Wall clock time and date at job start Tue Mar 31 2020 05:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99601 * 2 1 4 4 H 1.48496 * 109.47026 * 269.99521 * 3 2 1 5 5 H 1.48503 * 109.47175 * 29.99651 * 3 2 1 6 6 H 1.48499 * 109.46882 * 149.99476 * 3 2 1 7 7 C 1.37870 * 120.00416 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99663 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00220 * 180.02562 * 7 2 1 10 10 O 1.42903 * 113.00988 * 311.63690 * 9 7 2 11 11 C 1.53937 * 113.73415 * 180.02562 * 9 7 2 12 12 N 1.47955 * 86.18157 * 221.91819 * 11 9 7 13 13 C 1.38393 * 111.00369 * 137.57832 * 12 11 9 14 14 N 1.32913 * 120.76775 * 0.02562 * 13 12 11 15 15 C 1.32040 * 121.18772 * 179.97438 * 14 13 12 16 16 N 1.31651 * 122.46864 * 359.97438 * 15 14 13 17 17 C 1.32891 * 120.63615 * 0.02562 * 16 15 14 18 18 C 1.40506 * 120.77699 * 179.72482 * 13 12 11 19 19 N 1.35477 * 134.68740 * 0.72786 * 18 13 12 20 20 C 1.30142 * 109.44200 * 179.52925 * 19 18 13 21 21 N 1.36324 * 109.97424 * 359.73246 * 20 19 18 22 22 C 1.46503 * 126.27419 * 179.97438 * 21 20 19 23 23 C 1.52989 * 109.47274 * 264.99904 * 22 21 20 24 24 H 1.09002 * 109.47637 * 305.00081 * 23 22 21 25 25 O 1.42904 * 109.47240 * 65.00376 * 23 22 21 26 26 C 1.53007 * 109.47342 * 185.00038 * 23 22 21 27 27 H 1.08997 * 109.82143 * 300.57717 * 26 23 22 28 28 C 1.54380 * 109.83248 * 179.58974 * 26 23 22 29 29 C 1.55311 * 102.25043 * 219.13335 * 28 26 23 30 30 C 1.54941 * 100.94266 * 34.13399 * 29 28 26 31 31 O 1.43239 * 109.82582 * 61.45480 * 26 23 22 32 32 C 1.47967 * 90.76348 * 24.68862 * 12 11 9 33 33 H 0.97000 * 120.00026 * 0.02562 * 1 2 3 34 34 H 0.96699 * 114.00020 * 48.36441 * 10 9 7 35 35 H 1.09005 * 113.75745 * 336.23541 * 11 9 7 36 36 H 1.08996 * 113.76539 * 107.60227 * 11 9 7 37 37 H 1.08007 * 118.77024 * 179.97438 * 15 14 13 38 38 H 1.07997 * 125.01311 * 179.77320 * 20 19 18 39 39 H 1.09000 * 109.47189 * 25.00528 * 22 21 20 40 40 H 1.09008 * 109.46947 * 144.99845 * 22 21 20 41 41 H 0.96700 * 113.99580 * 59.99839 * 25 23 22 42 42 H 1.08997 * 110.84762 * 337.32152 * 28 26 23 43 43 H 1.09000 * 110.84787 * 100.94153 * 28 26 23 44 44 H 1.09006 * 111.11953 * 276.21233 * 29 28 26 45 45 H 1.08995 * 111.12444 * 152.05785 * 29 28 26 46 46 H 1.09005 * 110.30905 * 204.64495 * 30 29 28 47 47 H 1.08994 * 110.39729 * 82.51403 * 30 29 28 48 48 H 1.08994 * 113.76237 * 220.99251 * 32 12 11 49 49 H 1.09006 * 113.85968 * 89.63644 * 32 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 8 4.0705 -0.3202 -0.9819 11 6 4.1312 -2.6030 0.0010 12 7 5.0967 -2.0709 0.9878 13 6 5.3135 -2.9791 2.0093 14 7 4.6907 -4.1533 2.0186 15 6 4.8917 -5.0262 2.9888 16 7 5.7104 -4.7910 3.9926 17 6 6.3772 -3.6441 4.0683 18 6 6.2017 -2.6840 3.0572 19 7 6.9818 -1.6229 3.3746 20 6 7.6159 -1.8679 4.4844 21 7 7.2762 -3.1025 4.9520 22 6 7.7798 -3.7356 6.1734 23 6 8.9662 -4.6378 5.8284 24 1 8.6687 -5.3514 5.0600 25 8 10.0471 -3.8387 5.3435 26 6 9.4131 -5.3941 7.0811 27 1 9.7024 -4.6855 7.8572 28 6 10.6040 -6.3153 6.7398 29 6 10.2875 -7.5861 7.5747 30 6 8.7397 -7.6045 7.5070 31 8 8.3457 -6.2239 7.5543 32 6 4.1306 -1.0290 1.4008 33 1 -0.4850 0.8400 -0.0004 34 1 3.6840 0.5662 -0.9856 35 1 3.4720 -3.3727 0.4027 36 1 4.5845 -2.8835 -0.9497 37 1 4.3647 -5.9684 2.9577 38 1 8.3084 -1.1925 4.9645 39 1 8.1005 -2.9662 6.8758 40 1 6.9883 -4.3332 6.6258 41 1 10.3641 -3.1801 5.9767 42 1 10.6233 -6.5458 5.6747 43 1 11.5451 -5.8666 7.0579 44 1 10.6346 -7.4775 8.6023 45 1 10.7117 -8.4766 7.1108 46 1 8.3301 -8.1442 8.3609 47 1 8.4056 -8.0616 6.5756 48 1 4.5834 -0.0519 1.5684 49 1 3.4705 -1.3365 2.2119 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888097463.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:24 Heat of formation + Delta-G solvation = 30.973646 kcal Electronic energy + Delta-G solvation = -34820.387883 eV Core-core repulsion = 30172.435545 eV Total energy + Delta-G solvation = -4647.952338 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.174 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.54413 -40.43888 -40.03337 -38.52563 -37.54660 -35.29004 -34.19047 -32.65892 -32.49807 -32.39352 -31.02227 -30.20506 -28.16568 -27.65967 -25.67346 -25.10406 -24.30083 -23.46097 -22.80375 -22.22987 -21.75210 -20.36955 -19.22562 -18.43651 -17.98427 -17.68269 -17.38608 -17.06458 -16.62016 -16.25056 -16.16998 -16.00161 -15.42062 -15.21719 -14.99721 -14.69254 -14.39612 -14.21939 -14.01782 -13.61851 -13.58376 -13.21802 -12.93335 -12.80111 -12.74791 -12.32970 -12.29972 -12.15463 -12.14788 -11.93973 -11.76337 -11.47898 -11.43519 -11.29426 -11.05251 -10.90416 -10.59428 -10.49496 -10.23386 -10.00882 -9.96036 -9.41880 -9.19169 -9.01610 -8.99077 -8.83779 -8.55065 -7.86983 -6.31878 -4.36306 0.80621 1.39284 2.15654 2.79035 3.08854 3.10454 3.16768 3.23697 3.77208 3.83162 3.87173 3.94763 4.03923 4.11548 4.13937 4.19696 4.31135 4.36591 4.44921 4.51252 4.56580 4.65907 4.80343 4.82093 4.83604 5.02324 5.10037 5.14203 5.16600 5.23527 5.31881 5.40099 5.43208 5.59496 5.69529 5.72116 5.81510 6.01711 6.21217 6.38656 6.39034 6.48029 6.63492 6.66904 6.77372 6.90796 7.00994 7.27939 7.33008 7.56870 7.81720 8.15080 8.35350 8.66516 8.73065 9.26581 10.80273 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.020854 B = 0.002082 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.370587 B =13447.294978 C =13940.259056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.078 3.922 3 Si 0.857 3.143 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.253 1.253 7 C -0.532 4.532 8 H 0.091 0.909 9 C 0.201 3.799 10 O -0.548 6.548 11 C 0.036 3.964 12 N -0.428 5.428 13 C 0.409 3.591 14 N -0.559 5.559 15 C 0.337 3.663 16 N -0.542 5.542 17 C 0.282 3.718 18 C -0.054 4.054 19 N -0.448 5.448 20 C 0.255 3.745 21 N -0.472 5.472 22 C 0.087 3.913 23 C 0.084 3.916 24 H 0.110 0.890 25 O -0.544 6.544 26 C 0.055 3.945 27 H 0.085 0.915 28 C -0.142 4.142 29 C -0.158 4.158 30 C 0.049 3.951 31 O -0.370 6.370 32 C 0.002 3.998 33 H 0.269 0.731 34 H 0.349 0.651 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.202 0.798 38 H 0.219 0.781 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.374 0.626 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.064 0.936 48 H 0.086 0.914 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.390 -11.565 19.341 31.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.127 4.127 3 Si 0.685 3.315 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.178 1.178 7 C -0.570 4.570 8 H 0.109 0.891 9 C 0.160 3.840 10 O -0.359 6.359 11 C -0.091 4.091 12 N -0.146 5.146 13 C 0.161 3.839 14 N -0.281 5.281 15 C 0.045 3.955 16 N -0.265 5.265 17 C 0.041 3.959 18 C -0.179 4.179 19 N -0.166 5.166 20 C -0.031 4.031 21 N -0.165 5.165 22 C -0.035 4.035 23 C 0.023 3.977 24 H 0.128 0.872 25 O -0.349 6.349 26 C -0.004 4.004 27 H 0.103 0.897 28 C -0.180 4.180 29 C -0.196 4.196 30 C -0.027 4.027 31 O -0.290 6.290 32 C -0.124 4.124 33 H 0.079 0.921 34 H 0.201 0.799 35 H 0.128 0.872 36 H 0.104 0.896 37 H 0.218 0.782 38 H 0.235 0.765 39 H 0.116 0.884 40 H 0.130 0.870 41 H 0.221 0.779 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.103 0.897 46 H 0.106 0.894 47 H 0.082 0.918 48 H 0.104 0.896 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 21.573 -12.216 18.167 30.735 hybrid contribution 0.192 1.345 1.562 2.070 sum 21.765 -10.871 19.729 31.322 Atomic orbital electron populations 1.69869 1.06057 1.27461 1.48091 1.25023 0.94943 0.99061 0.93682 0.87351 0.80655 0.84244 0.79227 1.19241 1.21206 1.17801 1.21324 0.87940 0.95589 1.52159 0.89149 1.20513 0.92547 0.87614 0.83322 1.86492 1.65676 1.25048 1.58653 1.24187 0.92083 0.97843 0.95001 1.65761 1.34686 1.07649 1.06498 1.20436 0.85773 0.90080 0.87564 1.68564 1.26003 1.04288 1.29290 1.24586 0.90087 0.97496 0.83303 1.67270 1.11922 1.19215 1.28065 1.18855 0.93721 0.92476 0.90866 1.19802 1.04464 0.94587 0.99024 1.70370 1.09045 1.25202 1.11934 1.25436 1.00020 0.85022 0.92604 1.44961 1.35307 1.15586 1.20672 1.22534 0.98883 0.97856 0.84242 1.22705 0.85687 0.92489 0.96822 0.87210 1.86752 1.51616 1.51889 1.44654 1.23382 0.87776 0.94036 0.95220 0.89719 1.23068 0.98245 0.95049 1.01649 1.23304 0.96297 0.98764 1.01192 1.23443 0.93871 0.83193 1.02206 1.88453 1.38198 1.16728 1.85580 1.25182 0.90664 0.94077 1.02459 0.92060 0.79933 0.87198 0.89572 0.78161 0.76515 0.88384 0.87018 0.77901 0.89896 0.89694 0.90269 0.89651 0.89361 0.91770 0.89611 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.72 13.96 55.43 0.77 -24.95 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.86 20.17 24.33 -169.99 -4.14 16.04 16 4 H -0.27 -6.04 7.05 56.52 0.40 -5.64 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.25 -5.74 5.29 56.52 0.30 -5.44 16 7 C -0.53 -14.69 9.20 -34.44 -0.32 -15.01 16 8 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 9 C 0.20 4.98 1.06 -90.84 -0.10 4.89 16 10 O -0.55 -13.80 13.31 -35.23 -0.47 -14.27 16 11 C 0.04 0.81 7.05 -2.77 -0.02 0.79 16 12 N -0.43 -9.53 6.26 -176.23 -1.10 -10.63 16 13 C 0.41 8.41 5.92 -154.65 -0.92 7.50 16 14 N -0.56 -10.53 8.36 -13.61 -0.11 -10.65 16 15 C 0.34 5.30 12.25 -92.07 -1.13 4.17 16 16 N -0.54 -8.70 10.47 -13.90 -0.15 -8.85 16 17 C 0.28 4.65 8.05 -155.80 -1.25 3.40 16 18 C -0.05 -1.03 7.19 -84.54 -0.61 -1.63 16 19 N -0.45 -7.88 11.28 -11.85 -0.13 -8.02 16 20 C 0.26 3.15 12.51 -89.49 -1.12 2.03 16 21 N -0.47 -5.82 2.74 -117.62 -0.32 -6.14 16 22 C 0.09 0.71 5.73 -4.05 -0.02 0.69 16 23 C 0.08 0.64 2.85 -26.73 -0.08 0.56 16 24 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 25 O -0.54 -3.88 12.95 -35.23 -0.46 -4.33 16 26 C 0.05 0.32 3.27 -26.00 -0.09 0.24 16 27 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 28 C -0.14 -0.73 6.23 -24.78 -0.15 -0.88 16 29 C -0.16 -0.70 7.16 -24.48 -0.18 -0.87 16 30 C 0.05 0.30 7.78 38.18 0.30 0.59 16 31 O -0.37 -2.96 10.34 -35.23 -0.36 -3.32 16 32 C 0.00 0.05 6.48 -2.76 -0.02 0.03 16 33 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.35 8.40 3.31 45.56 0.15 8.55 16 35 H 0.11 2.43 6.66 -51.93 -0.35 2.08 16 36 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 37 H 0.20 2.30 8.06 -52.48 -0.42 1.88 16 38 H 0.22 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.10 0.44 8.13 -51.93 -0.42 0.02 16 40 H 0.11 1.07 7.60 -51.92 -0.39 0.68 16 41 H 0.37 0.93 9.05 45.56 0.41 1.34 16 42 H 0.08 0.53 7.85 -51.93 -0.41 0.12 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.09 1.99 6.98 -51.93 -0.36 1.63 16 49 H 0.08 1.83 7.86 -51.93 -0.41 1.42 16 LS Contribution 396.71 15.07 5.98 5.98 Total: -1.00 -36.20 396.71 -11.95 -48.15 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -5.67 Total: 12.44 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: -5.79 Total: 8.55 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -1.05 Total: -69.23 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -1.29 Total: -21.93 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.14 Total: 16.04 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.20 -11.95 -48.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888097463.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.125 kcal (2) G-P(sol) polarization free energy of solvation -36.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds