Wall clock time and date at job start Tue Mar 31 2020 06:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47104 * 2 1 4 4 C 1.30452 * 119.99919 * 115.00105 * 3 2 1 5 5 S 1.77197 * 126.65216 * 359.68638 * 4 3 2 6 6 C 1.77411 * 94.76971 * 180.26208 * 5 4 3 7 7 C 1.35742 * 127.71813 * 180.02562 * 6 5 4 8 8 C 1.46796 * 120.00186 * 352.60748 * 7 6 5 9 9 C 1.40112 * 120.08587 * 337.05299 * 8 7 6 10 10 C 1.37635 * 119.98692 * 180.02562 * 9 8 7 11 11 C 1.39059 * 120.17659 * 359.97438 * 10 9 8 12 12 O 1.35620 * 119.91948 * 180.02562 * 11 10 9 13 13 C 1.34770 * 116.99661 * 6.00204 * 12 11 10 14 14 H 1.07997 * 119.99942 * 354.90150 * 13 12 11 15 15 C 1.38663 * 120.00130 * 174.91147 * 13 12 11 16 16 N 1.31536 * 120.00226 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 119.99836 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47233 * 90.00218 * 17 15 13 19 19 H 1.48498 * 109.46836 * 210.00318 * 17 15 13 20 20 H 1.48500 * 109.47104 * 330.00070 * 17 15 13 21 21 C 1.39634 * 120.17088 * 0.03918 * 11 10 9 22 22 O 1.35953 * 119.99733 * 180.02562 * 21 11 10 23 23 C 1.42903 * 116.99606 * 180.02562 * 22 21 11 24 24 C 1.38063 * 120.00578 * 359.68087 * 21 11 10 25 25 C 1.46661 * 104.55771 * 359.97438 * 6 5 4 26 26 O 1.21705 * 122.34424 * 179.97438 * 25 6 5 27 27 N 1.32248 * 115.30910 * 0.02562 * 25 6 5 28 28 C 1.46499 * 120.66501 * 180.02562 * 27 25 6 29 29 C 1.53001 * 109.46853 * 269.97095 * 28 27 25 30 30 H 1.08997 * 109.46962 * 299.99972 * 1 2 3 31 31 H 1.09001 * 109.46622 * 59.99930 * 1 2 3 32 32 H 1.08998 * 109.47340 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47327 * 239.99645 * 2 1 3 34 34 H 1.08999 * 109.47023 * 119.99735 * 2 1 3 35 35 H 1.07998 * 119.99961 * 172.60518 * 7 6 5 36 36 H 1.07993 * 120.00231 * 359.97438 * 9 8 7 37 37 H 1.08001 * 119.90866 * 179.97438 * 10 9 8 38 38 H 0.97001 * 120.00165 * 180.02562 * 16 15 13 39 39 H 1.08997 * 109.47596 * 60.00146 * 23 22 21 40 40 H 1.09007 * 109.46461 * 180.02562 * 23 22 21 41 41 H 1.08999 * 109.47425 * 299.99764 * 23 22 21 42 42 H 1.07998 * 120.08800 * 180.31176 * 24 21 11 43 43 H 1.09004 * 109.47406 * 29.97594 * 28 27 25 44 44 H 1.09007 * 109.46789 * 149.97369 * 28 27 25 45 45 H 1.09011 * 109.46615 * 180.02562 * 29 28 27 46 46 H 1.08994 * 109.47174 * 300.00029 * 29 28 27 47 47 H 1.08999 * 109.46907 * 60.00571 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.6859 1.8370 1.0239 5 16 3.0934 0.9481 2.5016 6 6 3.9456 2.3064 3.2606 7 6 4.5497 2.3330 4.4759 8 6 4.4047 1.1957 5.3927 9 6 3.3127 0.3269 5.2669 10 6 3.1784 -0.7385 6.1279 11 6 4.1246 -0.9562 7.1234 12 8 3.9874 -2.0078 7.9687 13 6 2.9848 -2.8714 7.7131 14 1 2.2848 -2.6657 6.9168 15 6 2.8519 -4.0239 8.4726 16 7 1.8731 -4.8665 8.2235 17 14 4.0631 -4.3799 9.8496 18 1 3.5623 -3.7860 11.1151 19 1 4.2068 -5.8486 10.0148 20 1 5.3829 -3.7881 9.5132 21 6 5.2155 -0.0946 7.2553 22 8 6.1387 -0.3110 8.2295 23 6 7.2283 0.6103 8.3069 24 6 5.3604 0.9730 6.3919 25 6 3.8526 3.3937 2.2808 26 8 4.3381 4.4920 2.4789 27 7 3.2032 3.0975 1.1675 28 6 3.0409 4.0969 0.1087 29 6 1.7494 4.8831 0.3431 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.1371 3.1908 4.7684 36 1 2.5761 0.4937 4.4950 37 1 2.3359 -1.4071 6.0300 38 1 1.7799 -5.6726 8.7550 39 1 6.8434 1.6142 8.4860 40 1 7.8896 0.3230 9.1245 41 1 7.7835 0.5960 7.3689 42 1 6.2063 1.6373 6.4896 43 1 3.8899 4.7805 0.1211 44 1 2.9913 3.5967 -0.8585 45 1 1.6285 5.6264 -0.4450 46 1 0.9006 4.1995 0.3307 47 1 1.7991 5.3833 1.3103 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409380283.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:29 Heat of formation + Delta-G solvation = -16.425051 kcal Electronic energy + Delta-G solvation = -31346.939964 eV Core-core repulsion = 27009.673722 eV Total energy + Delta-G solvation = -4337.266242 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.129 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.04021 -40.00700 -38.00317 -37.54297 -36.80108 -35.43568 -33.54780 -32.68091 -31.88647 -30.48941 -29.94703 -28.92651 -26.94191 -25.88867 -24.77012 -24.65088 -22.84767 -21.96926 -21.69722 -20.81875 -19.09982 -18.66609 -18.17935 -17.83124 -17.05703 -16.39506 -16.20751 -15.74364 -15.56918 -15.46724 -15.27988 -14.80510 -14.54302 -14.43885 -14.09479 -13.99451 -13.95348 -13.53920 -13.47455 -13.25900 -13.00423 -12.53421 -12.49502 -12.40470 -12.23045 -12.10203 -12.01358 -11.76946 -11.51407 -11.40492 -11.33379 -11.24128 -11.10048 -10.99878 -10.95142 -10.42777 -10.23198 -10.19971 -9.73969 -9.33216 -9.14944 -9.08089 -8.33974 -7.87844 -7.08978 -6.70933 -4.28717 0.36193 1.07136 1.55543 1.75569 1.94424 2.26955 2.39608 2.98202 3.11437 3.13931 3.30896 3.67065 3.83351 4.05114 4.18544 4.41193 4.53007 4.80726 4.84227 4.92869 4.96111 5.05040 5.10847 5.14018 5.18726 5.28655 5.30088 5.34337 5.44051 5.46910 5.57895 5.60682 5.61695 5.65809 5.74363 5.79197 5.91996 5.95348 5.96831 6.01432 6.06580 6.24003 6.54982 6.67399 6.74664 6.95703 7.17471 7.35236 7.37441 7.59750 7.66128 7.86019 8.61213 9.21424 10.33821 Molecular weight = 376.13amu Principal moments of inertia in cm(-1) A = 0.010919 B = 0.002581 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.659851 B =10845.651602 C =13082.674488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 N -0.525 5.525 4 C 0.357 3.643 5 S -0.007 6.007 6 C -0.275 4.275 7 C 0.100 3.900 8 C -0.171 4.171 9 C -0.055 4.055 10 C -0.207 4.207 11 C 0.160 3.840 12 O -0.180 6.180 13 C -0.385 4.385 14 H 0.114 0.886 15 C 0.068 3.932 16 N -0.857 5.857 17 Si 0.905 3.095 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.252 1.252 21 C 0.054 3.946 22 O -0.307 6.307 23 C 0.029 3.971 24 C -0.128 4.128 25 C 0.567 3.433 26 O -0.505 6.505 27 N -0.539 5.539 28 C 0.108 3.892 29 C -0.164 4.164 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.145 0.855 36 H 0.129 0.871 37 H 0.147 0.853 38 H 0.286 0.714 39 H 0.050 0.950 40 H 0.093 0.907 41 H 0.050 0.950 42 H 0.129 0.871 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.077 12.533 -11.462 17.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.076 4.076 3 N -0.252 5.252 4 C -0.028 4.028 5 S 0.232 5.768 6 C -0.390 4.390 7 C 0.073 3.927 8 C -0.173 4.173 9 C -0.076 4.076 10 C -0.226 4.226 11 C 0.104 3.896 12 O -0.081 6.081 13 C -0.459 4.459 14 H 0.131 0.869 15 C -0.139 4.139 16 N -0.491 5.491 17 Si 0.729 3.271 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.175 1.175 21 C 0.010 3.990 22 O -0.222 6.222 23 C -0.067 4.067 24 C -0.148 4.148 25 C 0.357 3.643 26 O -0.381 6.381 27 N -0.266 5.266 28 C -0.015 4.015 29 C -0.222 4.222 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.163 0.837 36 H 0.146 0.854 37 H 0.164 0.836 38 H 0.096 0.904 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.068 0.932 42 H 0.147 0.853 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.725 11.671 -11.511 16.617 hybrid contribution 0.752 0.770 0.555 1.210 sum 3.476 12.441 -10.956 16.938 Atomic orbital electron populations 1.21765 0.93563 1.02314 1.02623 1.22099 0.96572 0.86746 1.02170 1.71619 1.16430 1.16578 1.20580 1.24931 0.94566 0.88194 0.95095 1.86111 1.65174 1.15557 1.09988 1.23261 1.17376 0.97254 1.01148 1.21747 0.87784 0.95580 0.87613 1.18119 0.99536 0.99183 1.00500 1.21193 0.96306 0.92669 0.97438 1.20918 1.02024 1.01257 0.98425 1.18645 0.91917 0.88645 0.90430 1.83581 1.48941 1.30751 1.44875 1.20974 1.05052 1.00164 1.19740 0.86904 1.24555 0.97073 0.93890 0.98351 1.69625 1.29308 1.11075 1.39118 0.86160 0.82239 0.77649 0.81045 1.19487 1.20467 1.17548 1.17996 0.90904 0.97012 0.93135 1.86189 1.34102 1.51645 1.50227 1.22956 0.88485 0.93102 1.02155 1.20819 1.00113 0.97788 0.96101 1.17514 0.77618 0.88374 0.80813 1.90843 1.46715 1.23309 1.77235 1.44735 1.51683 1.11150 1.19070 1.21701 0.99622 0.90300 0.89923 1.22058 0.97303 1.00284 1.02569 0.92499 0.91857 0.91310 0.89154 0.92785 0.83727 0.85377 0.83603 0.90399 0.93152 0.88858 0.93178 0.85344 0.89195 0.88695 0.90950 0.91918 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 10.24 37.16 0.38 -0.98 16 2 C 0.05 0.59 7.06 -4.04 -0.03 0.56 16 3 N -0.52 -6.57 10.02 -60.82 -0.61 -7.18 16 4 C 0.36 4.75 7.96 -88.59 -0.71 4.04 16 5 S -0.01 -0.10 17.26 -107.50 -1.86 -1.96 16 6 C -0.27 -3.94 6.31 -37.08 -0.23 -4.18 16 7 C 0.10 1.37 9.79 -37.02 -0.36 1.01 16 8 C -0.17 -2.68 5.78 -105.06 -0.61 -3.28 16 9 C -0.06 -0.94 8.55 -39.10 -0.33 -1.27 16 10 C -0.21 -4.06 9.14 -39.50 -0.36 -4.42 16 11 C 0.16 3.44 6.67 -38.76 -0.26 3.18 16 12 O -0.18 -4.45 8.35 -14.00 -0.12 -4.57 16 13 C -0.38 -9.99 9.94 30.89 0.31 -9.69 16 14 H 0.11 2.94 5.42 -52.49 -0.28 2.66 16 15 C 0.07 1.78 5.49 -17.52 -0.10 1.68 16 16 N -0.86 -22.91 13.96 55.48 0.77 -22.14 16 17 Si 0.90 20.36 28.62 -169.99 -4.86 15.50 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.25 -5.80 7.11 56.52 0.40 -5.39 16 21 C 0.05 1.02 6.70 -39.12 -0.26 0.76 16 22 O -0.31 -5.61 10.28 -34.21 -0.35 -5.96 16 23 C 0.03 0.35 9.81 101.05 0.99 1.34 16 24 C -0.13 -1.99 8.78 -38.97 -0.34 -2.33 16 25 C 0.57 8.31 7.61 -13.97 -0.11 8.20 16 26 O -0.51 -8.20 16.85 5.18 0.09 -8.11 16 27 N -0.54 -7.11 2.56 -118.06 -0.30 -7.41 16 28 C 0.11 1.16 6.05 -4.04 -0.02 1.13 16 29 C -0.16 -1.58 10.24 37.16 0.38 -1.20 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.62 6.33 -51.93 -0.33 0.29 16 35 H 0.15 1.67 8.06 -52.49 -0.42 1.24 16 36 H 0.13 2.03 4.79 -30.66 -0.15 1.88 16 37 H 0.15 2.95 5.62 -52.49 -0.29 2.65 16 38 H 0.29 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.05 0.52 7.67 -51.93 -0.40 0.12 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.53 7.64 -51.93 -0.40 0.13 16 42 H 0.13 1.56 6.28 -52.49 -0.33 1.23 16 43 H 0.09 0.94 7.53 -51.93 -0.39 0.55 16 44 H 0.09 0.94 7.72 -51.93 -0.40 0.54 16 45 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 405.86 15.07 6.12 6.12 Total: -1.00 -29.14 405.86 -8.70 -37.84 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.91 Total: 3.32 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -1.66 Total: -5.45 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.14 Total: -36.73 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.38 Total: -18.64 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.86 Total: 15.50 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -1.86 Total: -1.96 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -29.14 -8.70 -37.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409380283.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.412 kcal (2) G-P(sol) polarization free energy of solvation -29.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds