Wall clock time and date at job start Tue Mar 31 2020 05:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00047 * 2 1 4 4 H 1.48498 * 109.47072 * 359.97438 * 3 2 1 5 5 H 1.48510 * 109.46921 * 240.00201 * 3 2 1 6 6 H 1.48495 * 109.47073 * 120.00197 * 3 2 1 7 7 C 1.38812 * 119.99681 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99331 * 204.22261 * 7 2 1 9 9 N 1.36929 * 120.00293 * 24.22601 * 7 2 1 10 10 C 1.46928 * 120.63070 * 29.21000 * 9 7 2 11 11 C 1.53197 * 108.77597 * 126.36944 * 10 9 7 12 12 C 1.53038 * 109.31086 * 54.63502 * 11 10 9 13 13 C 1.53035 * 109.53842 * 298.63156 * 12 11 10 14 14 H 1.08999 * 109.50063 * 301.41870 * 13 12 11 15 15 C 1.50696 * 109.49926 * 181.35010 * 13 12 11 16 16 C 1.38643 * 120.40746 * 275.00664 * 15 13 12 17 17 C 1.38590 * 118.55455 * 180.02562 * 16 15 13 18 18 N 1.32275 * 119.19504 * 359.97438 * 17 16 15 19 19 C 1.32464 * 120.74688 * 0.02562 * 18 17 16 20 20 N 1.38625 * 119.21337 * 180.02562 * 19 18 17 21 21 C 1.38685 * 120.00255 * 359.97438 * 20 19 18 22 22 N 1.29543 * 125.26011 * 179.72189 * 21 20 19 23 23 C 1.33753 * 115.64009 * 179.79623 * 22 21 20 24 24 C 1.47024 * 122.51331 * 180.23850 * 23 22 21 25 25 O 1.21573 * 119.99895 * 180.28567 * 24 23 22 26 26 O 1.34823 * 120.00100 * 0.28235 * 24 23 22 27 27 C 1.34932 * 114.97106 * 0.49884 * 23 22 21 28 28 S 1.70980 * 109.20856 * 359.74198 * 27 23 22 29 29 N 1.32255 * 120.40525 * 94.72401 * 15 13 12 30 30 C 1.46925 * 120.63008 * 208.92943 * 9 7 2 31 31 H 0.96996 * 120.00148 * 185.77328 * 1 2 3 32 32 H 1.09005 * 109.58934 * 246.15717 * 10 9 7 33 33 H 1.08998 * 109.58509 * 6.58053 * 10 9 7 34 34 H 1.09001 * 109.49527 * 174.59006 * 11 10 9 35 35 H 1.08998 * 109.49465 * 294.68088 * 11 10 9 36 36 H 1.08994 * 109.46226 * 58.65516 * 12 11 10 37 37 H 1.09004 * 109.45685 * 178.63068 * 12 11 10 38 38 H 1.08006 * 120.71835 * 0.02562 * 16 15 13 39 39 H 1.07999 * 120.39788 * 180.02562 * 17 16 15 40 40 H 0.97006 * 119.99809 * 180.02562 * 20 19 18 41 41 H 0.96697 * 117.00260 * 179.97438 * 26 24 23 42 42 H 1.07998 * 125.39386 * 179.73619 * 27 23 22 43 43 H 1.08998 * 109.58820 * 353.42019 * 30 9 7 44 44 H 1.09003 * 109.58698 * 113.84476 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6964 -1.2126 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0190 -1.2435 0.3832 9 7 1.4160 -2.3356 -0.4876 10 6 0.3969 -2.2523 -1.5427 11 6 0.8084 -3.1686 -2.6993 12 6 1.0456 -4.5829 -2.1648 13 6 2.1818 -4.5588 -1.1399 14 1 3.0859 -4.1696 -1.6081 15 6 2.4368 -5.9569 -0.6387 16 6 1.6879 -6.4751 0.4066 17 6 1.9552 -7.7650 0.8372 18 7 2.9106 -8.4592 0.2415 19 6 3.6081 -7.9345 -0.7550 20 7 4.6019 -8.6906 -1.3569 21 6 4.8563 -9.9800 -0.9143 22 7 5.7537 -10.7755 -1.4043 23 6 5.8378 -11.9789 -0.8266 24 6 6.8062 -12.9971 -1.2592 25 8 6.8396 -14.0785 -0.7047 26 8 7.6571 -12.7316 -2.2707 27 6 4.9637 -12.1903 0.1793 28 16 4.0048 -10.7911 0.3947 29 7 3.3741 -6.7066 -1.1943 30 6 1.7899 -3.6586 0.0305 31 1 -0.4850 -0.8357 0.0845 32 1 -0.5664 -2.5740 -1.1466 33 1 0.3229 -1.2248 -1.8989 34 1 0.0150 -3.1902 -3.4464 35 1 1.7255 -2.7924 -3.1528 36 1 0.1356 -4.9488 -1.6896 37 1 1.3150 -5.2424 -2.9898 38 1 0.9131 -5.8863 0.8751 39 1 1.3897 -8.1984 1.6489 40 1 5.1198 -8.3174 -2.0874 41 1 8.2757 -13.4319 -2.5193 42 1 4.8825 -13.0993 0.7567 43 1 2.6348 -3.5589 0.7119 44 1 0.9426 -4.0975 0.5576 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585291918.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:47 Heat of formation + Delta-G solvation = 36.604513 kcal Electronic energy + Delta-G solvation = -30342.916073 eV Core-core repulsion = 26002.127684 eV Total energy + Delta-G solvation = -4340.788389 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 375.115 amu Computer time = 2.91 seconds Orbital eigenvalues (eV) -41.54380 -40.83327 -39.36494 -38.17376 -36.53984 -36.28890 -34.57336 -33.24647 -31.89255 -30.56242 -30.00930 -29.29390 -26.53846 -25.28820 -24.98847 -24.28106 -22.99354 -22.25436 -21.37189 -20.60491 -19.78622 -19.10351 -18.26389 -17.89401 -17.55837 -17.08331 -16.49822 -16.37801 -16.32201 -15.99132 -15.76723 -14.75754 -14.56445 -14.47808 -14.18383 -14.02920 -13.74779 -13.62498 -13.44671 -13.40499 -13.24469 -12.40094 -12.32611 -12.10165 -11.93381 -11.81080 -11.34046 -11.21026 -11.11472 -11.00001 -10.77709 -10.55144 -10.39738 -10.21099 -10.15150 -10.12370 -10.02934 -9.92725 -9.43540 -9.36454 -9.30605 -8.47099 -8.28720 -6.99979 -6.15639 -3.34890 0.12629 0.68530 0.76533 0.85075 1.34425 1.57510 1.91207 2.82977 2.85084 3.45002 3.48545 3.54773 3.65938 3.66899 3.97138 4.31911 4.43548 4.54155 4.83569 4.91308 5.02342 5.08334 5.16093 5.23855 5.28581 5.36272 5.46084 5.48871 5.61754 5.78525 5.89294 5.97281 6.04716 6.07421 6.26047 6.33883 6.38439 6.42930 6.47118 6.53977 6.60155 6.82622 6.98638 7.09713 7.17842 7.60476 7.82144 7.91820 8.48758 9.00188 9.73854 10.16591 11.12835 Molecular weight = 375.12amu Principal moments of inertia in cm(-1) A = 0.022287 B = 0.001680 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.031236 B =16663.603884 C =16925.883854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.020 4.020 3 Si 1.064 2.936 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.354 4.354 8 H 0.056 0.944 9 N -0.594 5.594 10 C 0.147 3.853 11 C -0.137 4.137 12 C -0.093 4.093 13 C -0.064 4.064 14 H 0.094 0.906 15 C 0.247 3.753 16 C -0.256 4.256 17 C 0.195 3.805 18 N -0.577 5.577 19 C 0.549 3.451 20 N -0.584 5.584 21 C 0.282 3.718 22 N -0.480 5.480 23 C 0.042 3.958 24 C 0.565 3.435 25 O -0.513 6.513 26 O -0.495 6.495 27 C -0.277 4.277 28 S 0.316 5.684 29 N -0.543 5.543 30 C 0.159 3.841 31 H 0.269 0.731 32 H 0.020 0.980 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.159 0.841 39 H 0.178 0.822 40 H 0.438 0.562 41 H 0.412 0.588 42 H 0.189 0.811 43 H 0.058 0.942 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.579 -22.716 -0.665 23.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.222 4.222 3 Si 0.893 3.107 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.483 4.483 8 H 0.074 0.926 9 N -0.316 5.316 10 C 0.022 3.978 11 C -0.176 4.176 12 C -0.132 4.132 13 C -0.086 4.086 14 H 0.113 0.887 15 C 0.100 3.900 16 C -0.280 4.280 17 C 0.031 3.969 18 N -0.300 5.300 19 C 0.191 3.809 20 N -0.220 5.220 21 C -0.090 4.090 22 N -0.203 5.203 23 C -0.092 4.092 24 C 0.407 3.593 25 O -0.402 6.402 26 O -0.305 6.305 27 C -0.422 4.422 28 S 0.568 5.432 29 N -0.263 5.263 30 C 0.031 3.969 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.177 0.823 39 H 0.195 0.805 40 H 0.280 0.720 41 H 0.270 0.730 42 H 0.206 0.794 43 H 0.076 0.924 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 5.333 -21.090 -0.611 21.763 hybrid contribution 1.084 -2.312 -0.415 2.587 sum 6.417 -23.403 -1.026 24.288 Atomic orbital electron populations 1.70792 1.06596 1.30385 1.47436 1.25872 0.96515 1.01483 0.98379 0.83540 0.74827 0.76000 0.76293 1.21039 1.21961 1.21917 1.19942 0.97151 0.88157 1.43037 0.92629 1.44051 1.46625 1.00975 1.39995 1.21016 0.90495 0.99083 0.87229 1.22073 1.01209 0.95041 0.99255 1.21371 0.96691 0.98138 0.96971 1.20874 1.00821 0.87264 0.99613 0.88737 1.21777 0.85320 0.95016 0.87914 1.22765 1.05404 0.98215 1.01603 1.22908 0.89295 0.90102 0.94573 1.66817 1.12052 1.38733 1.12436 1.18852 0.87651 0.86551 0.87818 1.40345 1.35427 1.09016 1.37184 1.24064 0.96876 0.90246 0.97814 1.67072 1.20881 1.02624 1.29724 1.18517 1.00522 0.91582 0.98559 1.19689 0.78325 0.84699 0.76613 1.90935 1.69689 1.24278 1.55260 1.84721 1.47106 1.48936 1.49742 1.27226 1.02666 1.08992 1.03284 1.85218 1.30477 0.98229 1.29259 1.67646 1.21972 1.04365 1.32305 1.20853 0.97915 0.86363 0.91752 0.91977 0.96246 0.90193 0.92546 0.92029 0.92318 0.92945 0.82338 0.80536 0.72008 0.73023 0.79423 0.92351 0.95817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.97 12.45 55.49 0.69 -25.28 16 2 C -0.02 -0.54 4.69 -17.43 -0.08 -0.62 16 3 Si 1.06 24.22 29.98 -169.99 -5.10 19.12 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.35 -9.31 9.48 -15.06 -0.14 -9.45 16 8 H 0.06 1.48 7.94 -52.48 -0.42 1.06 16 9 N -0.59 -13.62 2.84 -172.57 -0.49 -14.11 16 10 C 0.15 3.15 4.70 -3.71 -0.02 3.14 16 11 C -0.14 -2.34 6.08 -26.61 -0.16 -2.50 16 12 C -0.09 -1.40 5.15 -26.69 -0.14 -1.53 16 13 C -0.06 -1.01 2.67 -91.87 -0.25 -1.25 16 14 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 15 C 0.25 3.35 5.83 -82.26 -0.48 2.87 16 16 C -0.26 -2.81 9.25 -39.30 -0.36 -3.17 16 17 C 0.19 1.78 11.30 -17.23 -0.19 1.58 16 18 N -0.58 -6.22 6.82 -13.89 -0.09 -6.31 16 19 C 0.55 6.76 8.39 -322.53 -2.71 4.05 16 20 N -0.58 -6.58 5.55 -13.70 -0.08 -6.66 16 21 C 0.28 3.19 8.38 -87.72 -0.73 2.45 16 22 N -0.48 -5.90 10.62 -10.58 -0.11 -6.01 16 23 C 0.04 0.48 6.66 -84.64 -0.56 -0.09 16 24 C 0.57 6.27 8.31 34.29 0.28 6.55 16 25 O -0.51 -6.42 17.44 -19.32 -0.34 -6.76 16 26 O -0.50 -4.41 13.35 -40.83 -0.54 -4.96 16 27 C -0.28 -2.60 10.55 29.56 0.31 -2.28 16 28 S 0.32 2.83 19.95 -107.50 -2.14 0.69 16 29 N -0.54 -7.45 10.40 -10.10 -0.11 -7.55 16 30 C 0.16 2.93 5.37 -3.93 -0.02 2.91 16 31 H 0.27 7.66 6.71 -40.82 -0.27 7.38 16 32 H 0.02 0.42 7.86 -51.93 -0.41 0.01 16 33 H 0.08 1.96 6.39 -51.93 -0.33 1.63 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.16 1.59 6.32 -52.48 -0.33 1.26 16 39 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.44 4.49 8.94 -40.82 -0.36 4.12 16 41 H 0.41 1.48 9.11 45.56 0.42 1.90 16 42 H 0.19 1.42 7.99 -52.49 -0.42 1.00 16 43 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 44 H 0.02 0.42 6.30 -51.93 -0.33 0.09 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -32.96 381.76 -12.01 -44.98 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -4.20 Total: 4.45 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -5.25 Total: 2.65 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: -0.19 Total: -65.92 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -0.88 Total: -11.71 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -5.10 Total: 19.12 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -2.14 Total: 0.69 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.96 -12.01 -44.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585291918.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.581 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.91 seconds