Wall clock time and date at job start Tue Mar 31 2020 06:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39776 * 119.98120 * 91.42081 * 3 2 1 5 5 C 1.37610 * 120.06791 * 179.69903 * 4 3 2 6 6 C 1.39741 * 120.03215 * 0.54721 * 5 4 3 7 7 C 1.47689 * 120.01437 * 179.72356 * 6 5 4 8 8 O 1.21623 * 119.99610 * 179.72731 * 7 6 5 9 9 N 1.34769 * 120.00226 * 359.72305 * 7 6 5 10 10 N 1.40105 * 120.00075 * 180.02562 * 9 7 6 11 11 C 1.30087 * 120.00053 * 180.02562 * 10 9 7 12 12 C 1.46918 * 119.99972 * 180.02562 * 11 10 9 13 13 C 1.36287 * 126.70226 * 180.02562 * 12 11 10 14 14 N 1.36249 * 109.70366 * 180.02562 * 13 12 11 15 15 C 1.37061 * 124.87715 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99656 * 158.50306 * 15 14 13 17 17 C 1.38813 * 119.99849 * 338.51321 * 15 14 13 18 18 N 1.31445 * 120.00286 * 348.87980 * 17 15 14 19 19 Si 1.86797 * 119.99748 * 168.88459 * 17 15 14 20 20 H 1.48499 * 109.47499 * 89.99841 * 19 17 15 21 21 H 1.48500 * 109.47316 * 209.99662 * 19 17 15 22 22 H 1.48504 * 109.47105 * 329.99661 * 19 17 15 23 23 C 1.38340 * 110.24666 * 0.02562 * 14 13 12 24 24 C 1.38981 * 133.15017 * 179.97438 * 23 14 13 25 25 C 1.37936 * 119.93504 * 179.19303 * 24 23 14 26 26 C 1.38679 * 120.60161 * 0.69160 * 25 24 23 27 27 C 1.37902 * 120.28960 * 359.56374 * 26 25 24 28 28 C 1.39194 * 119.68505 * 359.97438 * 27 26 25 29 29 C 1.39897 * 119.96459 * 359.44804 * 6 5 4 30 30 F 1.35102 * 120.03794 * 180.29975 * 29 6 5 31 31 C 1.38069 * 119.92890 * 0.27673 * 29 6 5 32 32 H 1.08001 * 119.96649 * 359.96638 * 4 3 2 33 33 H 1.07998 * 119.97654 * 180.29408 * 5 4 3 34 34 H 0.96998 * 120.00009 * 0.02562 * 9 7 6 35 35 H 1.08006 * 119.99950 * 359.97438 * 11 10 9 36 36 H 1.08006 * 125.15446 * 359.97438 * 13 12 11 37 37 H 0.97007 * 120.00281 * 180.02562 * 18 17 15 38 38 H 1.08005 * 120.03367 * 359.97438 * 24 23 14 39 39 H 1.07994 * 119.69747 * 180.23643 * 25 24 23 40 40 H 1.07994 * 119.85116 * 179.54850 * 26 25 24 41 41 H 1.07997 * 120.15704 * 179.97438 * 27 26 25 42 42 H 1.07999 * 120.01500 * 179.97438 * 31 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2665 0.0310 -1.2104 5 6 4.6426 0.0379 -1.2123 6 6 5.3439 0.0030 -0.0041 7 6 6.8207 0.0043 -0.0068 8 8 7.4307 -0.0210 1.0451 9 7 7.4925 0.0335 -1.1748 10 7 8.8935 0.0341 -1.1774 11 6 9.5419 0.0628 -2.3048 12 6 11.0111 0.0629 -2.3075 13 6 11.8236 0.0912 -3.4013 14 7 13.1273 0.0804 -3.0055 15 6 14.2040 0.1017 -3.8533 16 1 15.1668 0.4349 -3.4952 17 6 14.0568 -0.3049 -5.1724 18 7 12.9552 -0.9122 -5.5540 19 14 15.4242 0.0109 -6.4051 20 1 16.3588 -1.1431 -6.4142 21 1 14.8397 0.1849 -7.7591 22 1 16.1613 1.2419 -6.0222 23 6 13.2082 0.0438 -1.6249 24 6 14.2760 0.0196 -0.7357 25 6 14.0398 0.0006 0.6232 26 6 12.7429 -0.0090 1.1143 27 6 11.6707 0.0094 0.2472 28 6 11.8952 0.0383 -1.1262 29 6 4.6462 -0.0272 1.2081 30 9 5.3227 -0.0548 2.3772 31 6 3.2655 -0.0284 1.2085 32 1 2.7256 0.0534 -2.1449 33 1 5.1807 0.0661 -2.1482 34 1 7.0059 0.0540 -2.0137 35 1 9.0001 0.0856 -3.2389 36 1 11.4854 0.1172 -4.4267 37 1 12.8525 -1.1966 -6.4757 38 1 15.2898 0.0284 -1.1079 39 1 14.8724 -0.0144 1.3108 40 1 12.5720 -0.0313 2.1804 41 1 10.6616 0.0015 0.6320 42 1 2.7255 -0.0521 2.1435 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408966478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:09 Heat of formation + Delta-G solvation = 68.616523 kcal Electronic energy + Delta-G solvation = -30934.447521 eV Core-core repulsion = 26374.257454 eV Total energy + Delta-G solvation = -4560.190068 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.108 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -50.00931 -41.87319 -41.16388 -39.73940 -37.83262 -37.56678 -37.36337 -35.14400 -34.02925 -32.90359 -31.84730 -31.50147 -30.40247 -29.53944 -27.18810 -26.22272 -24.26956 -23.55057 -23.29746 -22.33528 -21.90723 -20.68638 -20.40852 -19.42772 -18.97298 -18.16112 -17.61173 -17.29554 -16.98841 -16.95219 -16.63009 -16.34151 -16.19867 -15.92949 -15.87766 -15.33727 -15.14476 -15.07490 -14.87044 -14.77194 -14.57343 -14.54667 -13.96072 -13.82708 -13.60480 -13.44406 -13.40029 -13.15886 -13.03451 -12.92253 -12.85125 -12.61055 -12.30661 -12.23150 -12.04173 -11.64689 -11.21469 -11.13257 -10.73272 -10.63037 -10.37326 -9.98802 -9.65050 -8.92796 -8.71222 -8.21686 -6.25181 -0.93448 -0.02063 0.30942 0.76492 1.08881 1.36177 1.42893 1.45807 1.52766 1.54696 1.57253 2.09019 2.15228 2.47515 2.48050 2.66084 2.95758 3.01291 3.08653 3.33291 3.36682 3.54695 3.80562 3.92678 3.94620 4.13838 4.24618 4.38242 4.40845 4.49737 4.62513 4.73089 4.82509 4.83255 4.87624 4.92957 4.99170 5.07600 5.24708 5.34292 5.36226 5.44978 5.45706 5.72431 5.82505 5.96470 6.17758 6.24819 6.28629 6.37810 6.54690 6.64265 7.05004 7.46321 7.57395 8.40143 Molecular weight = 376.11amu Principal moments of inertia in cm(-1) A = 0.013470 B = 0.001834 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.225205 B =15266.906540 C =17291.068555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.279 3.721 3 C 0.032 3.968 4 C -0.063 4.063 5 C -0.044 4.044 6 C -0.146 4.146 7 C 0.562 3.438 8 O -0.549 6.549 9 N -0.565 5.565 10 N -0.315 5.315 11 C 0.197 3.803 12 C -0.250 4.250 13 C 0.118 3.882 14 N -0.292 5.292 15 C -0.371 4.371 16 H 0.109 0.891 17 C 0.009 3.991 18 N -0.872 5.872 19 Si 1.009 2.991 20 H -0.270 1.270 21 H -0.266 1.266 22 H -0.260 1.260 23 C 0.016 3.984 24 C -0.123 4.123 25 C -0.125 4.125 26 C -0.158 4.158 27 C -0.091 4.091 28 C -0.095 4.095 29 C 0.138 3.862 30 F -0.131 7.131 31 C -0.103 4.103 32 H 0.186 0.814 33 H 0.178 0.822 34 H 0.399 0.601 35 H 0.146 0.854 36 H 0.180 0.820 37 H 0.289 0.711 38 H 0.118 0.882 39 H 0.148 0.852 40 H 0.136 0.864 41 H 0.113 0.887 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.460 1.952 1.045 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.036 4.036 3 C 0.029 3.971 4 C -0.083 4.083 5 C -0.062 4.062 6 C -0.153 4.153 7 C 0.350 3.650 8 O -0.425 6.425 9 N -0.308 5.308 10 N -0.122 5.122 11 C -0.009 4.009 12 C -0.261 4.261 13 C -0.026 4.026 14 N 0.047 4.953 15 C -0.498 4.498 16 H 0.127 0.873 17 C -0.197 4.197 18 N -0.504 5.504 19 Si 0.830 3.170 20 H -0.195 1.195 21 H -0.191 1.191 22 H -0.184 1.184 23 C -0.092 4.092 24 C -0.143 4.143 25 C -0.144 4.144 26 C -0.177 4.177 27 C -0.110 4.110 28 C -0.101 4.101 29 C 0.118 3.882 30 F -0.109 7.109 31 C -0.124 4.124 32 H 0.203 0.797 33 H 0.195 0.805 34 H 0.240 0.760 35 H 0.163 0.837 36 H 0.197 0.803 37 H 0.100 0.900 38 H 0.136 0.864 39 H 0.166 0.834 40 H 0.153 0.847 41 H 0.131 0.869 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -16.651 1.813 2.423 16.924 hybrid contribution 0.877 -0.106 -1.386 1.643 sum -15.774 1.707 1.037 15.900 Atomic orbital electron populations 1.81362 1.13087 1.09040 1.08027 1.25420 0.92172 0.93045 0.92975 1.15787 0.83816 1.03203 0.94322 1.21530 0.93100 0.95600 0.98094 1.21472 0.94278 0.94067 0.96432 1.20118 0.91222 1.08733 0.95197 1.18287 0.87234 0.76720 0.82762 1.90849 1.70451 1.48928 1.32312 1.46524 1.02632 1.72586 1.09074 1.75345 0.89822 1.21031 1.25985 1.23595 0.91981 0.91093 0.94202 1.18274 0.90078 1.26466 0.91256 1.22295 0.82068 0.99495 0.98775 1.40238 1.05790 1.46395 1.02901 1.20200 0.90931 1.46488 0.92210 0.87319 1.26386 1.01011 0.92816 0.99522 1.69900 1.27937 1.32529 1.20053 0.84692 0.76657 0.79276 0.76382 1.19473 1.19083 1.18420 1.18946 0.96117 1.09685 0.84404 1.20223 0.96464 1.04874 0.92772 1.20923 0.97368 1.02586 0.93567 1.21069 0.92315 1.04737 0.99620 1.20616 0.99070 1.00029 0.91256 1.19134 0.91900 1.05573 0.93472 1.17620 0.89972 1.00127 0.80508 1.91601 1.80520 1.93038 1.45722 1.21152 0.90575 1.00459 1.00199 0.79674 0.80482 0.75974 0.83737 0.80349 0.90040 0.86440 0.83449 0.84662 0.86901 0.81250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.70 18.54 19.00 0.35 -7.34 16 2 C 0.28 3.25 15.32 88.33 1.35 4.60 16 3 C 0.03 0.26 5.73 -21.34 -0.12 0.14 16 4 C -0.06 -0.27 9.73 22.49 0.22 -0.05 16 5 C -0.04 -0.34 9.52 22.48 0.21 -0.12 16 6 C -0.15 -2.66 5.88 -20.02 -0.12 -2.78 16 7 C 0.56 16.35 7.89 86.74 0.68 17.04 16 8 O -0.55 -22.17 15.66 -4.10 -0.06 -22.23 16 9 N -0.57 -15.08 6.21 -175.67 -1.09 -16.17 16 10 N -0.31 -11.51 9.82 -52.43 -0.51 -12.02 16 11 C 0.20 6.87 10.98 87.23 0.96 7.83 16 12 C -0.25 -10.99 6.27 -18.99 -0.12 -11.11 16 13 C 0.12 5.47 9.85 83.55 0.82 6.30 16 14 N -0.29 -14.51 2.89 -342.07 -0.99 -15.50 16 15 C -0.37 -18.12 9.89 84.01 0.83 -17.29 16 16 H 0.11 5.09 7.85 -2.91 -0.02 5.07 16 17 C 0.01 0.42 5.34 84.89 0.45 0.87 16 18 N -0.87 -40.62 10.86 21.64 0.23 -40.38 16 19 Si 1.01 35.18 29.56 68.60 2.03 37.21 16 20 H -0.27 -9.31 7.11 99.48 0.71 -8.60 16 21 H -0.27 -8.84 7.11 99.48 0.71 -8.13 16 22 H -0.26 -8.86 7.11 99.48 0.71 -8.16 16 23 C 0.02 0.76 6.73 38.83 0.26 1.02 16 24 C -0.12 -5.20 9.93 22.38 0.22 -4.98 16 25 C -0.13 -4.56 10.02 22.30 0.22 -4.34 16 26 C -0.16 -6.03 10.03 22.30 0.22 -5.81 16 27 C -0.09 -4.01 9.81 22.42 0.22 -3.79 16 28 C -0.10 -4.50 6.25 -20.05 -0.13 -4.62 16 29 C 0.14 2.58 7.27 22.63 0.16 2.75 16 30 F -0.13 -3.48 15.52 44.97 0.70 -2.78 16 31 C -0.10 -1.14 9.71 22.55 0.22 -0.92 16 32 H 0.19 -0.43 8.06 -2.91 -0.02 -0.46 16 33 H 0.18 0.27 6.38 -2.91 -0.02 0.25 16 34 H 0.40 6.34 6.67 -213.32 -1.42 4.92 16 35 H 0.15 3.65 8.03 -2.91 -0.02 3.62 16 36 H 0.18 8.01 6.35 -2.91 -0.02 7.99 16 37 H 0.29 12.26 8.31 -92.70 -0.77 11.49 16 38 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 39 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 40 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 41 H 0.11 5.16 7.23 -2.91 -0.02 5.14 16 42 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -74.04 387.66 6.94 -67.09 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: -0.29 Total: 27.39 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: 6.58 Total: -15.26 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -2.01 Total: -91.42 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.06 Total: -22.23 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.70 Total: -2.78 kcal Atomic # 14 Polarization: 35.18 SS G_CDS: 2.03 Total: 37.21 kcal Total: -74.04 6.94 -67.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408966478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.709 kcal (2) G-P(sol) polarization free energy of solvation -74.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds