Wall clock time and date at job start Tue Mar 31 2020 05:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47327 * 2 1 4 4 C 1.34227 * 117.00464 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99498 * 0.02562 * 4 3 2 6 6 C 1.50690 * 120.00325 * 179.72563 * 4 3 2 7 7 H 1.08997 * 109.47410 * 317.48556 * 6 4 3 8 8 C 1.50703 * 109.46938 * 77.48247 * 6 4 3 9 9 N 1.31836 * 122.74735 * 50.55659 * 8 6 4 10 10 C 1.29105 * 117.09189 * 179.74802 * 9 8 6 11 11 Br 1.89102 * 124.92400 * 180.19117 * 10 9 8 12 12 S 1.70979 * 110.15705 * 0.49835 * 10 9 8 13 13 C 1.33593 * 122.74502 * 230.84600 * 8 6 4 14 14 C 1.50706 * 126.02274 * 359.96388 * 13 8 6 15 15 N 1.46501 * 109.47566 * 197.48249 * 6 4 3 16 16 C 1.36932 * 119.99969 * 114.10123 * 15 6 4 17 17 H 1.07997 * 120.00322 * 349.58641 * 16 15 6 18 18 C 1.38820 * 119.99470 * 169.59143 * 16 15 6 19 19 N 1.31621 * 120.00404 * 7.07588 * 18 16 15 20 20 Si 1.86805 * 119.99614 * 187.07918 * 18 16 15 21 21 H 1.48494 * 109.47149 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.46789 * 119.99775 * 20 18 16 23 23 H 1.48494 * 109.46830 * 239.99747 * 20 18 16 24 24 C 1.46504 * 119.99688 * 294.10904 * 15 6 4 25 25 C 1.53002 * 109.47056 * 262.86237 * 24 15 6 26 26 H 1.09000 * 109.47118 * 59.99846 * 1 2 3 27 27 H 1.09006 * 109.47102 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47172 * 299.99759 * 1 2 3 29 29 H 1.08999 * 109.46697 * 240.00019 * 2 1 3 30 30 H 1.09005 * 109.47266 * 120.00626 * 2 1 3 31 31 H 1.09006 * 109.46602 * 90.00225 * 14 13 8 32 32 H 1.08996 * 109.46498 * 210.00069 * 14 13 8 33 33 H 1.09002 * 109.47154 * 330.00085 * 14 13 8 34 34 H 0.96990 * 119.99677 * 180.02562 * 19 18 16 35 35 H 1.09005 * 109.47604 * 22.85957 * 24 15 6 36 36 H 1.09000 * 109.47051 * 142.86495 * 24 15 6 37 37 H 1.08997 * 109.47304 * 67.65773 * 25 24 15 38 38 H 1.09001 * 109.47351 * 187.66810 * 25 24 15 39 39 H 1.09004 * 109.46800 * 307.66612 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 -0.0057 7 1 3.3604 3.5592 -0.7038 8 6 3.8267 3.5260 1.3784 9 7 4.2533 2.8928 2.4532 10 6 4.1237 3.5013 3.5844 11 35 4.6629 2.8034 5.2572 12 16 3.3860 5.0262 3.3520 13 6 3.2991 4.7298 1.6174 14 6 2.7305 5.6691 0.5851 15 7 5.3252 2.8831 -0.4189 16 6 5.7143 3.4580 -1.5992 17 1 4.9711 3.8013 -2.3035 18 6 7.0642 3.5993 -1.8904 19 7 7.9680 3.0583 -1.1012 20 14 7.5981 4.5576 -3.4025 21 1 6.3985 5.0609 -4.1186 22 1 8.4453 5.7046 -2.9880 23 1 8.3748 3.6684 -4.3032 24 6 6.3133 2.2137 0.4307 25 6 7.0344 3.2535 1.2908 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6674 5.4660 0.4554 32 1 2.8660 6.6985 0.9168 33 1 3.2469 5.5220 -0.3636 34 1 8.9112 3.1575 -1.3046 35 1 5.8096 1.4943 1.0765 36 1 7.0386 1.6942 -0.1956 37 1 6.3350 3.6769 2.0117 38 1 7.8592 2.7775 1.8212 39 1 7.4227 4.0470 0.6523 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585116819.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:39 Heat of formation + Delta-G solvation = 3.290634 kcal Electronic energy + Delta-G solvation = -25474.013745 eV Core-core repulsion = 21784.908810 eV Total energy + Delta-G solvation = -3689.104935 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 376.024 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.32381 -39.18307 -36.45243 -35.31983 -33.29048 -31.63009 -31.24353 -31.07897 -29.51997 -27.79693 -25.53112 -23.76990 -23.73465 -22.73219 -21.08507 -20.29905 -18.69319 -18.21728 -16.96964 -16.59476 -16.08638 -15.61383 -15.16587 -14.94588 -14.61267 -13.88471 -13.58218 -13.24019 -13.15102 -13.01614 -12.90828 -12.66326 -12.54497 -12.11707 -11.93167 -11.58187 -11.47131 -11.22575 -11.14635 -10.96007 -10.77480 -10.71470 -10.52920 -10.45483 -10.09536 -10.05915 -9.94327 -9.62777 -9.43060 -9.21688 -8.98897 -8.40435 -8.36690 -7.05558 -5.71881 -3.27349 0.74008 0.90318 1.74738 1.76491 2.89816 3.08576 3.23061 3.32670 3.39156 3.39531 4.37065 4.70424 5.09153 5.11531 5.13278 5.24252 5.27062 5.39133 5.47296 5.53037 5.67701 5.80775 5.90483 5.92133 6.04452 6.06394 6.14365 6.29824 6.88756 7.04161 7.16521 7.29611 7.39148 7.59385 7.83886 7.93660 8.16121 8.43653 8.59569 9.13313 9.66930 10.09142 11.13941 Molecular weight = 376.02amu Principal moments of inertia in cm(-1) A = 0.008341 B = 0.004854 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3355.958348 B = 5766.529399 C = 7250.910998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 O -0.371 6.371 4 C 0.440 3.560 5 O -0.486 6.486 6 C 0.260 3.740 7 H 0.112 0.888 8 C 0.076 3.924 9 N -0.402 5.402 10 C 0.013 3.987 11 Br 0.037 6.963 12 S 0.153 5.847 13 C -0.191 4.191 14 C -0.079 4.079 15 N -0.550 5.550 16 C -0.263 4.263 17 H 0.079 0.921 18 C 0.006 3.994 19 N -0.886 5.886 20 Si 0.914 3.086 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.289 1.289 24 C 0.167 3.833 25 C -0.125 4.125 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.252 0.748 35 H 0.028 0.972 36 H 0.102 0.898 37 H 0.002 0.998 38 H 0.019 0.981 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.001 2.770 9.911 16.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.016 4.016 3 O -0.288 6.288 4 C 0.277 3.723 5 O -0.370 6.370 6 C 0.142 3.858 7 H 0.130 0.870 8 C -0.059 4.059 9 N -0.117 5.117 10 C -0.343 4.343 11 Br 0.118 6.882 12 S 0.404 5.596 13 C -0.314 4.314 14 C -0.138 4.138 15 N -0.267 5.267 16 C -0.391 4.391 17 H 0.097 0.903 18 C -0.192 4.192 19 N -0.531 5.531 20 Si 0.744 3.256 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.216 1.216 24 C 0.043 3.957 25 C -0.184 4.184 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.120 0.880 37 H 0.021 0.979 38 H 0.038 0.962 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.337 2.421 11.151 16.805 hybrid contribution 0.579 -0.080 -1.693 1.791 sum -11.758 2.341 9.459 15.271 Atomic orbital electron populations 1.21766 0.93407 1.02277 1.03102 1.22834 0.94668 0.82067 1.01989 1.86581 1.26367 1.31042 1.84805 1.26015 0.79501 0.94867 0.71878 1.90585 1.60018 1.42858 1.43561 1.18228 0.89486 0.88925 0.89155 0.87040 1.20476 0.98476 0.92339 0.94656 1.66060 1.14456 1.34568 0.96572 1.27753 1.10645 0.98531 0.97359 1.96747 1.90341 1.86659 1.14448 1.83635 1.56242 1.17244 1.02528 1.25809 1.08207 1.00241 0.97170 1.20352 1.00806 0.96287 0.96345 1.44301 0.99351 1.61551 1.21467 1.19430 0.91708 1.33623 0.94380 0.90267 1.24921 0.95755 0.99798 0.98757 1.70326 1.00493 1.45142 1.37127 0.86032 0.78511 0.79409 0.81660 1.20230 1.21428 1.21560 1.21172 0.90127 0.92519 0.91860 1.22208 0.97032 1.01554 0.97600 0.91709 0.90912 0.91851 0.91825 0.91988 0.90228 0.91033 0.88981 0.93629 0.95380 0.88032 0.97945 0.96169 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.29 37.16 0.38 -1.23 16 2 C 0.06 0.89 6.19 37.16 0.23 1.12 16 3 O -0.37 -6.77 10.22 -39.25 -0.40 -7.17 16 4 C 0.44 9.47 6.93 36.00 0.25 9.72 16 5 O -0.49 -11.97 14.29 -18.75 -0.27 -12.24 16 6 C 0.26 5.48 2.86 -70.24 -0.20 5.28 16 7 H 0.11 2.11 6.16 -51.93 -0.32 1.79 16 8 C 0.08 1.47 4.60 -84.22 -0.39 1.08 16 9 N -0.40 -8.06 7.47 -10.29 -0.08 -8.13 16 10 C 0.01 0.22 7.62 51.62 0.39 0.62 16 11 Br 0.04 0.54 34.13 -68.01 -2.32 -1.78 16 12 S 0.15 2.16 23.22 -107.50 -2.50 -0.34 16 13 C -0.19 -3.05 6.59 -35.93 -0.24 -3.28 16 14 C -0.08 -0.97 9.84 36.01 0.35 -0.62 16 15 N -0.55 -13.70 2.28 -168.31 -0.38 -14.09 16 16 C -0.26 -6.81 9.73 -15.06 -0.15 -6.95 16 17 H 0.08 1.93 7.72 -52.49 -0.41 1.52 16 18 C 0.01 0.16 5.09 -17.43 -0.09 0.07 16 19 N -0.89 -24.45 7.47 55.49 0.41 -24.04 16 20 Si 0.91 20.82 29.56 -169.99 -5.02 15.79 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.17 4.37 4.21 -4.04 -0.02 4.36 16 25 C -0.13 -3.15 8.99 37.16 0.33 -2.82 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.97 8.13 -51.93 -0.42 0.54 16 30 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 1.24 6.98 -51.93 -0.36 0.88 16 34 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 35 H 0.03 0.76 5.81 -51.93 -0.30 0.46 16 36 H 0.10 3.00 5.84 -51.93 -0.30 2.70 16 37 H 0.00 0.04 5.60 -51.93 -0.29 -0.25 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 1.95 6.15 -51.93 -0.32 1.63 16 LS Contribution 350.58 15.07 5.28 5.28 Total: -1.00 -30.64 350.58 -9.23 -39.87 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -4.82 Total: -0.50 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 0.87 Total: 7.34 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -0.05 Total: -46.26 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.67 Total: -19.40 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.50 Total: -0.34 kcal Atomic # 35 Polarization: 0.54 SS G_CDS: -2.32 Total: -1.78 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.64 -9.23 -39.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585116819.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.160 kcal (2) G-P(sol) polarization free energy of solvation -30.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds