Wall clock time and date at job start Tue Mar 31 2020 06:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39776 * 119.98120 * 91.42081 * 3 2 1 5 5 C 1.37610 * 120.06791 * 179.69903 * 4 3 2 6 6 C 1.39741 * 120.03215 * 0.54721 * 5 4 3 7 7 C 1.47689 * 120.01437 * 179.72356 * 6 5 4 8 8 O 1.21623 * 119.99610 * 179.72731 * 7 6 5 9 9 N 1.34769 * 120.00226 * 359.72305 * 7 6 5 10 10 N 1.40105 * 120.00075 * 180.02562 * 9 7 6 11 11 C 1.30087 * 120.00053 * 180.02562 * 10 9 7 12 12 C 1.46918 * 119.99972 * 180.02562 * 11 10 9 13 13 C 1.36287 * 126.70226 * 180.02562 * 12 11 10 14 14 N 1.36249 * 109.70366 * 180.02562 * 13 12 11 15 15 C 1.37061 * 124.87715 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99656 * 158.50306 * 15 14 13 17 17 C 1.38813 * 119.99849 * 338.51321 * 15 14 13 18 18 N 1.31445 * 120.00286 * 348.87980 * 17 15 14 19 19 Si 1.86797 * 119.99748 * 168.88459 * 17 15 14 20 20 H 1.48499 * 109.47499 * 89.99841 * 19 17 15 21 21 H 1.48500 * 109.47316 * 209.99662 * 19 17 15 22 22 H 1.48504 * 109.47105 * 329.99661 * 19 17 15 23 23 C 1.38340 * 110.24666 * 0.02562 * 14 13 12 24 24 C 1.38981 * 133.15017 * 179.97438 * 23 14 13 25 25 C 1.37936 * 119.93504 * 179.19303 * 24 23 14 26 26 C 1.38679 * 120.60161 * 0.69160 * 25 24 23 27 27 C 1.37902 * 120.28960 * 359.56374 * 26 25 24 28 28 C 1.39194 * 119.68505 * 359.97438 * 27 26 25 29 29 C 1.39897 * 119.96459 * 359.44804 * 6 5 4 30 30 F 1.35102 * 120.03794 * 180.29975 * 29 6 5 31 31 C 1.38069 * 119.92890 * 0.27673 * 29 6 5 32 32 H 1.08001 * 119.96649 * 359.96638 * 4 3 2 33 33 H 1.07998 * 119.97654 * 180.29408 * 5 4 3 34 34 H 0.96998 * 120.00009 * 0.02562 * 9 7 6 35 35 H 1.08006 * 119.99950 * 359.97438 * 11 10 9 36 36 H 1.08006 * 125.15446 * 359.97438 * 13 12 11 37 37 H 0.97007 * 120.00281 * 180.02562 * 18 17 15 38 38 H 1.08005 * 120.03367 * 359.97438 * 24 23 14 39 39 H 1.07994 * 119.69747 * 180.23643 * 25 24 23 40 40 H 1.07994 * 119.85116 * 179.54850 * 26 25 24 41 41 H 1.07997 * 120.15704 * 179.97438 * 27 26 25 42 42 H 1.07999 * 120.01500 * 179.97438 * 31 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2665 0.0310 -1.2104 5 6 4.6426 0.0379 -1.2123 6 6 5.3439 0.0030 -0.0041 7 6 6.8207 0.0043 -0.0068 8 8 7.4307 -0.0210 1.0451 9 7 7.4925 0.0335 -1.1748 10 7 8.8935 0.0341 -1.1774 11 6 9.5419 0.0628 -2.3048 12 6 11.0111 0.0629 -2.3075 13 6 11.8236 0.0912 -3.4013 14 7 13.1273 0.0804 -3.0055 15 6 14.2040 0.1017 -3.8533 16 1 15.1668 0.4349 -3.4952 17 6 14.0568 -0.3049 -5.1724 18 7 12.9552 -0.9122 -5.5540 19 14 15.4242 0.0109 -6.4051 20 1 16.3588 -1.1431 -6.4142 21 1 14.8397 0.1849 -7.7591 22 1 16.1613 1.2419 -6.0222 23 6 13.2082 0.0438 -1.6249 24 6 14.2760 0.0196 -0.7357 25 6 14.0398 0.0006 0.6232 26 6 12.7429 -0.0090 1.1143 27 6 11.6707 0.0094 0.2472 28 6 11.8952 0.0383 -1.1262 29 6 4.6462 -0.0272 1.2081 30 9 5.3227 -0.0548 2.3772 31 6 3.2655 -0.0284 1.2085 32 1 2.7256 0.0534 -2.1449 33 1 5.1807 0.0661 -2.1482 34 1 7.0059 0.0540 -2.0137 35 1 9.0001 0.0856 -3.2389 36 1 11.4854 0.1172 -4.4267 37 1 12.8525 -1.1966 -6.4757 38 1 15.2898 0.0284 -1.1079 39 1 14.8724 -0.0144 1.3108 40 1 12.5720 -0.0313 2.1804 41 1 10.6616 0.0015 0.6320 42 1 2.7255 -0.0521 2.1435 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408966478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:10 Heat of formation + Delta-G solvation = 84.490535 kcal Electronic energy + Delta-G solvation = -30933.759173 eV Core-core repulsion = 26374.257454 eV Total energy + Delta-G solvation = -4559.501719 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.108 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -49.19845 -40.33612 -40.22234 -38.81441 -36.85514 -36.22863 -36.02671 -33.57919 -32.82815 -31.75958 -31.27434 -30.15712 -28.77602 -27.95093 -25.93112 -25.05980 -23.44685 -22.42179 -21.66911 -21.03694 -20.48127 -19.80776 -19.25447 -17.87152 -17.77885 -17.15378 -16.62589 -16.23960 -16.11787 -15.67280 -15.47460 -14.93141 -14.79177 -14.75866 -14.61030 -14.43285 -14.35039 -14.05706 -13.82298 -13.67429 -13.19677 -13.17759 -12.96040 -12.72461 -12.54423 -12.39433 -12.06418 -12.01663 -11.88036 -11.58077 -11.41531 -11.17521 -10.79019 -10.74644 -10.49525 -10.11783 -9.99710 -9.77646 -9.58792 -9.36908 -9.36630 -9.05608 -8.17799 -7.27301 -7.05051 -6.60139 -4.51711 -0.28455 0.50606 1.77327 2.05395 2.05640 2.35348 2.63131 2.67864 2.90114 2.92697 2.96928 3.03768 3.08204 3.40150 3.65696 3.70690 4.05104 4.06911 4.21984 4.27042 4.49093 4.59051 4.67845 4.84324 4.98244 5.18615 5.28108 5.31298 5.37848 5.45522 5.50514 5.79378 5.90027 5.99856 6.02739 6.30985 6.36037 6.51563 6.72873 6.85400 6.86144 6.93229 6.98520 7.05688 7.27412 7.34890 7.45419 7.56642 7.81059 7.88969 7.98245 8.24155 8.72888 8.76621 9.14557 10.04886 Molecular weight = 376.11amu Principal moments of inertia in cm(-1) A = 0.013470 B = 0.001834 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.225205 B =15266.906540 C =17291.068555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C 0.252 3.748 3 C 0.023 3.977 4 C -0.088 4.088 5 C -0.060 4.060 6 C -0.132 4.132 7 C 0.565 3.435 8 O -0.490 6.490 9 N -0.577 5.577 10 N -0.288 5.288 11 C 0.198 3.802 12 C -0.246 4.246 13 C 0.134 3.866 14 N -0.273 5.273 15 C -0.338 4.338 16 H 0.110 0.890 17 C 0.044 3.956 18 N -0.847 5.847 19 Si 0.942 3.058 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.263 1.263 23 C 0.046 3.954 24 C -0.107 4.107 25 C -0.137 4.137 26 C -0.160 4.160 27 C -0.077 4.077 28 C -0.066 4.066 29 C 0.164 3.836 30 F -0.104 7.104 31 C -0.116 4.116 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.372 0.628 35 H 0.104 0.896 36 H 0.179 0.821 37 H 0.283 0.717 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.124 0.876 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.999 1.800 2.313 14.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.074 5.074 2 C -0.064 4.064 3 C 0.020 3.980 4 C -0.108 4.108 5 C -0.079 4.079 6 C -0.138 4.138 7 C 0.350 3.650 8 O -0.363 6.363 9 N -0.318 5.318 10 N -0.095 5.095 11 C -0.006 4.006 12 C -0.257 4.257 13 C -0.012 4.012 14 N 0.067 4.933 15 C -0.466 4.466 16 H 0.128 0.872 17 C -0.166 4.166 18 N -0.479 5.479 19 Si 0.766 3.234 20 H -0.195 1.195 21 H -0.199 1.199 22 H -0.187 1.187 23 C -0.061 4.061 24 C -0.127 4.127 25 C -0.157 4.157 26 C -0.179 4.179 27 C -0.095 4.095 28 C -0.072 4.072 29 C 0.143 3.857 30 F -0.081 7.081 31 C -0.137 4.137 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.210 0.790 35 H 0.121 0.879 36 H 0.196 0.804 37 H 0.094 0.906 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.142 0.858 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -15.151 1.659 3.717 15.688 hybrid contribution 0.639 -0.047 -1.900 2.005 sum -14.513 1.611 1.817 14.715 Atomic orbital electron populations 1.81312 1.11805 1.07585 1.06678 1.25452 0.92345 0.94340 0.94260 1.15767 0.84634 1.03618 0.93999 1.21157 0.93793 0.98624 0.97247 1.21200 0.93755 0.95871 0.97080 1.20374 0.94292 1.05808 0.93373 1.17459 0.85327 0.78515 0.83669 1.90881 1.68778 1.46305 1.30333 1.46746 1.04223 1.73107 1.07689 1.75498 0.86909 1.22561 1.24565 1.23593 0.93422 0.90968 0.92637 1.17879 0.88127 1.27687 0.92043 1.22196 0.82033 0.98547 0.98464 1.40066 1.05356 1.45286 1.02610 1.19915 0.90588 1.44897 0.91229 0.87189 1.25527 0.98825 0.93646 0.98567 1.69840 1.26541 1.32123 1.19387 0.85671 0.79507 0.79588 0.78638 1.19542 1.19947 1.18692 1.18478 0.95043 1.08555 0.84048 1.19914 0.96443 1.04343 0.91994 1.20518 0.96398 1.04880 0.93860 1.20701 0.92603 1.06216 0.98411 1.20570 0.98846 0.98863 0.91242 1.18793 0.91396 1.04405 0.92567 1.17325 0.88950 0.98124 0.81315 1.91670 1.79765 1.92492 1.44213 1.21102 0.91975 1.01715 0.98952 0.83420 0.83455 0.79039 0.87883 0.80426 0.90602 0.87353 0.87340 0.87500 0.85767 0.82819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -3.91 18.54 41.84 0.78 -3.14 16 2 C 0.25 1.84 15.32 -22.47 -0.34 1.49 16 3 C 0.02 0.14 5.73 -106.90 -0.61 -0.48 16 4 C -0.09 -0.39 9.73 -39.24 -0.38 -0.78 16 5 C -0.06 -0.35 9.52 -39.25 -0.37 -0.72 16 6 C -0.13 -1.29 5.88 -104.86 -0.62 -1.91 16 7 C 0.57 8.24 7.89 -12.40 -0.10 8.14 16 8 O -0.49 -9.48 15.66 5.26 0.08 -9.39 16 9 N -0.58 -8.00 6.21 30.50 0.19 -7.82 16 10 N -0.29 -5.25 9.82 32.08 0.31 -4.93 16 11 C 0.20 3.48 10.98 -14.78 -0.16 3.31 16 12 C -0.25 -5.25 6.27 -103.28 -0.65 -5.90 16 13 C 0.13 2.99 9.85 -16.29 -0.16 2.83 16 14 N -0.27 -6.52 2.89 -59.47 -0.17 -6.69 16 15 C -0.34 -8.00 9.89 -15.00 -0.15 -8.15 16 16 H 0.11 2.48 7.85 -52.49 -0.41 2.07 16 17 C 0.04 0.98 5.34 -17.50 -0.09 0.88 16 18 N -0.85 -19.45 10.86 55.49 0.60 -18.85 16 19 Si 0.94 17.20 29.56 -169.99 -5.03 12.18 16 20 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 21 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 22 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 23 C 0.05 1.06 6.73 -83.82 -0.56 0.50 16 24 C -0.11 -2.23 9.93 -39.42 -0.39 -2.62 16 25 C -0.14 -2.57 10.02 -39.53 -0.40 -2.96 16 26 C -0.16 -3.09 10.03 -39.54 -0.40 -3.49 16 27 C -0.08 -1.64 9.81 -39.35 -0.39 -2.03 16 28 C -0.07 -1.51 6.25 -104.90 -0.66 -2.16 16 29 C 0.16 1.57 7.27 -39.02 -0.28 1.29 16 30 F -0.10 -1.31 15.52 2.25 0.03 -1.28 16 31 C -0.12 -0.76 9.71 -39.15 -0.38 -1.14 16 32 H 0.15 0.30 8.06 -52.49 -0.42 -0.12 16 33 H 0.15 0.49 6.38 -52.49 -0.34 0.15 16 34 H 0.37 3.47 6.67 -182.60 -1.22 2.25 16 35 H 0.10 1.40 8.03 -52.48 -0.42 0.98 16 36 H 0.18 3.85 6.35 -52.48 -0.33 3.52 16 37 H 0.28 5.99 8.31 -40.82 -0.34 5.65 16 38 H 0.11 2.09 8.06 -52.48 -0.42 1.66 16 39 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 41 H 0.12 2.72 7.23 -52.49 -0.38 2.34 16 42 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 387.66 15.07 5.84 5.84 Total: -1.00 -31.16 387.66 -8.80 -39.96 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -4.35 Total: 8.00 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -7.09 Total: -13.88 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 1.71 Total: -41.43 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.03 Total: -1.28 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.18 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.16 -8.80 -39.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408966478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.451 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds