Wall clock time and date at job start Tue Mar 31 2020 05:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.38529 * 119.99815 * 63.60982 * 3 2 1 5 5 C 1.41186 * 119.99746 * 171.12915 * 4 3 2 6 6 C 1.38234 * 126.87418 * 311.28067 * 5 4 3 7 7 N 1.35587 * 109.43930 * 180.14562 * 6 5 4 8 8 C 1.36874 * 124.72684 * 179.82861 * 7 6 5 9 9 H 1.08001 * 119.99836 * 144.80658 * 8 7 6 10 10 C 1.39104 * 119.99997 * 324.80224 * 8 7 6 11 11 N 1.31254 * 119.99796 * 171.45958 * 10 8 7 12 12 Si 1.86803 * 120.00028 * 351.45817 * 10 8 7 13 13 H 1.48496 * 109.47097 * 86.72602 * 12 10 8 14 14 H 1.48503 * 109.46850 * 206.72766 * 12 10 8 15 15 H 1.48502 * 109.46933 * 326.72487 * 12 10 8 16 16 C 1.38472 * 110.54071 * 359.55595 * 7 6 5 17 17 C 1.39021 * 132.90509 * 180.23755 * 16 7 6 18 18 C 1.37925 * 119.95949 * 179.97438 * 17 16 7 19 19 C 1.38620 * 120.59919 * 0.04144 * 18 17 16 20 20 C 1.37965 * 120.23945 * 359.97438 * 19 18 17 21 21 C 1.39068 * 119.69385 * 359.97438 * 20 19 18 22 22 C 1.46808 * 120.00029 * 243.61563 * 3 2 1 23 23 O 1.21701 * 119.99810 * 173.76845 * 22 3 2 24 24 N 1.34782 * 119.99628 * 353.75875 * 22 3 2 25 25 C 1.39951 * 119.99484 * 186.14566 * 24 22 3 26 26 C 1.38865 * 120.04814 * 32.78789 * 25 24 22 27 27 C 1.38118 * 119.94947 * 179.74165 * 26 25 24 28 28 C 1.38478 * 120.04800 * 0.51236 * 27 26 25 29 29 F 1.35095 * 119.95024 * 179.74382 * 28 27 26 30 30 C 1.38481 * 120.09093 * 359.76440 * 28 27 26 31 31 C 1.38106 * 120.04912 * 359.97438 * 30 28 27 32 32 H 1.07999 * 120.00465 * 351.13645 * 4 3 2 33 33 H 1.08004 * 125.28204 * 359.97308 * 6 5 4 34 34 H 0.97000 * 120.00060 * 180.02562 * 11 10 8 35 35 H 1.08000 * 120.01557 * 0.02562 * 17 16 7 36 36 H 1.08008 * 119.70202 * 179.97438 * 18 17 16 37 37 H 1.07997 * 119.87764 * 179.97438 * 19 18 17 38 38 H 1.08000 * 120.15173 * 179.97438 * 20 19 18 39 39 H 0.96991 * 120.00290 * 6.14701 * 24 22 3 40 40 H 1.08002 * 120.03023 * 0.02562 * 26 25 24 41 41 H 1.07997 * 119.97296 * 180.25690 * 27 26 25 42 42 H 1.08002 * 119.96873 * 179.97438 * 30 28 27 43 43 H 1.08001 * 120.02237 * 179.97438 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2609 -0.5323 -1.0747 5 6 4.6600 -0.3660 -1.1650 6 6 5.3667 0.8123 -1.0139 7 7 6.6907 0.5683 -1.1749 8 6 7.6740 1.5169 -1.0932 9 1 8.6364 1.2623 -0.6743 10 6 7.4338 2.8087 -1.5497 11 7 8.3100 3.7590 -1.3212 12 14 5.8645 3.1911 -2.4880 13 1 4.7813 3.5212 -1.5273 14 1 6.0962 4.3482 -3.3895 15 1 5.4684 2.0078 -3.2932 16 6 6.9098 -0.7755 -1.4274 17 6 8.0614 -1.5201 -1.6554 18 6 7.9702 -2.8774 -1.8832 19 6 6.7372 -3.5107 -1.8883 20 6 5.5837 -2.7876 -1.6643 21 6 5.6629 -1.4187 -1.4323 22 6 3.3018 0.5660 1.1390 23 8 4.5135 0.4654 1.1925 24 7 2.6335 1.1965 2.1251 25 6 3.3392 1.8466 3.1439 26 6 4.5630 2.4433 2.8706 27 6 5.2552 3.0890 3.8764 28 6 4.7348 3.1324 5.1589 29 9 5.4160 3.7600 6.1423 30 6 3.5172 2.5330 5.4348 31 6 2.8192 1.8910 4.4308 32 1 2.7308 -1.0749 -1.8435 33 1 4.9316 1.7781 -0.8032 34 1 8.1423 4.6599 -1.6393 35 1 9.0269 -1.0362 -1.6533 36 1 8.8676 -3.4518 -2.0603 37 1 6.6792 -4.5740 -2.0684 38 1 4.6238 -3.2824 -1.6690 39 1 1.6636 1.1997 2.1287 40 1 4.9711 2.4065 1.8713 41 1 6.2050 3.5567 3.6634 42 1 3.1134 2.5678 6.4358 43 1 1.8699 1.4234 4.6466 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409376340.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:23 Heat of formation + Delta-G solvation = 67.267401 kcal Electronic energy + Delta-G solvation = -33040.718024 eV Core-core repulsion = 28545.895365 eV Total energy + Delta-G solvation = -4494.822659 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.112 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -48.77234 -40.92601 -40.24267 -38.29133 -36.62855 -36.46776 -34.77443 -33.98024 -32.99629 -31.10104 -30.99815 -29.46177 -29.17638 -27.95375 -25.80720 -23.98140 -23.22955 -22.52505 -21.94715 -21.07637 -20.83904 -19.32427 -18.63185 -17.92806 -17.67785 -17.29181 -16.28456 -16.10968 -15.83444 -15.48859 -15.21710 -14.87955 -14.68663 -14.58301 -14.32480 -14.07374 -13.84565 -13.54093 -13.51931 -13.34224 -13.18412 -13.06989 -12.93273 -12.75344 -12.70132 -12.54183 -12.36793 -12.22570 -12.11848 -11.64626 -11.29644 -11.10664 -11.03699 -10.71183 -10.47404 -10.37635 -10.09188 -9.89243 -9.41123 -9.28160 -9.04108 -8.58362 -7.94783 -7.61147 -7.09407 -6.84036 -4.71333 0.68328 1.19177 1.27873 1.79627 2.29744 2.74671 2.77679 2.85557 2.89771 2.92928 3.15473 3.35112 3.61983 3.64574 3.92071 3.98773 4.24357 4.35011 4.41079 4.63756 4.74926 4.86976 4.99177 5.24972 5.28273 5.38850 5.47490 5.52587 5.56037 5.63960 5.81761 5.89066 5.94050 6.09035 6.12823 6.14404 6.27145 6.34093 6.37795 6.47182 6.52089 6.55458 6.64310 7.00517 7.01907 7.04343 7.13453 7.32704 7.43413 7.48309 7.65156 7.67442 7.92219 8.38561 8.47892 8.75799 9.97448 Molecular weight = 375.11amu Principal moments of inertia in cm(-1) A = 0.007175 B = 0.003880 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3901.718136 B = 7214.013823 C = 8570.253032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.269 3.731 3 C -0.234 4.234 4 C 0.169 3.831 5 C -0.268 4.268 6 C 0.116 3.884 7 N -0.261 5.261 8 C -0.347 4.347 9 H 0.127 0.873 10 C 0.076 3.924 11 N -0.825 5.825 12 Si 0.875 3.125 13 H -0.262 1.262 14 H -0.275 1.275 15 H -0.246 1.246 16 C 0.055 3.945 17 C -0.086 4.086 18 C -0.141 4.141 19 C -0.138 4.138 20 C -0.102 4.102 21 C -0.051 4.051 22 C 0.571 3.429 23 O -0.484 6.484 24 N -0.681 5.681 25 C 0.152 3.848 26 C -0.089 4.089 27 C -0.127 4.127 28 C 0.072 3.928 29 F -0.144 7.144 30 C -0.135 4.135 31 C -0.126 4.126 32 H 0.128 0.872 33 H 0.156 0.844 34 H 0.290 0.710 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.405 0.595 40 H 0.150 0.850 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.998 -4.063 4.125 9.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.043 4.043 3 C -0.243 4.243 4 C 0.144 3.856 5 C -0.274 4.274 6 C -0.030 4.030 7 N 0.080 4.920 8 C -0.474 4.474 9 H 0.144 0.856 10 C -0.138 4.138 11 N -0.453 5.453 12 Si 0.700 3.300 13 H -0.187 1.187 14 H -0.201 1.201 15 H -0.169 1.169 16 C -0.050 4.050 17 C -0.106 4.106 18 C -0.160 4.160 19 C -0.157 4.157 20 C -0.121 4.121 21 C -0.055 4.055 22 C 0.361 3.639 23 O -0.357 6.357 24 N -0.326 5.326 25 C 0.057 3.943 26 C -0.110 4.110 27 C -0.146 4.146 28 C 0.053 3.947 29 F -0.123 7.123 30 C -0.155 4.155 31 C -0.147 4.147 32 H 0.146 0.854 33 H 0.173 0.827 34 H 0.101 0.899 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.241 0.759 40 H 0.167 0.833 41 H 0.158 0.842 42 H 0.153 0.847 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.376 -3.679 4.118 9.214 hybrid contribution -0.572 0.627 -0.126 0.858 sum -7.948 -3.051 3.993 9.404 Atomic orbital electron populations 1.81229 1.11929 1.11831 1.08268 1.25683 0.92458 0.92626 0.93568 1.17660 0.83837 1.23455 0.99338 1.21017 0.92100 0.83376 0.89138 1.17441 0.91251 0.93007 1.25719 1.22105 0.83659 0.98475 0.98727 1.40113 1.04950 1.05437 1.41461 1.19571 0.96071 0.89176 1.42619 0.85566 1.25415 0.98303 0.94887 0.95167 1.69533 1.34585 1.02401 1.38822 0.86841 0.81736 0.80231 0.81206 1.18736 1.20100 1.16918 1.18441 0.95066 0.84577 1.06874 1.20139 0.96236 0.93260 1.00949 1.20586 0.97336 0.93509 1.04581 1.20734 0.92434 0.98844 1.03644 1.20236 0.97891 0.91875 1.02071 1.18727 0.91573 0.92715 1.02460 1.17715 0.87321 0.77458 0.81420 1.91012 1.12321 1.55563 1.76793 1.43586 1.10031 1.53960 1.25035 1.17743 0.93860 0.94952 0.87789 1.21168 0.93961 0.94862 1.00971 1.21123 1.01412 1.00978 0.91118 1.17676 0.92394 0.98893 0.85783 1.91473 1.79422 1.80357 1.61050 1.20828 0.94222 1.00176 1.00244 1.20693 1.01498 1.02041 0.90478 0.85402 0.82684 0.89897 0.86393 0.86695 0.86946 0.86951 0.75920 0.83268 0.84227 0.84731 0.85011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.89 18.54 41.84 0.78 -6.11 16 2 C 0.27 3.78 14.20 -22.47 -0.32 3.46 16 3 C -0.23 -3.43 5.87 -104.40 -0.61 -4.04 16 4 C 0.17 2.51 9.70 -38.36 -0.37 2.14 16 5 C -0.27 -4.95 4.62 -104.85 -0.48 -5.43 16 6 C 0.12 2.40 5.19 -15.89 -0.08 2.32 16 7 N -0.26 -5.83 2.60 -59.08 -0.15 -5.98 16 8 C -0.35 -8.33 10.27 -14.98 -0.15 -8.49 16 9 H 0.13 3.21 8.06 -52.49 -0.42 2.78 16 10 C 0.08 1.81 5.49 -17.48 -0.10 1.71 16 11 N -0.82 -20.27 13.95 55.50 0.77 -19.50 16 12 Si 0.88 18.07 24.82 -169.99 -4.22 13.85 16 13 H -0.26 -5.14 6.58 56.52 0.37 -4.77 16 14 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 15 H -0.25 -5.10 6.86 56.52 0.39 -4.72 16 16 C 0.05 1.14 6.72 -83.80 -0.56 0.58 16 17 C -0.09 -1.60 9.91 -39.41 -0.39 -1.99 16 18 C -0.14 -2.21 10.01 -39.56 -0.40 -2.60 16 19 C -0.14 -2.06 10.04 -39.54 -0.40 -2.45 16 20 C -0.10 -1.64 10.09 -39.37 -0.40 -2.04 16 21 C -0.05 -0.97 6.33 -104.89 -0.66 -1.64 16 22 C 0.57 9.18 7.10 -12.79 -0.09 9.09 16 23 O -0.48 -9.34 10.12 5.19 0.05 -9.29 16 24 N -0.68 -9.31 5.30 -10.99 -0.06 -9.37 16 25 C 0.15 2.13 6.29 -83.68 -0.53 1.61 16 26 C -0.09 -1.41 8.65 -39.39 -0.34 -1.75 16 27 C -0.13 -1.87 10.02 -39.54 -0.40 -2.27 16 28 C 0.07 0.99 7.30 -39.40 -0.29 0.70 16 29 F -0.14 -2.02 17.26 2.25 0.04 -1.98 16 30 C -0.14 -1.58 10.02 -39.54 -0.40 -1.98 16 31 C -0.13 -1.48 9.96 -39.39 -0.39 -1.87 16 32 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 33 H 0.16 3.19 4.91 -52.48 -0.26 2.93 16 34 H 0.29 6.56 8.31 -40.82 -0.34 6.22 16 35 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 36 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 37 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.41 4.66 7.70 -40.82 -0.31 4.34 16 40 H 0.15 2.69 6.40 -52.49 -0.34 2.35 16 41 H 0.14 1.97 8.06 -52.49 -0.42 1.54 16 42 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 43 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -26.38 380.76 -8.30 -34.68 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -3.89 Total: 12.90 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -7.36 Total: -14.94 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 1.34 Total: -40.96 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.05 Total: -9.29 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -4.22 Total: 13.85 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -26.38 -8.30 -34.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409376340.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.952 kcal (2) G-P(sol) polarization free energy of solvation -26.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds