Wall clock time and date at job start Tue Mar 31 2020 06:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33366 * 122.55097 * 2 1 4 4 S 1.75855 * 109.72060 * 179.90761 * 3 2 1 5 5 C 1.75872 * 91.04766 * 0.30291 * 4 3 2 6 6 Cl 1.73599 * 125.20243 * 179.84938 * 5 4 3 7 7 C 1.33868 * 109.59329 * 359.83097 * 5 4 3 8 8 N 1.40915 * 122.63009 * 179.97438 * 7 5 4 9 9 C 1.34780 * 120.00132 * 310.66995 * 8 7 5 10 10 O 1.21604 * 120.00075 * 5.79174 * 9 8 7 11 11 N 1.34771 * 119.99981 * 185.79339 * 9 8 7 12 12 C 1.47240 * 121.34815 * 184.69083 * 11 9 8 13 13 C 1.53282 * 107.60160 * 116.01680 * 12 11 9 14 14 C 1.50564 * 110.85374 * 47.54124 * 13 12 11 15 15 C 1.41413 * 117.63153 * 160.29636 * 14 13 12 16 16 C 1.41400 * 119.97097 * 358.28048 * 15 14 13 17 17 H 1.08010 * 119.99439 * 29.71080 * 16 15 14 18 18 C 1.39946 * 120.00459 * 209.71296 * 16 15 14 19 19 N 1.30827 * 119.99564 * 10.35062 * 18 16 15 20 20 Si 1.86791 * 119.99952 * 190.35341 * 18 16 15 21 21 H 1.48500 * 109.47400 * 59.99836 * 20 18 16 22 22 H 1.48499 * 109.47012 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47326 * 299.99728 * 20 18 16 24 24 C 1.40413 * 120.06783 * 178.31474 * 15 14 13 25 25 C 1.37648 * 119.53473 * 0.41643 * 24 15 14 26 26 C 1.38331 * 119.99203 * 0.16138 * 25 24 15 27 27 C 1.37044 * 123.00026 * 339.60585 * 14 13 12 28 28 C 1.46669 * 121.34656 * 4.97383 * 11 9 8 29 29 H 1.09004 * 109.46620 * 269.70691 * 1 2 3 30 30 H 1.09000 * 109.47239 * 149.70943 * 1 2 3 31 31 H 1.08997 * 109.47076 * 29.70601 * 1 2 3 32 32 H 1.08000 * 125.13888 * 0.03053 * 3 2 1 33 33 H 0.97001 * 119.99973 * 130.66475 * 8 7 5 34 34 H 1.09004 * 109.78131 * 235.60856 * 12 11 9 35 35 H 1.09001 * 109.77969 * 356.42421 * 12 11 9 36 36 H 1.09005 * 109.29751 * 287.12715 * 13 12 11 37 37 H 1.09003 * 109.08183 * 167.81514 * 13 12 11 38 38 H 0.96999 * 119.99495 * 179.97438 * 19 18 16 39 39 H 1.07996 * 120.23520 * 180.43248 * 24 15 14 40 40 H 1.07995 * 120.00122 * 180.19349 * 25 24 15 41 41 H 1.08001 * 119.47755 * 179.82852 * 26 25 24 42 42 H 1.09000 * 109.43076 * 344.46176 * 28 11 9 43 43 H 1.09006 * 109.43036 * 104.35889 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2246 1.1242 0.0000 4 16 3.9393 0.7336 0.0027 5 6 3.5801 -0.9880 -0.0056 6 17 4.7644 -2.2573 -0.0118 7 6 2.2539 -1.1699 -0.0060 8 7 1.6624 -2.4489 -0.0126 9 6 2.0696 -3.3752 -0.9030 10 8 3.0170 -3.1449 -1.6297 11 7 1.4266 -4.5566 -0.9881 12 6 1.9072 -5.6280 -1.8764 13 6 2.3156 -6.8132 -0.9944 14 6 1.2494 -7.1151 0.0250 15 6 1.2550 -8.3982 0.6195 16 6 2.2169 -9.3559 0.2236 17 1 3.1877 -9.0344 -0.1242 18 6 1.9113 -10.7204 0.2823 19 7 0.6814 -11.1060 0.5063 20 14 3.2593 -11.9907 0.0407 21 1 4.3012 -11.8113 1.0835 22 1 2.6799 -13.3537 0.1484 23 1 3.8683 -11.8169 -1.3025 24 6 0.3058 -8.7224 1.6021 25 6 -0.6325 -7.7864 1.9742 26 6 -0.6377 -6.5379 1.3785 27 6 0.2980 -6.2037 0.4023 28 6 0.2164 -4.8248 -0.2041 29 1 -0.3633 -0.0053 1.0277 30 1 -0.3634 -0.8874 -0.5183 31 1 -0.3633 0.8926 -0.5092 32 1 1.8146 2.1233 0.0005 33 1 0.9622 -2.6627 0.6238 34 1 1.1101 -5.9286 -2.5565 35 1 2.7667 -5.2762 -2.4470 36 1 3.2465 -6.5752 -0.4797 37 1 2.4682 -7.6899 -1.6238 38 1 0.4695 -12.0517 0.5466 39 1 0.3120 -9.6991 2.0629 40 1 -1.3640 -8.0267 2.7314 41 1 -1.3794 -5.8109 1.6748 42 1 0.1275 -4.0839 0.5905 43 1 -0.6569 -4.7663 -0.8537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585123676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:11 Heat of formation + Delta-G solvation = 34.817067 kcal Electronic energy + Delta-G solvation = -29328.455233 eV Core-core repulsion = 25298.287086 eV Total energy + Delta-G solvation = -4030.168147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 376.075 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.60781 -38.91060 -37.78606 -36.43340 -35.44787 -34.02124 -33.65488 -31.85596 -30.52433 -30.04878 -28.77724 -27.25216 -25.31153 -24.95926 -23.62183 -22.57089 -20.68059 -20.53195 -19.57358 -18.87804 -17.99503 -17.26524 -17.10535 -16.53981 -15.67430 -15.24825 -14.99127 -14.58150 -14.43851 -14.22436 -13.92650 -13.83888 -13.69394 -13.40999 -13.28305 -12.98807 -12.81441 -12.55293 -12.42296 -12.26699 -11.85454 -11.58418 -11.44065 -11.27110 -11.22944 -11.15505 -11.04489 -10.87925 -10.81717 -10.52524 -10.23204 -10.04836 -9.73373 -9.58478 -9.33407 -9.23589 -8.59746 -8.36876 -8.04454 -7.33508 -7.31988 -6.75518 -4.43566 0.67223 1.03250 1.62709 2.23874 2.31402 2.72277 2.81320 2.89329 3.04391 3.07547 3.15734 3.42568 3.90538 4.00070 4.56519 4.73685 4.78865 5.12653 5.26550 5.35015 5.44486 5.48010 5.53085 5.61796 5.72326 5.84186 5.87922 5.92701 5.96284 6.00257 6.26959 6.30323 6.40929 6.58763 6.63887 6.81374 6.84819 7.02470 7.08977 7.21093 7.29201 7.54577 7.75751 7.94450 7.99513 8.05089 8.21945 8.56776 8.73794 8.83603 8.89590 10.18248 Molecular weight = 376.08amu Principal moments of inertia in cm(-1) A = 0.015505 B = 0.002522 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.452480 B =11099.209692 C =12205.174123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.100 4.100 3 C -0.209 4.209 4 S 0.149 5.851 5 C -0.145 4.145 6 Cl 0.017 6.983 7 C 0.157 3.843 8 N -0.679 5.679 9 C 0.708 3.292 10 O -0.568 6.568 11 N -0.616 5.616 12 C 0.132 3.868 13 C -0.070 4.070 14 C -0.164 4.164 15 C 0.110 3.890 16 C -0.460 4.460 17 H 0.078 0.922 18 C 0.075 3.925 19 N -0.800 5.800 20 Si 0.908 3.092 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.265 1.265 24 C -0.156 4.156 25 C -0.106 4.106 26 C -0.231 4.231 27 C -0.083 4.083 28 C 0.164 3.836 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.173 0.827 33 H 0.407 0.593 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.280 0.720 39 H 0.119 0.881 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.128 19.335 -0.117 19.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.346 4.346 4 S 0.410 5.590 5 C -0.292 4.292 6 Cl 0.046 6.954 7 C 0.050 3.950 8 N -0.333 5.333 9 C 0.410 3.590 10 O -0.444 6.444 11 N -0.352 5.352 12 C 0.010 3.990 13 C -0.108 4.108 14 C -0.165 4.165 15 C 0.108 3.892 16 C -0.490 4.490 17 H 0.096 0.904 18 C -0.142 4.142 19 N -0.426 5.426 20 Si 0.733 3.267 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.190 1.190 24 C -0.176 4.176 25 C -0.125 4.125 26 C -0.251 4.251 27 C -0.084 4.084 28 C 0.041 3.959 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.190 0.810 33 H 0.246 0.754 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.136 0.864 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.869 19.939 -0.675 20.038 hybrid contribution -1.153 -1.869 0.336 2.222 sum 0.716 18.070 -0.339 18.087 Atomic orbital electron populations 1.20509 0.88909 1.03304 1.02638 1.18585 0.97808 0.90690 1.04382 1.25268 0.95762 1.02196 1.11327 1.84262 1.05459 0.95396 1.73848 1.25152 0.93691 0.95166 1.15212 1.98393 1.53667 1.46998 1.96368 1.16091 0.89099 0.85342 1.04511 1.42577 1.43159 1.10130 1.37433 1.15687 0.82364 0.80023 0.80885 1.90969 1.28719 1.78617 1.46134 1.47209 1.28674 1.13414 1.45914 1.21724 0.99762 0.85867 0.91656 1.20546 0.97095 0.96664 0.96495 1.19274 0.99244 0.95905 1.02117 1.17608 0.92021 0.90459 0.89106 1.19539 1.00552 0.90209 1.38720 0.90396 1.25875 0.95893 0.99776 0.92688 1.69783 1.18672 1.17982 1.36191 0.86359 0.81403 0.78956 0.79979 1.18934 1.20382 1.18971 1.21294 0.98027 0.99120 0.99136 1.20595 0.98567 0.93999 0.99291 1.20170 1.02940 0.97753 1.04269 1.19052 0.97678 0.93359 0.98333 1.20341 0.86471 0.95708 0.93426 0.90781 0.91198 0.91005 0.80954 0.75370 0.91423 0.89386 0.92653 0.90072 0.90915 0.86360 0.89321 0.89502 0.91412 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 9.97 36.01 0.36 -0.36 16 2 C -0.10 -1.03 5.81 -106.11 -0.62 -1.65 16 3 C -0.21 -1.85 10.97 29.03 0.32 -1.53 16 4 S 0.15 1.54 23.33 -107.50 -2.51 -0.97 16 5 C -0.15 -2.03 6.57 29.20 0.19 -1.84 16 6 Cl 0.02 0.27 25.81 -51.86 -1.34 -1.07 16 7 C 0.16 2.09 5.97 -85.00 -0.51 1.58 16 8 N -0.68 -9.46 4.70 -15.14 -0.07 -9.53 16 9 C 0.71 11.98 7.71 -86.92 -0.67 11.31 16 10 O -0.57 -11.01 12.53 5.27 0.07 -10.94 16 11 N -0.62 -10.37 2.93 -179.79 -0.53 -10.90 16 12 C 0.13 2.31 6.48 -3.49 -0.02 2.29 16 13 C -0.07 -1.41 4.98 -27.80 -0.14 -1.55 16 14 C -0.16 -3.69 5.82 -103.91 -0.60 -4.29 16 15 C 0.11 2.78 5.55 -106.67 -0.59 2.19 16 16 C -0.46 -11.62 7.95 -37.74 -0.30 -11.92 16 17 H 0.08 1.90 6.96 -52.48 -0.37 1.54 16 18 C 0.07 1.81 5.25 -17.34 -0.09 1.72 16 19 N -0.80 -20.13 10.87 55.55 0.60 -19.52 16 20 Si 0.91 18.42 29.57 -169.99 -5.03 13.39 16 21 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 24 C -0.16 -3.89 8.62 -38.98 -0.34 -4.23 16 25 C -0.11 -2.35 10.03 -39.76 -0.40 -2.75 16 26 C -0.23 -4.70 9.63 -39.15 -0.38 -5.08 16 27 C -0.08 -1.68 5.82 -104.59 -0.61 -2.29 16 28 C 0.16 2.59 6.19 -5.03 -0.03 2.56 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.59 7.80 -51.93 -0.41 0.18 16 31 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 32 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.41 4.83 6.42 -40.82 -0.26 4.57 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.09 1.53 7.07 -51.93 -0.37 1.16 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.08 1.66 7.08 -51.93 -0.37 1.29 16 38 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 39 H 0.12 3.08 6.27 -52.49 -0.33 2.75 16 40 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.09 1.51 8.05 -52.49 -0.42 1.09 16 42 H 0.07 0.90 5.75 -51.93 -0.30 0.60 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 374.89 15.07 5.65 5.65 Total: -1.00 -28.99 374.89 -12.49 -41.47 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -4.91 Total: 8.25 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -4.43 Total: -15.83 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.01 Total: -39.95 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.07 Total: -10.94 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.51 Total: -0.97 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.34 Total: -1.07 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.99 -12.49 -41.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585123676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.291 kcal (2) G-P(sol) polarization free energy of solvation -28.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds