Wall clock time and date at job start Tue Mar 31 2020 05:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.38529 * 119.99815 * 63.60982 * 3 2 1 5 5 C 1.41186 * 119.99746 * 171.12915 * 4 3 2 6 6 C 1.38234 * 126.87418 * 311.28067 * 5 4 3 7 7 N 1.35587 * 109.43930 * 180.14562 * 6 5 4 8 8 C 1.36874 * 124.72684 * 179.82861 * 7 6 5 9 9 H 1.08001 * 119.99836 * 144.80658 * 8 7 6 10 10 C 1.39104 * 119.99997 * 324.80224 * 8 7 6 11 11 N 1.31254 * 119.99796 * 171.45958 * 10 8 7 12 12 Si 1.86803 * 120.00028 * 351.45817 * 10 8 7 13 13 H 1.48496 * 109.47097 * 86.72602 * 12 10 8 14 14 H 1.48503 * 109.46850 * 206.72766 * 12 10 8 15 15 H 1.48502 * 109.46933 * 326.72487 * 12 10 8 16 16 C 1.38472 * 110.54071 * 359.55595 * 7 6 5 17 17 C 1.39021 * 132.90509 * 180.23755 * 16 7 6 18 18 C 1.37925 * 119.95949 * 179.97438 * 17 16 7 19 19 C 1.38620 * 120.59919 * 0.04144 * 18 17 16 20 20 C 1.37965 * 120.23945 * 359.97438 * 19 18 17 21 21 C 1.39068 * 119.69385 * 359.97438 * 20 19 18 22 22 C 1.46808 * 120.00029 * 243.61563 * 3 2 1 23 23 O 1.21701 * 119.99810 * 173.76845 * 22 3 2 24 24 N 1.34782 * 119.99628 * 353.75875 * 22 3 2 25 25 C 1.39951 * 119.99484 * 186.14566 * 24 22 3 26 26 C 1.38865 * 120.04814 * 32.78789 * 25 24 22 27 27 C 1.38118 * 119.94947 * 179.74165 * 26 25 24 28 28 C 1.38478 * 120.04800 * 0.51236 * 27 26 25 29 29 F 1.35095 * 119.95024 * 179.74382 * 28 27 26 30 30 C 1.38481 * 120.09093 * 359.76440 * 28 27 26 31 31 C 1.38106 * 120.04912 * 359.97438 * 30 28 27 32 32 H 1.07999 * 120.00465 * 351.13645 * 4 3 2 33 33 H 1.08004 * 125.28204 * 359.97308 * 6 5 4 34 34 H 0.97000 * 120.00060 * 180.02562 * 11 10 8 35 35 H 1.08000 * 120.01557 * 0.02562 * 17 16 7 36 36 H 1.08008 * 119.70202 * 179.97438 * 18 17 16 37 37 H 1.07997 * 119.87764 * 179.97438 * 19 18 17 38 38 H 1.08000 * 120.15173 * 179.97438 * 20 19 18 39 39 H 0.96991 * 120.00290 * 6.14701 * 24 22 3 40 40 H 1.08002 * 120.03023 * 0.02562 * 26 25 24 41 41 H 1.07997 * 119.97296 * 180.25690 * 27 26 25 42 42 H 1.08002 * 119.96873 * 179.97438 * 30 28 27 43 43 H 1.08001 * 120.02237 * 179.97438 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2609 -0.5323 -1.0747 5 6 4.6600 -0.3660 -1.1650 6 6 5.3667 0.8123 -1.0139 7 7 6.6907 0.5683 -1.1749 8 6 7.6740 1.5169 -1.0932 9 1 8.6364 1.2623 -0.6743 10 6 7.4338 2.8087 -1.5497 11 7 8.3100 3.7590 -1.3212 12 14 5.8645 3.1911 -2.4880 13 1 4.7813 3.5212 -1.5273 14 1 6.0962 4.3482 -3.3895 15 1 5.4684 2.0078 -3.2932 16 6 6.9098 -0.7755 -1.4274 17 6 8.0614 -1.5201 -1.6554 18 6 7.9702 -2.8774 -1.8832 19 6 6.7372 -3.5107 -1.8883 20 6 5.5837 -2.7876 -1.6643 21 6 5.6629 -1.4187 -1.4323 22 6 3.3018 0.5660 1.1390 23 8 4.5135 0.4654 1.1925 24 7 2.6335 1.1965 2.1251 25 6 3.3392 1.8466 3.1439 26 6 4.5630 2.4433 2.8706 27 6 5.2552 3.0890 3.8764 28 6 4.7348 3.1324 5.1589 29 9 5.4160 3.7600 6.1423 30 6 3.5172 2.5330 5.4348 31 6 2.8192 1.8910 4.4308 32 1 2.7308 -1.0749 -1.8435 33 1 4.9316 1.7781 -0.8032 34 1 8.1423 4.6599 -1.6393 35 1 9.0269 -1.0362 -1.6533 36 1 8.8676 -3.4518 -2.0603 37 1 6.6792 -4.5740 -2.0684 38 1 4.6238 -3.2824 -1.6690 39 1 1.6636 1.1997 2.1287 40 1 4.9711 2.4065 1.8713 41 1 6.2050 3.5567 3.6634 42 1 3.1134 2.5678 6.4358 43 1 1.8699 1.4234 4.6466 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409376340.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:21 Heat of formation + Delta-G solvation = 55.401730 kcal Electronic energy + Delta-G solvation = -33041.232558 eV Core-core repulsion = 28545.895365 eV Total energy + Delta-G solvation = -4495.337193 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.112 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -49.88360 -42.34128 -41.49066 -39.47381 -37.98874 -37.70295 -36.06764 -35.38494 -34.58186 -32.37997 -32.16462 -30.83628 -30.38260 -29.31550 -27.31039 -25.37740 -24.35294 -23.76161 -23.29518 -22.35115 -22.19111 -20.74505 -19.87338 -19.46316 -18.81492 -18.45054 -17.79954 -17.46179 -17.11552 -16.60427 -16.53559 -16.17442 -16.04779 -15.91468 -15.65982 -15.43999 -15.11519 -14.97951 -14.60795 -14.52694 -14.50763 -14.40860 -14.26195 -14.09030 -13.84347 -13.81188 -13.68155 -13.53227 -13.38413 -13.17206 -12.80118 -12.41192 -12.24849 -12.18538 -12.07075 -11.69653 -11.41768 -11.22452 -11.03089 -10.61846 -10.13491 -9.91011 -9.10296 -9.00495 -8.86311 -8.29405 -6.50561 -0.57094 0.07220 0.20737 0.46194 0.92341 1.08694 1.19559 1.26935 1.57720 1.63805 1.86415 1.92989 2.02414 2.48665 2.51619 2.69347 2.75375 2.98687 3.21683 3.27828 3.67792 3.83576 3.87925 3.88908 4.11155 4.20861 4.23459 4.30538 4.38072 4.46962 4.53902 4.59353 4.80128 4.81285 4.90703 4.98414 5.08791 5.11134 5.15874 5.20816 5.26364 5.28394 5.38960 5.44989 5.71122 5.74356 5.82970 5.90529 6.03927 6.13222 6.34955 6.37416 6.48446 6.81207 7.13129 7.15864 8.25912 Molecular weight = 375.11amu Principal moments of inertia in cm(-1) A = 0.007175 B = 0.003880 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3901.718136 B = 7214.013823 C = 8570.253032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.288 3.712 3 C -0.207 4.207 4 C 0.173 3.827 5 C -0.256 4.256 6 C 0.104 3.896 7 N -0.292 5.292 8 C -0.363 4.363 9 H 0.087 0.913 10 C 0.039 3.961 11 N -0.874 5.874 12 Si 0.925 3.075 13 H -0.250 1.250 14 H -0.269 1.269 15 H -0.246 1.246 16 C 0.025 3.975 17 C -0.124 4.124 18 C -0.124 4.124 19 C -0.134 4.134 20 C -0.096 4.096 21 C -0.072 4.072 22 C 0.564 3.436 23 O -0.519 6.519 24 N -0.667 5.667 25 C 0.140 3.860 26 C -0.111 4.111 27 C -0.143 4.143 28 C 0.065 3.935 29 F -0.147 7.147 30 C -0.121 4.121 31 C -0.109 4.109 32 H 0.175 0.825 33 H 0.147 0.853 34 H 0.293 0.707 35 H 0.103 0.897 36 H 0.145 0.855 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.419 0.581 40 H 0.116 0.884 41 H 0.129 0.871 42 H 0.171 0.829 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.731 -7.170 4.657 14.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.025 4.025 3 C -0.216 4.216 4 C 0.149 3.851 5 C -0.263 4.263 6 C -0.039 4.039 7 N 0.047 4.953 8 C -0.490 4.490 9 H 0.105 0.895 10 C -0.170 4.170 11 N -0.506 5.506 12 Si 0.747 3.253 13 H -0.175 1.175 14 H -0.195 1.195 15 H -0.170 1.170 16 C -0.080 4.080 17 C -0.144 4.144 18 C -0.143 4.143 19 C -0.153 4.153 20 C -0.114 4.114 21 C -0.076 4.076 22 C 0.354 3.646 23 O -0.395 6.395 24 N -0.313 5.313 25 C 0.045 3.955 26 C -0.132 4.132 27 C -0.163 4.163 28 C 0.045 3.955 29 F -0.126 7.126 30 C -0.140 4.140 31 C -0.129 4.129 32 H 0.192 0.808 33 H 0.164 0.836 34 H 0.103 0.897 35 H 0.121 0.879 36 H 0.163 0.837 37 H 0.173 0.827 38 H 0.167 0.833 39 H 0.257 0.743 40 H 0.134 0.866 41 H 0.147 0.853 42 H 0.189 0.811 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -12.158 -6.769 4.674 14.679 hybrid contribution 0.696 1.336 -0.105 1.510 sum -11.461 -5.433 4.569 13.482 Atomic orbital electron populations 1.81285 1.12019 1.11619 1.08480 1.25214 0.91709 0.92344 0.93238 1.17593 0.84143 1.21157 0.98695 1.21411 0.90512 0.83100 0.90105 1.17730 0.92754 0.92026 1.23829 1.22208 0.83481 0.99168 0.99002 1.39998 1.04917 1.05737 1.44674 1.19193 0.95684 0.90445 1.43697 0.89516 1.25996 1.00859 0.94496 0.95611 1.69613 1.36696 1.02877 1.41367 0.86086 0.79082 0.79865 0.80219 1.17507 1.19480 1.16982 1.18945 0.96890 0.84280 1.07866 1.20312 0.95391 0.94891 1.03798 1.21016 0.99416 0.92159 1.01747 1.21230 0.91337 1.00799 1.01924 1.20696 1.00059 0.90464 1.00183 1.19025 0.90600 0.94115 1.03879 1.18054 0.87036 0.77371 0.82155 1.91049 1.14012 1.56956 1.77469 1.43425 1.10579 1.52961 1.24380 1.17872 0.93410 0.95160 0.89046 1.20950 0.95526 0.96897 0.99811 1.21087 1.01449 1.01698 0.92055 1.17819 0.93291 0.99310 0.85055 1.91465 1.79721 1.80508 1.60910 1.21225 0.92743 0.98161 1.01893 1.21064 1.02387 1.00637 0.88818 0.80777 0.83614 0.89688 0.87920 0.83680 0.82692 0.83346 0.74321 0.86577 0.85264 0.81139 0.81127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.87 18.54 19.00 0.35 -11.52 16 2 C 0.29 6.87 14.20 88.33 1.25 8.13 16 3 C -0.21 -5.43 5.87 -19.72 -0.12 -5.55 16 4 C 0.17 4.57 9.70 23.06 0.22 4.79 16 5 C -0.26 -9.22 4.62 -20.01 -0.09 -9.32 16 6 C 0.10 4.46 5.19 84.11 0.44 4.90 16 7 N -0.29 -14.04 2.60 -340.84 -0.88 -14.92 16 8 C -0.36 -19.45 10.27 84.11 0.86 -18.58 16 9 H 0.09 5.10 8.06 -2.91 -0.02 5.07 16 10 C 0.04 2.03 5.49 84.99 0.47 2.50 16 11 N -0.87 -47.23 13.95 21.68 0.30 -46.93 16 12 Si 0.93 39.49 24.82 68.60 1.70 41.19 16 13 H -0.25 -9.98 6.58 99.48 0.65 -9.32 16 14 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 15 H -0.25 -10.37 6.86 99.48 0.68 -9.69 16 16 C 0.02 1.09 6.72 38.78 0.26 1.35 16 17 C -0.12 -4.85 9.91 22.38 0.22 -4.62 16 18 C -0.12 -3.72 10.01 22.29 0.22 -3.49 16 19 C -0.13 -3.51 10.04 22.30 0.22 -3.28 16 20 C -0.10 -2.75 10.09 22.40 0.23 -2.52 16 21 C -0.07 -2.69 6.33 -20.04 -0.13 -2.82 16 22 C 0.56 17.43 7.10 86.48 0.61 18.05 16 23 O -0.52 -20.52 10.12 -4.35 -0.04 -20.56 16 24 N -0.67 -16.93 5.30 -306.89 -1.62 -18.56 16 25 C 0.14 3.78 6.29 38.15 0.24 4.02 16 26 C -0.11 -3.71 8.65 22.39 0.19 -3.51 16 27 C -0.14 -4.49 10.02 22.30 0.22 -4.26 16 28 C 0.07 1.74 7.30 22.38 0.16 1.91 16 29 F -0.15 -4.06 17.26 44.97 0.78 -3.28 16 30 C -0.12 -2.47 10.02 22.30 0.22 -2.24 16 31 C -0.11 -2.17 9.96 22.39 0.22 -1.95 16 32 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 33 H 0.15 6.31 4.91 -2.91 -0.01 6.29 16 34 H 0.29 14.47 8.31 -92.71 -0.77 13.70 16 35 H 0.10 4.13 8.06 -2.91 -0.02 4.11 16 36 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 37 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 38 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 39 H 0.42 8.22 7.70 -92.71 -0.71 7.50 16 40 H 0.12 4.64 6.40 -2.91 -0.02 4.62 16 41 H 0.13 4.13 8.06 -2.91 -0.02 4.10 16 42 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 43 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -65.23 380.76 6.84 -58.39 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: 0.32 Total: 32.71 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 5.95 Total: -16.53 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -1.86 Total: -91.93 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.04 Total: -20.56 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.78 Total: -3.28 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 1.70 Total: 41.19 kcal Total: -65.23 6.84 -58.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409376340.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.790 kcal (2) G-P(sol) polarization free energy of solvation -65.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds