.03435 * 179.71801 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4083 2.0967 -1.3964 5 1 1.4917 2.6259 0.7853 6 1 3.5864 1.4166 0.6111 7 6 2.0085 -1.2030 0.0005 8 1 1.5135 -2.1121 0.3085 9 7 3.3217 -1.2361 -0.3899 10 6 3.9224 -0.3027 -1.1753 11 6 5.2314 -0.6394 -1.3710 12 6 6.2194 0.1042 -2.1559 13 7 7.4441 -0.3409 -2.2553 14 6 8.3664 0.3531 -2.9886 15 6 8.0298 0.8448 -4.2529 16 6 8.9598 1.5489 -4.9862 17 6 10.2358 1.7598 -4.4751 18 7 11.1775 2.4683 -5.2239 19 6 11.6892 3.6225 -4.4707 20 6 12.7592 4.3344 -5.3027 21 8 12.2009 4.7149 -6.5631 22 6 11.6935 3.6151 -7.3236 23 6 10.6127 2.8957 -6.5122 24 6 10.5763 1.2670 -3.2200 25 6 9.6499 0.5672 -2.4782 26 6 5.4554 -1.8997 -0.6348 27 6 6.5588 -2.7276 -0.4520 28 6 6.4377 -3.8673 0.3150 29 6 5.2235 -4.1894 0.9020 30 6 4.1210 -3.3801 0.7239 31 6 4.2251 -2.2245 -0.0414 32 1 -0.4849 0.8400 -0.0004 33 1 3.4378 0.5724 -1.5824 34 1 5.9357 1.0203 -2.6527 35 1 7.0406 0.6769 -4.6527 36 1 8.6988 1.9336 -5.9611 37 1 10.8715 4.3125 -4.2621 38 1 12.1256 3.2802 -3.5324 39 1 13.6010 3.6613 -5.4657 40 1 13.1014 5.2234 -4.7729 41 1 12.5042 2.9211 -7.5454 42 1 11.2644 3.9833 -8.2555 43 1 10.2636 2.0230 -7.0639 44 1 9.7778 3.5740 -6.3365 45 1 11.5681 1.4332 -2.8262 46 1 9.9148 0.1852 -1.5034 47 1 7.5051 -2.4792 -0.9093 48 1 7.2924 -4.5118 0.4591 49 1 5.1394 -5.0840 1.5011 50 1 3.1784 -3.6421 1.1816 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408931212.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:44 Heat of formation + Delta-G solvation = 83.437895 kcal Electronic energy + Delta-G solvation = -32235.264105 eV Core-core repulsion = 28000.436051 eV Total energy + Delta-G solvation = -4234.828054 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 375.169 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.68687 -40.58831 -38.89680 -36.72572 -36.47804 -34.63201 -33.40633 -32.04011 -31.56771 -30.67682 -29.47838 -29.21870 -28.32040 -26.69549 -25.08541 -24.87693 -23.29759 -22.17754 -21.90751 -21.47089 -20.73561 -20.26141 -18.85073 -17.95534 -17.74587 -16.61545 -16.47442 -16.12654 -15.76067 -15.64604 -15.61451 -15.24282 -15.05431 -14.87580 -14.39697 -14.25887 -14.12134 -13.93536 -13.59107 -13.47307 -13.12422 -12.93687 -12.82543 -12.61823 -12.53754 -12.17672 -12.06257 -11.98385 -11.77750 -11.49560 -11.32924 -11.20824 -11.08134 -10.95676 -10.79969 -10.69970 -10.29137 -10.23356 -10.14422 -9.68019 -9.35030 -9.07241 -8.89770 -8.64053 -7.59139 -7.51924 -7.14008 -6.86646 -4.57719 0.96627 1.44006 1.79030 2.25314 2.57663 2.78466 2.93439 3.01585 3.30405 3.47346 3.62406 3.69249 3.94769 4.06485 4.42996 4.51647 4.53988 4.63695 4.72513 4.77640 4.81079 4.87935 4.94387 5.00247 5.11255 5.20574 5.21105 5.34636 5.36702 5.40286 5.49806 5.51697 5.57018 5.64893 5.69405 5.75411 5.90923 6.01982 6.05262 6.13959 6.26113 6.36136 6.37015 6.58704 6.61684 6.64772 6.68682 6.76359 6.79928 6.86865 7.02686 7.16918 7.22276 7.36467 7.43000 7.59273 7.75006 7.95319 8.52642 8.54890 8.80061 9.92426 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.012074 B = 0.001971 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.523319 B =14203.229967 C =15898.359909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.071 3.929 3 Si 0.882 3.118 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.244 1.244 7 C -0.341 4.341 8 H 0.127 0.873 9 N -0.264 5.264 10 C 0.040 3.960 11 C -0.233 4.233 12 C 0.270 3.730 13 N -0.535 5.535 14 C 0.104 3.896 15 C -0.146 4.146 16 C -0.146 4.146 17 C 0.073 3.927 18 N -0.485 5.485 19 C 0.019 3.981 20 C 0.063 3.937 21 O -0.385 6.385 22 C 0.063 3.937 23 C 0.013 3.987 24 C -0.118 4.118 25 C -0.100 4.100 26 C -0.057 4.057 27 C -0.076 4.076 28 C -0.153 4.153 29 C -0.136 4.136 30 C -0.096 4.096 31 C 0.046 3.954 32 H 0.290 0.710 33 H 0.156 0.844 34 H 0.090 0.910 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.051 0.949 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.101 0.899 41 H 0.061 0.939 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.054 0.946 45 H 0.123 0.877 46 H 0.127 0.873 47 H 0.125 0.875 48 H 0.110 0.890 49 H 0.112 0.888 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.683 6.420 -8.425 20.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.143 4.143 3 Si 0.708 3.292 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.167 1.167 7 C -0.469 4.469 8 H 0.145 0.855 9 N 0.077 4.923 10 C -0.104 4.104 11 C -0.242 4.242 12 C 0.077 3.923 13 N -0.244 5.244 14 C 0.001 3.999 15 C -0.167 4.167 16 C -0.167 4.167 17 C -0.024 4.024 18 N -0.202 5.202 19 C -0.107 4.107 20 C -0.014 4.014 21 O -0.304 6.304 22 C -0.014 4.014 23 C -0.114 4.114 24 C -0.138 4.138 25 C -0.120 4.120 26 C -0.062 4.062 27 C -0.094 4.094 28 C -0.173 4.173 29 C -0.156 4.156 30 C -0.116 4.116 31 C -0.061 4.061 32 H 0.101 0.899 33 H 0.173 0.827 34 H 0.108 0.892 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.119 0.881 41 H 0.079 0.921 42 H 0.119 0.881 43 H 0.111 0.889 44 H 0.072 0.928 45 H 0.141 0.859 46 H 0.145 0.855 47 H 0.143 0.857 48 H 0.128 0.872 49 H 0.130 0.870 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 18.113 5.751 -8.227 20.708 hybrid contribution -0.932 1.610 -0.215 1.872 sum 17.181 7.360 -8.442 20.509 Atomic orbital electron populations 1.69688 1.06443 1.30063 1.38446 1.25376 0.95573 0.99581 0.93816 0.86730 0.81491 0.81536 0.79481 1.18954 1.20445 1.16700 1.19590 0.82494 0.98591 1.46258 0.85536 1.40202 1.07807 1.14835 1.29446 1.21693 0.93266 0.96745 0.98689 1.18129 0.92651 1.00035 1.13430 1.23312 0.88503 0.92402 0.88106 1.68612 1.02444 1.30141 1.23249 1.19026 0.94596 0.93302 0.92977 1.21622 0.99475 0.99677 0.95964 1.21073 0.92198 1.02550 1.00879 1.18776 0.89981 0.99920 0.93750 1.59428 1.34424 1.22252 1.04065 1.22945 0.98724 0.91267 0.97776 1.22713 0.94724 0.99771 0.84235 1.87996 1.78918 1.32584 1.30880 1.22713 0.95796 0.88822 0.94082 1.22954 0.97320 1.00322 0.90846 1.20564 0.99294 1.00389 0.93582 1.20865 0.91853 0.99250 1.00046 1.18739 0.92576 0.95104 0.99760 1.20507 0.97612 0.93365 0.97951 1.20765 0.97217 0.98171 1.01108 1.20564 0.92853 0.99667 1.02515 1.20014 0.98860 0.93116 0.99605 1.18360 0.89079 0.94687 1.03959 0.89903 0.82673 0.89249 0.86174 0.86039 0.93046 0.88950 0.92075 0.88102 0.92102 0.88099 0.88892 0.92779 0.85939 0.85463 0.85737 0.87235 0.86950 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.25 13.96 55.49 0.77 -19.47 16 2 C 0.07 1.70 5.44 -17.49 -0.10 1.60 16 3 Si 0.88 18.23 24.67 -169.99 -4.19 14.03 16 4 H -0.26 -5.06 6.68 56.52 0.38 -4.69 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.24 -5.20 6.72 56.52 0.38 -4.82 16 7 C -0.34 -8.39 10.30 -14.98 -0.15 -8.54 16 8 H 0.13 3.23 8.06 -52.49 -0.42 2.81 16 9 N -0.26 -6.14 2.73 -59.45 -0.16 -6.31 16 10 C 0.04 0.87 8.30 -16.32 -0.14 0.74 16 11 C -0.23 -4.84 6.26 -103.34 -0.65 -5.49 16 12 C 0.27 4.92 10.08 -14.73 -0.15 4.77 16 13 N -0.54 -9.70 9.17 -9.14 -0.08 -9.78 16 14 C 0.10 1.67 6.18 -84.53 -0.52 1.15 16 15 C -0.15 -2.10 9.17 -39.18 -0.36 -2.46 16 16 C -0.15 -1.83 8.80 -39.44 -0.35 -2.18 16 17 C 0.07 0.89 5.64 -83.69 -0.47 0.41 16 18 N -0.48 -5.00 4.77 -170.72 -0.81 -5.81 16 19 C 0.02 0.17 5.41 -3.71 -0.02 0.15 16 20 C 0.06 0.47 7.01 37.21 0.26 0.74 16 21 O -0.39 -3.63 10.83 -35.23 -0.38 -4.01 16 22 C 0.06 0.48 7.01 37.21 0.26 0.74 16 23 C 0.01 0.11 4.33 -3.71 -0.02 0.10 16 24 C -0.12 -1.46 9.18 -39.44 -0.36 -1.82 16 25 C -0.10 -1.43 9.99 -39.18 -0.39 -1.82 16 26 C -0.06 -1.23 6.25 -104.90 -0.66 -1.88 16 27 C -0.08 -1.47 9.81 -39.36 -0.39 -1.85 16 28 C -0.15 -2.66 10.03 -39.54 -0.40 -3.05 16 29 C -0.14 -2.36 10.02 -39.54 -0.40 -2.76 16 30 C -0.10 -1.91 9.93 -39.42 -0.39 -2.30 16 31 C 0.05 1.02 6.73 -83.82 -0.56 0.46 16 32 H 0.29 6.54 8.31 -40.82 -0.34 6.20 16 33 H 0.16 3.13 4.40 -52.48 -0.23 2.90 16 34 H 0.09 1.41 7.53 -52.49 -0.40 1.02 16 35 H 0.12 1.65 7.68 -52.49 -0.40 1.25 16 36 H 0.12 1.28 5.79 -52.49 -0.30 0.98 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.72 6.84 -51.93 -0.36 0.36 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.09 0.76 7.22 -51.93 -0.37 0.38 16 44 H 0.05 0.50 7.53 -51.93 -0.39 0.11 16 45 H 0.12 1.26 7.19 -52.49 -0.38 0.88 16 46 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 47 H 0.12 2.34 7.22 -52.49 -0.38 1.97 16 48 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 49 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 50 H 0.11 2.14 8.06 -52.48 -0.42 1.72 16 LS Contribution 403.19 15.07 6.08 6.08 Total: -1.00 -27.34 403.19 -11.34 -38.69 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -6.62 Total: 9.90 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -5.94 Total: -23.31 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: -0.29 Total: -41.37 kcal Atomic # 8 Polarization: -3.63 SS G_CDS: -0.38 Total: -4.01 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -4.19 Total: 14.03 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -27.34 -11.34 -38.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408931212.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.127 kcal (2) G-P(sol) polarization free energy of solvation -27.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds