Wall clock time and date at job start Tue Mar 31 2020 05:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45203 * 109.46844 * 2 1 4 4 C 1.34233 * 116.99744 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00031 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00017 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.47288 * 59.99570 * 6 4 3 8 8 C 1.50702 * 109.47016 * 299.99552 * 6 4 3 9 9 N 1.31829 * 122.74290 * 300.99103 * 8 6 4 10 10 C 1.29120 * 117.08561 * 179.73414 * 9 8 6 11 11 Br 1.89100 * 124.92080 * 179.97438 * 10 9 8 12 12 S 1.70975 * 110.15618 * 359.97438 * 10 9 8 13 13 C 1.33588 * 122.74107 * 120.70019 * 8 6 4 14 14 C 1.50702 * 126.02804 * 0.26681 * 13 8 6 15 15 N 1.46503 * 109.46959 * 179.97438 * 6 4 3 16 16 C 1.36936 * 119.99922 * 245.14833 * 15 6 4 17 17 H 1.08000 * 120.00341 * 357.38269 * 16 15 6 18 18 C 1.38818 * 119.99787 * 177.38291 * 16 15 6 19 19 N 1.31614 * 120.00077 * 320.36970 * 18 16 15 20 20 Si 1.86806 * 119.99710 * 140.37169 * 18 16 15 21 21 H 1.48494 * 109.46821 * 94.99327 * 20 18 16 22 22 H 1.48502 * 109.46980 * 214.98969 * 20 18 16 23 23 H 1.48495 * 109.47074 * 334.99205 * 20 18 16 24 24 C 1.46500 * 120.00077 * 65.15260 * 15 6 4 25 25 C 1.53000 * 109.47476 * 97.59904 * 24 15 6 26 26 H 1.08995 * 109.47108 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46874 * 300.00029 * 1 2 3 28 28 H 1.09004 * 109.47465 * 59.99534 * 1 2 3 29 29 H 1.09005 * 109.47169 * 240.00427 * 2 1 3 30 30 H 1.08995 * 109.47194 * 120.00451 * 2 1 3 31 31 H 1.09000 * 109.47000 * 89.99814 * 14 13 8 32 32 H 1.08998 * 109.47457 * 210.00354 * 14 13 8 33 33 H 1.08999 * 109.46850 * 330.00225 * 14 13 8 34 34 H 0.96991 * 119.99968 * 180.02562 * 19 18 16 35 35 H 1.09001 * 109.47199 * 217.60393 * 24 15 6 36 36 H 1.09006 * 109.46722 * 337.59745 * 24 15 6 37 37 H 1.09001 * 109.46905 * 306.52745 * 25 24 15 38 38 H 1.08999 * 109.47179 * 66.52037 * 25 24 15 39 39 H 1.08995 * 109.47071 * 186.52668 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5851 3.4691 0.8904 8 6 3.4557 3.6738 -1.2299 9 7 3.7025 3.2469 -2.4525 10 6 3.2479 3.9610 -3.4275 11 35 3.4725 3.5575 -5.2612 12 16 2.4134 5.3242 -2.8203 13 6 2.7549 4.8096 -1.1702 14 6 2.3308 5.5244 0.0869 15 7 5.3837 2.8607 -0.0001 16 6 6.0936 3.3221 1.0761 17 1 5.5779 3.7811 1.9067 18 6 7.4762 3.2000 1.0996 19 7 8.0481 2.1062 0.6426 20 14 8.5250 4.5882 1.7798 21 1 8.8317 4.3225 3.2083 22 1 9.7916 4.6748 1.0094 23 1 7.7855 5.8705 1.6625 24 6 6.0872 2.2905 -1.1517 25 6 6.5672 3.4192 -2.0663 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.1027 6.2368 0.3778 32 1 1.3963 6.0553 -0.0947 33 1 2.1865 4.7981 0.8867 34 1 9.0141 2.0207 0.6594 35 1 6.9450 1.7144 -0.8046 36 1 5.4109 1.6380 -1.7039 37 1 5.7256 4.0638 -2.3201 38 1 7.3304 4.0036 -1.5525 39 1 6.9872 2.9943 -2.9779 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585116818.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:35 Heat of formation + Delta-G solvation = -1.660346 kcal Electronic energy + Delta-G solvation = -25476.400334 eV Core-core repulsion = 21787.080708 eV Total energy + Delta-G solvation = -3689.319626 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 376.024 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.35185 -39.19678 -36.41558 -35.25385 -33.35505 -31.64625 -31.33938 -31.14359 -29.81687 -27.76184 -25.58574 -23.89619 -23.79244 -22.80513 -21.13989 -20.23989 -18.74554 -18.24711 -16.95118 -16.55824 -16.05387 -15.71169 -15.21084 -14.86840 -14.59379 -13.93212 -13.79707 -13.32399 -13.20449 -13.02365 -12.98755 -12.70537 -12.59784 -12.28086 -11.96952 -11.55346 -11.53154 -11.41380 -11.11787 -11.10327 -10.93218 -10.74324 -10.62155 -10.54145 -10.16512 -10.03237 -9.92576 -9.74555 -9.49930 -9.21726 -9.02280 -8.56936 -8.41889 -7.11267 -5.88970 -3.18869 0.68425 0.83582 1.67775 1.70124 2.85313 3.09799 3.25007 3.34465 3.44087 3.50227 4.41530 4.63507 5.01342 5.10557 5.11575 5.13172 5.22779 5.36517 5.43333 5.53124 5.61676 5.77413 5.91648 5.92867 5.97669 6.04301 6.12296 6.22546 6.61019 6.74410 6.91068 7.09372 7.17275 7.43827 7.71963 7.77304 7.90095 8.35980 8.61470 9.02332 9.69136 10.11406 11.02901 Molecular weight = 376.02amu Principal moments of inertia in cm(-1) A = 0.008177 B = 0.005018 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3423.487068 B = 5578.941000 C = 7052.239889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 O -0.372 6.372 4 C 0.433 3.567 5 O -0.482 6.482 6 C 0.257 3.743 7 H 0.116 0.884 8 C 0.078 3.922 9 N -0.400 5.400 10 C 0.011 3.989 11 Br 0.039 6.961 12 S 0.157 5.843 13 C -0.190 4.190 14 C -0.077 4.077 15 N -0.535 5.535 16 C -0.284 4.284 17 H 0.082 0.918 18 C 0.021 3.979 19 N -0.852 5.852 20 Si 0.883 3.117 21 H -0.288 1.288 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.125 3.875 25 C -0.142 4.142 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.258 0.742 35 H 0.121 0.879 36 H 0.034 0.966 37 H 0.030 0.970 38 H 0.041 0.959 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.364 5.183 -8.155 18.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.017 4.017 3 O -0.289 6.289 4 C 0.270 3.730 5 O -0.365 6.365 6 C 0.139 3.861 7 H 0.133 0.867 8 C -0.057 4.057 9 N -0.115 5.115 10 C -0.345 4.345 11 Br 0.119 6.881 12 S 0.407 5.593 13 C -0.312 4.312 14 C -0.137 4.137 15 N -0.250 5.250 16 C -0.411 4.411 17 H 0.100 0.900 18 C -0.181 4.181 19 N -0.492 5.492 20 Si 0.711 3.289 21 H -0.215 1.215 22 H -0.213 1.213 23 H -0.202 1.202 24 C 0.000 4.000 25 C -0.201 4.201 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.138 0.862 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -15.013 4.946 -9.458 18.420 hybrid contribution 1.008 -0.041 1.168 1.544 sum -14.004 4.905 -8.290 16.997 Atomic orbital electron populations 1.21760 0.93485 1.02225 1.03023 1.22827 0.94613 0.82277 1.01936 1.86620 1.26562 1.30913 1.84814 1.26293 0.79494 0.95068 0.72194 1.90635 1.60069 1.42528 1.43288 1.18459 0.86774 0.88175 0.92658 0.86687 1.20479 0.97898 0.94971 0.92377 1.66097 1.16694 1.30447 0.98268 1.27798 1.08678 1.00138 0.97902 1.96759 1.96979 1.94923 0.99408 1.83662 1.51981 1.25077 0.98543 1.25854 1.06167 1.00350 0.98878 1.20342 1.01452 1.00157 0.91715 1.44362 0.96172 1.67315 1.17162 1.19149 0.89048 1.33394 0.99517 0.90024 1.24551 0.96798 0.96799 0.99935 1.70042 1.10211 1.22352 1.46618 0.86573 0.80044 0.84094 0.78173 1.21456 1.21314 1.20242 1.21581 0.98723 0.93906 0.85760 1.22032 0.99465 1.00527 0.98109 0.90961 0.91768 0.91915 0.92056 0.91885 0.89751 0.91011 0.89541 0.93159 0.86203 0.94724 0.95093 0.93971 0.95137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.29 37.16 0.38 -1.25 16 2 C 0.06 0.89 6.19 37.16 0.23 1.12 16 3 O -0.37 -6.82 10.14 -39.27 -0.40 -7.22 16 4 C 0.43 9.39 6.91 36.00 0.25 9.64 16 5 O -0.48 -12.21 14.85 -18.75 -0.28 -12.49 16 6 C 0.26 5.40 2.94 -70.23 -0.21 5.19 16 7 H 0.12 2.17 5.92 -51.93 -0.31 1.87 16 8 C 0.08 1.46 4.65 -84.22 -0.39 1.06 16 9 N -0.40 -7.71 6.93 -10.29 -0.07 -7.78 16 10 C 0.01 0.17 7.71 51.62 0.40 0.57 16 11 Br 0.04 0.53 34.13 -68.01 -2.32 -1.79 16 12 S 0.16 2.08 23.22 -107.50 -2.50 -0.41 16 13 C -0.19 -2.87 6.59 -35.94 -0.24 -3.11 16 14 C -0.08 -0.90 9.93 36.01 0.36 -0.54 16 15 N -0.54 -13.32 2.16 -168.30 -0.36 -13.68 16 16 C -0.28 -7.49 9.54 -15.06 -0.14 -7.63 16 17 H 0.08 2.04 7.88 -52.49 -0.41 1.63 16 18 C 0.02 0.57 4.37 -17.43 -0.08 0.49 16 19 N -0.85 -24.18 10.75 55.49 0.60 -23.59 16 20 Si 0.88 20.86 29.69 -169.99 -5.05 15.81 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.12 3.20 4.33 -4.04 -0.02 3.18 16 25 C -0.14 -3.35 9.67 37.16 0.36 -2.99 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 30 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.97 6.79 -51.93 -0.35 0.62 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.12 3.49 4.91 -51.93 -0.26 3.24 16 36 H 0.03 0.91 6.22 -51.93 -0.32 0.59 16 37 H 0.03 0.69 5.50 -51.93 -0.29 0.41 16 38 H 0.04 1.04 7.65 -51.93 -0.40 0.65 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 354.58 15.07 5.34 5.34 Total: -1.00 -31.50 354.58 -8.98 -40.48 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -4.85 Total: -0.41 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 0.90 Total: 5.73 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.16 Total: -45.05 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.68 Total: -19.70 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.05 Total: 15.81 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.50 Total: -0.41 kcal Atomic # 35 Polarization: 0.53 SS G_CDS: -2.32 Total: -1.79 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.50 -8.98 -40.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585116818.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.821 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds