Wall clock time and date at job start Tue Mar 31 2020 05:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99851 * 2 1 4 4 H 1.48498 * 109.47159 * 270.00029 * 3 2 1 5 5 H 1.48506 * 109.46921 * 29.99867 * 3 2 1 6 6 H 1.48506 * 109.47415 * 149.99922 * 3 2 1 7 7 C 1.38814 * 120.00362 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00007 * 197.37545 * 7 2 1 9 9 N 1.36933 * 119.99763 * 17.36210 * 7 2 1 10 10 C 1.46927 * 120.63053 * 207.68516 * 9 7 2 11 11 C 1.53192 * 108.77966 * 233.59096 * 10 9 7 12 12 C 1.53035 * 109.31269 * 305.36977 * 11 10 9 13 13 C 1.53039 * 109.54256 * 61.35970 * 12 11 10 14 14 H 1.08997 * 109.49163 * 58.61709 * 13 12 11 15 15 C 1.50697 * 109.50080 * 178.68585 * 13 12 11 16 16 C 1.38637 * 120.40416 * 85.00173 * 15 13 12 17 17 C 1.38590 * 118.55274 * 180.02562 * 16 15 13 18 18 N 1.32291 * 119.19406 * 0.02562 * 17 16 15 19 19 C 1.32462 * 120.74612 * 359.97438 * 18 17 16 20 20 N 1.38623 * 119.21786 * 179.97438 * 19 18 17 21 21 C 1.38691 * 119.99487 * 359.97438 * 20 19 18 22 22 N 1.29550 * 125.25676 * 180.28444 * 21 20 19 23 23 C 1.33746 * 115.63983 * 180.21371 * 22 21 20 24 24 C 1.47025 * 122.51600 * 179.75652 * 23 22 21 25 25 O 1.21571 * 119.99959 * 179.43946 * 24 23 22 26 26 O 1.34822 * 119.99740 * 359.71656 * 24 23 22 27 27 C 1.34933 * 114.97216 * 359.49270 * 23 22 21 28 28 S 1.70979 * 109.21056 * 0.26599 * 27 23 22 29 29 N 1.32259 * 120.40006 * 265.27390 * 15 13 12 30 30 C 1.46924 * 120.63428 * 27.67221 * 9 7 2 31 31 H 0.96998 * 120.00305 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.58308 * 113.80413 * 10 9 7 33 33 H 1.09007 * 109.70335 * 353.45329 * 10 9 7 34 34 H 1.08996 * 109.49783 * 185.41521 * 11 10 9 35 35 H 1.08996 * 109.52108 * 65.33285 * 11 10 9 36 36 H 1.09008 * 109.45566 * 301.34160 * 12 11 10 37 37 H 1.09004 * 109.44916 * 181.38042 * 12 11 10 38 38 H 1.07995 * 120.72225 * 0.04015 * 16 15 13 39 39 H 1.07998 * 120.40570 * 179.97438 * 17 16 15 40 40 H 0.96995 * 120.00115 * 180.02562 * 20 19 18 41 41 H 0.96696 * 116.99852 * 179.72653 * 26 24 23 42 42 H 1.07997 * 125.40085 * 180.26458 * 27 23 22 43 43 H 1.09003 * 109.58198 * 6.62075 * 30 9 7 44 44 H 1.08993 * 109.58742 * 246.20003 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0533 -1.2235 0.2788 9 7 1.3724 -2.3608 -0.3549 10 6 1.8194 -3.6548 0.1787 11 6 2.0744 -4.6094 -0.9919 12 6 0.8188 -4.6887 -1.8632 13 6 0.5008 -3.3033 -2.4302 14 1 1.3492 -2.9455 -3.0135 15 6 -0.7170 -3.3887 -3.3137 16 6 -1.9881 -3.3063 -2.7665 17 6 -3.0811 -3.3899 -3.6144 18 7 -2.8802 -3.5455 -4.9127 19 6 -1.6522 -3.6207 -5.4037 20 7 -1.4782 -3.7844 -6.7692 21 6 -2.5828 -3.8679 -7.6037 22 7 -2.5388 -4.0256 -8.8889 23 6 -3.7240 -4.0768 -9.5065 24 6 -3.8503 -4.2464 -10.9615 25 8 -4.9514 -4.2971 -11.4742 26 8 -2.7450 -4.3513 -11.7263 27 6 -4.7953 -3.9666 -8.6936 28 16 -4.2605 -3.7838 -7.0799 29 7 -0.5862 -3.5487 -4.6201 30 6 0.2279 -2.3339 -1.2758 31 1 -0.4850 0.8400 -0.0004 32 1 1.0470 -4.0692 0.8266 33 1 2.7396 -3.5197 0.7473 34 1 2.3137 -5.6008 -0.6074 35 1 2.9083 -4.2396 -1.5885 36 1 -0.0203 -5.0356 -1.2600 37 1 0.9894 -5.3863 -2.6832 38 1 -2.1236 -3.1794 -1.7026 39 1 -4.0847 -3.3297 -3.2201 40 1 -0.5841 -3.8412 -7.1408 41 1 -2.8783 -4.4656 -12.6772 42 1 -5.8271 -3.9902 -9.0116 43 1 0.0986 -1.3253 -1.6685 44 1 -0.6742 -2.6406 -0.7465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585291922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:53 Heat of formation + Delta-G solvation = 38.800958 kcal Electronic energy + Delta-G solvation = -30603.123952 eV Core-core repulsion = 26262.430809 eV Total energy + Delta-G solvation = -4340.693144 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 375.115 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.33514 -40.74104 -39.25756 -37.95623 -36.42479 -36.15730 -34.26330 -33.07054 -31.97568 -30.29003 -29.99018 -29.20061 -26.43801 -25.43203 -24.87341 -24.12759 -22.87498 -22.19513 -21.25007 -20.48496 -19.69445 -19.01775 -18.12935 -17.78102 -17.18173 -16.73731 -16.38528 -16.22854 -16.21394 -15.69634 -15.60425 -14.98585 -14.41421 -14.38123 -14.16060 -13.93993 -13.73770 -13.44373 -13.29022 -13.09510 -12.95635 -12.43910 -12.17023 -11.96598 -11.76869 -11.70517 -11.20445 -11.13049 -10.98112 -10.91787 -10.83364 -10.51931 -10.38253 -10.29253 -10.09932 -10.05025 -9.89809 -9.88826 -9.58027 -9.21125 -9.16884 -8.58451 -8.13771 -6.81497 -5.91912 -3.33464 0.24825 0.80530 0.95250 1.05196 1.46405 1.69446 2.05647 2.92507 2.93738 3.31756 3.39736 3.39862 3.75460 3.84820 4.13593 4.40385 4.51034 4.64548 4.94463 5.11808 5.13511 5.25742 5.31960 5.37295 5.45409 5.49001 5.55760 5.59980 5.80212 5.95258 6.04983 6.11978 6.12773 6.24906 6.36913 6.43661 6.49573 6.55709 6.63401 6.71868 6.86655 6.99436 7.15460 7.30630 7.41809 7.68558 7.69774 8.01648 8.31583 9.07883 9.71035 10.26594 11.16804 Molecular weight = 375.12amu Principal moments of inertia in cm(-1) A = 0.015207 B = 0.001943 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.859032 B =14404.725069 C =14877.101453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.254 4.254 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.133 4.133 12 C -0.094 4.094 13 C -0.074 4.074 14 H 0.090 0.910 15 C 0.249 3.751 16 C -0.247 4.247 17 C 0.191 3.809 18 N -0.579 5.579 19 C 0.545 3.455 20 N -0.585 5.585 21 C 0.284 3.716 22 N -0.482 5.482 23 C 0.041 3.959 24 C 0.566 3.434 25 O -0.514 6.514 26 O -0.495 6.495 27 C -0.279 4.279 28 S 0.317 5.683 29 N -0.544 5.544 30 C 0.181 3.819 31 H 0.255 0.745 32 H 0.020 0.980 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.162 0.838 39 H 0.177 0.823 40 H 0.437 0.563 41 H 0.411 0.589 42 H 0.188 0.812 43 H 0.091 0.909 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.745 -10.460 -12.674 18.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.384 4.384 8 H 0.086 0.914 9 N -0.310 5.310 10 C 0.016 3.984 11 C -0.173 4.173 12 C -0.132 4.132 13 C -0.095 4.095 14 H 0.108 0.892 15 C 0.102 3.898 16 C -0.271 4.271 17 C 0.028 3.972 18 N -0.302 5.302 19 C 0.187 3.813 20 N -0.220 5.220 21 C -0.088 4.088 22 N -0.206 5.206 23 C -0.092 4.092 24 C 0.407 3.593 25 O -0.403 6.403 26 O -0.305 6.305 27 C -0.424 4.424 28 S 0.569 5.431 29 N -0.264 5.264 30 C 0.054 3.946 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.179 0.821 39 H 0.194 0.806 40 H 0.279 0.721 41 H 0.269 0.731 42 H 0.205 0.795 43 H 0.109 0.891 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -8.979 -10.299 -12.573 18.568 hybrid contribution 0.580 0.827 -1.147 1.528 sum -8.399 -9.472 -13.720 18.668 Atomic orbital electron populations 1.69992 1.05247 1.25707 1.53629 1.25029 0.95329 0.98497 1.00601 0.86295 0.79220 0.83521 0.77785 1.21389 1.21688 1.20324 1.19202 0.92900 0.84734 1.41525 0.91425 1.43977 1.35918 1.01750 1.49321 1.20969 0.97826 0.86648 0.92941 1.22007 0.97147 0.99293 0.98818 1.21364 0.98665 0.94720 0.98489 1.21197 0.92903 0.98878 0.96537 0.89169 1.21809 0.95985 0.84223 0.87778 1.22811 0.93484 1.06671 1.04113 1.22892 1.00247 0.88070 0.86024 1.66774 1.22375 1.23887 1.17163 1.18849 0.85965 0.91570 0.84926 1.40335 1.07226 1.73409 1.01074 1.24075 0.92864 1.01972 0.89862 1.67075 1.26833 1.21756 1.04919 1.18504 0.87382 1.11368 0.91991 1.19706 0.81538 0.71857 0.86189 1.90929 1.27735 1.47561 1.74043 1.84726 1.36674 1.84206 1.24905 1.27231 1.04989 1.07751 1.02452 1.85260 0.95349 1.64177 0.98289 1.67661 1.31903 1.20556 1.06311 1.20891 0.89291 0.97620 0.86788 0.93516 0.96183 0.92587 0.92668 0.92083 0.92336 0.93209 0.82077 0.80650 0.72113 0.73105 0.79509 0.89096 0.95446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.33 11.19 55.49 0.62 -23.71 16 2 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 3 Si 0.90 20.81 29.59 -169.99 -5.03 15.78 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.25 -6.53 9.59 -15.06 -0.14 -6.67 16 8 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -13.43 2.99 -172.32 -0.52 -13.95 16 10 C 0.14 2.69 6.51 -3.71 -0.02 2.67 16 11 C -0.13 -2.08 6.08 -26.61 -0.16 -2.24 16 12 C -0.09 -1.42 5.15 -26.69 -0.14 -1.56 16 13 C -0.07 -1.26 2.69 -91.66 -0.25 -1.51 16 14 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 15 C 0.25 3.86 5.83 -82.26 -0.48 3.38 16 16 C -0.25 -3.28 9.25 -39.30 -0.36 -3.65 16 17 C 0.19 2.12 11.30 -17.22 -0.19 1.93 16 18 N -0.58 -7.20 6.82 -13.88 -0.09 -7.30 16 19 C 0.54 7.55 8.39 -322.53 -2.71 4.84 16 20 N -0.58 -7.33 5.55 -13.70 -0.08 -7.40 16 21 C 0.28 3.54 8.38 -87.71 -0.73 2.80 16 22 N -0.48 -6.40 10.62 -10.58 -0.11 -6.51 16 23 C 0.04 0.51 6.66 -84.65 -0.56 -0.05 16 24 C 0.57 6.70 8.31 34.29 0.28 6.98 16 25 O -0.51 -6.79 17.44 -19.32 -0.34 -7.13 16 26 O -0.50 -4.75 13.35 -40.82 -0.54 -5.30 16 27 C -0.28 -2.89 10.55 29.56 0.31 -2.58 16 28 S 0.32 3.21 19.95 -107.50 -2.14 1.07 16 29 N -0.54 -8.35 10.40 -10.10 -0.11 -8.45 16 30 C 0.18 3.79 4.17 -3.71 -0.02 3.77 16 31 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 1.05 7.94 -51.93 -0.41 0.64 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.16 2.09 6.32 -52.49 -0.33 1.76 16 39 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.44 4.99 8.94 -40.82 -0.36 4.62 16 41 H 0.41 1.73 9.11 45.56 0.42 2.15 16 42 H 0.19 1.59 7.99 -52.49 -0.42 1.17 16 43 H 0.09 2.22 6.04 -51.93 -0.31 1.90 16 44 H 0.03 0.58 6.31 -51.93 -0.33 0.25 16 LS Contribution 382.71 15.07 5.77 5.77 Total: -1.00 -31.65 382.71 -12.10 -43.74 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.26 Total: 5.25 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: -5.26 Total: 8.14 kcal Atomic # 7 Polarization: -67.04 SS G_CDS: -0.28 Total: -67.32 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.88 Total: -12.43 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -2.14 Total: 1.07 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.65 -12.10 -43.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585291922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.545 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds