Wall clock time and date at job start Tue Mar 31 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45201 * 109.46892 * 2 1 4 4 C 1.34233 * 116.99628 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99865 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99892 * 179.97438 * 4 3 2 7 7 H 1.08996 * 109.46817 * 32.47770 * 6 4 3 8 8 C 1.50706 * 109.46863 * 272.48325 * 6 4 3 9 9 N 1.31837 * 122.74192 * 285.02122 * 8 6 4 10 10 C 1.29115 * 117.08603 * 180.02562 * 9 8 6 11 11 Br 1.89099 * 124.92113 * 179.97438 * 10 9 8 12 12 S 1.70970 * 110.15934 * 359.97438 * 10 9 8 13 13 C 1.33585 * 122.74599 * 104.73727 * 8 6 4 14 14 C 1.50708 * 126.02394 * 359.97438 * 13 8 6 15 15 N 1.46897 * 109.47085 * 152.48625 * 6 4 3 16 16 C 1.46903 * 110.99528 * 299.96253 * 15 6 4 17 17 C 1.46905 * 111.00089 * 176.01439 * 15 6 4 18 18 C 1.50691 * 109.47002 * 189.99586 * 17 15 6 19 19 H 1.07996 * 120.00422 * 359.97438 * 18 17 15 20 20 C 1.37876 * 119.99756 * 179.97438 * 18 17 15 21 21 N 1.31511 * 120.00069 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00057 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47235 * 60.00067 * 22 20 18 24 24 H 1.48496 * 109.47347 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47056 * 300.00087 * 22 20 18 26 26 H 1.09004 * 109.46765 * 60.00552 * 1 2 3 27 27 H 1.09004 * 109.47032 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47341 * 300.00525 * 1 2 3 29 29 H 1.08995 * 109.47341 * 239.99475 * 2 1 3 30 30 H 1.09004 * 109.46783 * 120.00005 * 2 1 3 31 31 H 1.09000 * 109.46843 * 90.00281 * 14 13 8 32 32 H 1.09000 * 109.46925 * 210.00181 * 14 13 8 33 33 H 1.08997 * 109.47125 * 330.00501 * 14 13 8 34 34 H 1.08994 * 109.47195 * 65.34630 * 16 15 6 35 35 H 1.09003 * 109.46942 * 185.34791 * 16 15 6 36 36 H 1.09005 * 109.47513 * 305.34714 * 16 15 6 37 37 H 1.09001 * 109.46764 * 309.99527 * 17 15 6 38 38 H 1.08996 * 109.46771 * 69.99345 * 17 15 6 39 39 H 0.97008 * 120.00145 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.2583 3.6048 0.5511 8 6 4.0566 3.4242 -1.4198 9 7 5.0022 2.9967 -2.2328 10 6 5.0171 3.4876 -3.4269 11 35 6.2701 3.0335 -4.7685 12 16 3.7400 4.6078 -3.6194 13 6 3.2253 4.3201 -1.9591 14 6 2.0550 4.9717 -1.2683 15 7 5.2427 2.9208 0.6404 16 6 5.1488 2.4511 2.0292 17 6 5.8766 4.2443 0.5740 18 6 7.3138 4.1355 1.0136 19 1 7.7161 3.1790 1.3127 20 6 8.1153 5.2572 1.0338 21 7 7.6253 6.4221 0.6699 22 14 9.8968 5.1226 1.5793 23 1 10.6186 4.1820 0.6850 24 1 10.5376 6.4605 1.5121 25 1 9.9503 4.6182 2.9750 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 2.3853 5.8896 -0.7820 32 1 1.2844 5.2065 -2.0026 33 1 1.6490 4.2903 -0.5208 34 1 4.8306 1.4087 2.0395 35 1 6.1238 2.5382 2.5089 36 1 4.4224 3.0580 2.5698 37 1 5.8369 4.6152 -0.4502 38 1 5.3469 4.9342 1.2310 39 1 8.1891 7.2114 0.6845 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857706316.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:42 Heat of formation + Delta-G solvation = -24.584596 kcal Electronic energy + Delta-G solvation = -24826.220370 eV Core-core repulsion = 21135.906674 eV Total energy + Delta-G solvation = -3690.313696 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 376.024 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.72299 -39.52716 -36.89437 -35.77822 -33.31308 -32.44096 -31.78312 -31.10249 -29.19788 -27.35042 -25.70437 -24.65552 -23.84854 -23.04887 -21.28848 -20.64810 -18.83911 -18.22612 -17.24994 -16.67582 -16.42279 -15.72438 -15.46425 -14.99905 -14.67265 -14.22497 -13.96664 -13.61067 -13.46962 -13.25435 -13.04247 -12.96040 -12.80950 -12.50289 -12.26774 -12.01024 -11.78895 -11.62072 -11.41148 -11.04107 -10.92158 -10.79737 -10.73748 -10.58303 -10.48537 -10.41364 -10.13965 -9.86667 -9.41211 -9.25277 -9.11100 -8.53346 -8.39004 -7.36761 -6.02083 -4.01914 0.60783 0.84666 1.58726 1.70353 2.43855 2.62413 3.00775 3.36368 3.39498 3.44431 4.41143 4.50331 4.70617 4.82991 4.84515 4.89058 4.98422 5.16092 5.19202 5.34268 5.41086 5.54163 5.59942 5.65584 5.75169 5.79945 5.83678 6.05080 6.06789 6.19903 6.53919 6.72212 7.13972 7.19359 7.69149 7.79193 7.93745 8.09069 8.13185 8.46840 9.03781 9.61131 11.09004 Molecular weight = 376.02amu Principal moments of inertia in cm(-1) A = 0.006650 B = 0.005224 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4209.219863 B = 5358.346977 C = 7909.062877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.365 6.365 4 C 0.467 3.533 5 O -0.469 6.469 6 C 0.175 3.825 7 H 0.078 0.922 8 C 0.085 3.915 9 N -0.383 5.383 10 C 0.018 3.982 11 Br 0.047 6.953 12 S 0.177 5.823 13 C -0.195 4.195 14 C -0.081 4.081 15 N -0.506 5.506 16 C 0.029 3.971 17 C 0.202 3.798 18 C -0.502 4.502 19 H 0.065 0.935 20 C 0.058 3.942 21 N -0.899 5.899 22 Si 0.898 3.102 23 H -0.275 1.275 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.013 0.987 37 H 0.034 0.966 38 H -0.008 1.008 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.370 -5.311 -8.925 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.282 6.282 4 C 0.307 3.693 5 O -0.352 6.352 6 C 0.061 3.939 7 H 0.096 0.904 8 C -0.049 4.049 9 N -0.096 5.096 10 C -0.339 4.339 11 Br 0.128 6.872 12 S 0.428 5.572 13 C -0.317 4.317 14 C -0.140 4.140 15 N -0.233 5.233 16 C -0.119 4.119 17 C 0.078 3.922 18 C -0.540 4.540 19 H 0.083 0.917 20 C -0.144 4.144 21 N -0.539 5.539 22 Si 0.726 3.274 23 H -0.201 1.201 24 H -0.214 1.214 25 H -0.202 1.202 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.031 0.969 37 H 0.052 0.948 38 H 0.010 0.990 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.235 -5.734 -10.413 18.546 hybrid contribution 0.477 0.207 1.795 1.869 sum -13.758 -5.527 -8.618 17.150 Atomic orbital electron populations 1.21790 0.92797 1.02728 1.03423 1.22958 0.95115 0.80706 1.02506 1.86496 1.25016 1.32042 1.84680 1.23517 0.80125 0.92552 0.73142 1.90651 1.60035 1.42206 1.42342 1.19569 0.94360 0.89279 0.90648 0.90444 1.19223 0.92105 0.97795 0.95782 1.65964 1.19973 1.23949 0.99700 1.27897 1.03454 1.04637 0.97918 1.96775 1.55451 1.93097 1.41902 1.83684 1.22970 1.40527 1.09969 1.25958 1.04484 1.03621 0.97675 1.20389 0.92682 1.00973 0.99977 1.61998 1.13154 1.32021 1.16095 1.22395 1.02626 0.98294 0.88608 1.19764 0.94125 0.81247 0.97112 1.21035 0.94734 0.94583 1.43698 0.91688 1.24933 0.98699 0.95173 0.95556 1.69942 1.36447 0.99070 1.48401 0.86550 0.84624 0.77024 0.79193 1.20065 1.21371 1.20242 0.91569 0.90457 0.91487 0.91476 0.91332 0.89529 0.90610 0.89520 0.92934 0.89363 0.96856 0.94808 0.99019 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.29 37.16 0.38 -0.84 16 2 C 0.06 0.72 6.19 37.16 0.23 0.95 16 3 O -0.36 -5.45 10.22 -39.27 -0.40 -5.85 16 4 C 0.47 8.61 6.20 36.01 0.22 8.83 16 5 O -0.47 -9.93 15.25 -18.75 -0.29 -10.22 16 6 C 0.17 3.38 2.13 -70.02 -0.15 3.23 16 7 H 0.08 1.34 6.68 -51.93 -0.35 0.99 16 8 C 0.09 1.63 3.86 -84.22 -0.33 1.31 16 9 N -0.38 -8.03 10.17 -10.29 -0.10 -8.14 16 10 C 0.02 0.31 7.89 51.62 0.41 0.72 16 11 Br 0.05 0.73 34.13 -68.01 -2.32 -1.59 16 12 S 0.18 2.52 23.22 -107.50 -2.50 0.02 16 13 C -0.19 -3.03 6.59 -35.93 -0.24 -3.27 16 14 C -0.08 -0.93 9.81 36.01 0.35 -0.57 16 15 N -0.51 -11.66 4.26 -239.14 -1.02 -12.68 16 16 C 0.03 0.60 9.02 60.07 0.54 1.14 16 17 C 0.20 5.31 4.53 -4.98 -0.02 5.29 16 18 C -0.50 -14.39 8.38 -34.45 -0.29 -14.68 16 19 H 0.06 1.88 7.17 -52.49 -0.38 1.50 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 22 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 30 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.93 7.11 -51.93 -0.37 0.56 16 34 H 0.05 1.03 6.54 -51.93 -0.34 0.69 16 35 H 0.09 1.92 6.66 -51.93 -0.35 1.58 16 36 H 0.01 0.25 8.13 -51.93 -0.42 -0.18 16 37 H 0.03 0.96 6.42 -51.93 -0.33 0.63 16 38 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 363.84 15.07 5.48 5.48 Total: -1.00 -33.90 363.84 -9.46 -43.36 By element: Atomic # 1 Polarization: -0.21 SS G_CDS: -5.05 Total: -5.26 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 1.02 Total: 3.67 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.39 Total: -46.73 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.69 Total: -16.07 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -2.50 Total: 0.02 kcal Atomic # 35 Polarization: 0.73 SS G_CDS: -2.32 Total: -1.59 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.90 -9.46 -43.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857706316.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.777 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds