Wall clock time and date at job start Tue Mar 31 2020 05:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00133 * 2 1 4 4 H 1.48503 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47082 * 299.99983 * 3 2 1 6 6 H 1.48504 * 109.47324 * 60.00221 * 3 2 1 7 7 C 1.37881 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00051 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99858 * 0.02562 * 7 2 1 10 10 O 1.42903 * 112.93280 * 309.66588 * 9 7 2 11 11 C 1.53929 * 113.83123 * 81.32113 * 9 7 2 12 12 N 1.47965 * 86.17840 * 138.09067 * 11 9 7 13 13 C 1.38381 * 111.00218 * 222.41693 * 12 11 9 14 14 N 1.32908 * 120.77355 * 99.08080 * 13 12 11 15 15 C 1.32046 * 121.19427 * 179.75796 * 14 13 12 16 16 N 1.31648 * 122.46346 * 0.53843 * 15 14 13 17 17 C 1.32890 * 120.63718 * 359.73842 * 16 15 14 18 18 C 1.40510 * 120.77432 * 279.36154 * 13 12 11 19 19 N 1.35472 * 134.69563 * 359.97438 * 18 13 12 20 20 C 1.30139 * 109.44428 * 179.97438 * 19 18 13 21 21 N 1.36318 * 109.97804 * 0.02562 * 20 19 18 22 22 C 1.46504 * 126.27715 * 180.02562 * 21 20 19 23 23 C 1.52999 * 109.46741 * 264.95634 * 22 21 20 24 24 H 1.08997 * 109.47342 * 54.99878 * 23 22 21 25 25 O 1.42902 * 109.47406 * 295.00177 * 23 22 21 26 26 C 1.53004 * 109.47061 * 175.00224 * 23 22 21 27 27 H 1.08996 * 110.27314 * 60.63710 * 26 23 22 28 28 C 1.54953 * 110.30694 * 182.83311 * 26 23 22 29 29 C 1.55307 * 100.93673 * 155.35807 * 28 26 23 30 30 C 1.54385 * 102.25462 * 325.86688 * 29 28 26 31 31 O 1.43234 * 107.58844 * 21.35679 * 30 29 28 32 32 C 1.47957 * 90.76318 * 335.31583 * 12 11 9 33 33 H 0.96998 * 120.00013 * 359.97438 * 1 2 3 34 34 H 0.96700 * 114.00311 * 48.43698 * 10 9 7 35 35 H 1.09001 * 113.76367 * 252.40742 * 11 9 7 36 36 H 1.08997 * 113.75795 * 23.78255 * 11 9 7 37 37 H 1.08000 * 118.76617 * 180.27284 * 15 14 13 38 38 H 1.08000 * 125.00932 * 180.02562 * 20 19 18 39 39 H 1.08996 * 109.47147 * 24.95432 * 22 21 20 40 40 H 1.09000 * 109.47034 * 144.96044 * 22 21 20 41 41 H 0.96702 * 114.00016 * 300.00570 * 25 23 22 42 42 H 1.08993 * 111.12418 * 273.27637 * 28 26 23 43 43 H 1.08996 * 111.12713 * 37.44493 * 28 26 23 44 44 H 1.09000 * 110.84971 * 207.67254 * 29 28 26 45 45 H 1.08999 * 110.84640 * 84.05536 * 29 28 26 46 46 H 1.09006 * 109.82742 * 261.84123 * 30 29 28 47 47 H 1.09003 * 109.82603 * 140.87333 * 30 29 28 48 48 H 1.09005 * 113.75470 * 270.36692 * 32 12 11 49 49 H 1.08998 * 113.76285 * 139.01004 * 32 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 8 0.2448 -2.5621 1.0110 11 6 0.7566 -2.9306 -1.3941 12 7 1.1879 -4.2945 -1.0156 13 6 1.8348 -4.9198 -2.0671 14 7 3.1622 -4.9618 -2.1204 15 6 3.7880 -5.5603 -3.1173 16 7 3.1449 -6.1353 -4.1117 17 6 1.8165 -6.1392 -4.1470 18 6 1.1038 -5.5199 -3.1061 19 7 -0.2143 -5.6658 -3.3830 20 6 -0.3526 -6.3186 -4.5003 21 7 0.8717 -6.6333 -5.0105 22 6 1.1311 -7.3643 -6.2534 23 6 1.3299 -8.8486 -5.9400 24 1 0.4674 -9.2221 -5.3880 25 8 2.5092 -9.0150 -5.1504 26 6 1.4766 -9.6305 -7.2470 27 1 2.3429 -9.2748 -7.8047 28 6 1.6079 -11.1465 -6.9547 29 6 1.0993 -11.7496 -8.2925 30 6 0.0154 -10.7358 -8.7179 31 8 0.2861 -9.5032 -8.0405 32 6 2.1609 -3.7399 -0.0488 33 1 -0.4850 0.8400 0.0004 34 1 -0.3292 -1.7845 1.0440 35 1 -0.3206 -2.8320 -1.5277 36 1 1.3295 -2.5013 -2.2160 37 1 4.8679 -5.5749 -3.1191 38 1 -1.2980 -6.5735 -4.9561 39 1 0.2834 -7.2458 -6.9282 40 1 2.0301 -6.9692 -6.7264 41 1 3.3175 -8.7033 -5.5801 42 1 2.6459 -11.4223 -6.7689 43 1 0.9696 -11.4429 -6.1224 44 1 0.6659 -12.7369 -8.1330 45 1 1.9017 -11.7915 -9.0290 46 1 -0.9694 -11.1061 -8.4327 47 1 0.0560 -10.5819 -9.7962 48 1 3.1445 -3.5472 -0.4773 49 1 2.2058 -4.2877 0.8924 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888097465.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:28 Heat of formation + Delta-G solvation = 14.130951 kcal Electronic energy + Delta-G solvation = -34635.099644 eV Core-core repulsion = 29986.416953 eV Total energy + Delta-G solvation = -4648.682692 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.174 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.43022 -40.32847 -39.83565 -38.27994 -37.47207 -34.78346 -33.95732 -32.65408 -32.36849 -32.05151 -30.98097 -30.04194 -28.08418 -27.36594 -25.32664 -25.02595 -24.20455 -23.37220 -22.70561 -22.19648 -21.81513 -20.24040 -18.83067 -18.37494 -17.84443 -17.60145 -17.27902 -17.01219 -16.54329 -15.97366 -15.82806 -15.52142 -15.22676 -15.00844 -14.84380 -14.47058 -14.40768 -14.09767 -13.88417 -13.81560 -13.76144 -13.03615 -12.75184 -12.70967 -12.31521 -12.23995 -12.10071 -11.97740 -11.89285 -11.74756 -11.46261 -11.39144 -11.37138 -11.10278 -10.95909 -10.81256 -10.52104 -10.39218 -10.12694 -10.09284 -10.03158 -9.41340 -9.08486 -8.86628 -8.81247 -8.62052 -8.23055 -7.69278 -6.25843 -4.35430 0.91807 1.52494 2.24726 2.87864 3.05972 3.20891 3.29669 3.34382 3.78768 3.93946 4.00251 4.04052 4.15469 4.18889 4.26503 4.28282 4.36792 4.48339 4.49856 4.56240 4.62140 4.75053 4.79636 4.93032 4.99203 5.01773 5.12366 5.16208 5.21878 5.24684 5.36235 5.41828 5.58215 5.78569 5.84749 5.99045 6.12356 6.29806 6.36540 6.41688 6.55328 6.76904 6.82046 6.90597 6.97154 7.19928 7.35336 7.42851 7.75632 7.76691 7.97413 7.98691 8.46613 8.67928 9.34491 9.61342 10.80339 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.022147 B = 0.001916 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.002711 B =14612.986934 C =14855.679159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.533 4.533 8 H 0.071 0.929 9 C 0.244 3.756 10 O -0.569 6.569 11 C 0.021 3.979 12 N -0.429 5.429 13 C 0.412 3.588 14 N -0.564 5.564 15 C 0.335 3.665 16 N -0.542 5.542 17 C 0.293 3.707 18 C -0.059 4.059 19 N -0.443 5.443 20 C 0.243 3.757 21 N -0.474 5.474 22 C 0.087 3.913 23 C 0.097 3.903 24 H 0.109 0.891 25 O -0.537 6.537 26 C 0.053 3.947 27 H 0.077 0.923 28 C -0.142 4.142 29 C -0.158 4.158 30 C 0.051 3.949 31 O -0.377 6.377 32 C 0.021 3.979 33 H 0.271 0.729 34 H 0.389 0.611 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.199 0.801 38 H 0.220 0.780 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.379 0.621 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.102 0.898 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.508 -20.888 -19.719 28.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.089 0.911 9 C 0.202 3.798 10 O -0.380 6.380 11 C -0.105 4.105 12 N -0.147 5.147 13 C 0.165 3.835 14 N -0.287 5.287 15 C 0.044 3.956 16 N -0.265 5.265 17 C 0.052 3.948 18 C -0.184 4.184 19 N -0.160 5.160 20 C -0.043 4.043 21 N -0.168 5.168 22 C -0.036 4.036 23 C 0.036 3.964 24 H 0.127 0.873 25 O -0.342 6.342 26 C -0.006 4.006 27 H 0.095 0.905 28 C -0.180 4.180 29 C -0.196 4.196 30 C -0.025 4.025 31 O -0.296 6.296 32 C -0.106 4.106 33 H 0.081 0.919 34 H 0.244 0.756 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.215 0.785 38 H 0.236 0.764 39 H 0.130 0.870 40 H 0.113 0.887 41 H 0.228 0.772 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.120 0.880 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.883 -21.632 -18.598 28.589 hybrid contribution 0.824 1.316 -1.692 2.296 sum 2.707 -20.316 -20.290 28.840 Atomic orbital electron populations 1.69436 1.06071 1.27810 1.50353 1.25093 0.95026 0.99765 0.93379 0.86337 0.80180 0.82590 0.77745 1.19451 1.20848 1.20635 1.21628 0.93916 0.90164 1.51454 0.91128 1.19814 0.85310 0.91524 0.83119 1.86070 1.48076 1.48125 1.55722 1.24851 1.01698 0.81270 1.02644 1.65750 1.25092 1.17587 1.06283 1.20515 0.86900 0.88355 0.87728 1.68567 1.08269 1.23318 1.28570 1.24520 1.00151 0.87475 0.83454 1.67167 1.05318 1.24703 1.29281 1.18762 0.89376 0.96007 0.90686 1.19818 0.91466 1.08225 0.98877 1.70372 1.16722 1.16279 1.12628 1.25523 0.88859 0.97893 0.92022 1.44943 1.05386 1.46384 1.20047 1.22539 1.05041 0.92019 0.83990 1.22362 0.90345 0.92559 0.91150 0.87280 1.86717 1.16835 1.85859 1.44773 1.23676 0.88958 0.96250 0.91689 0.90543 1.23190 1.03302 0.93605 0.97859 1.23161 0.98994 0.99946 0.97470 1.23154 0.98640 0.83795 0.96948 1.88381 1.44024 1.34235 1.62993 1.24303 0.96196 0.95229 0.94854 0.91898 0.75624 0.89672 0.91728 0.78467 0.76405 0.87000 0.88704 0.77250 0.89417 0.89932 0.89756 0.90420 0.91008 0.91157 0.87984 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.12 11.19 55.43 0.62 -23.49 16 2 C 0.07 1.84 5.39 -17.82 -0.10 1.75 16 3 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.53 -14.35 8.62 -34.44 -0.30 -14.64 16 8 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.24 6.34 1.41 -90.84 -0.13 6.21 16 10 O -0.57 -15.57 13.50 -35.23 -0.48 -16.05 16 11 C 0.02 0.52 7.29 -2.77 -0.02 0.50 16 12 N -0.43 -10.06 6.26 -176.25 -1.10 -11.17 16 13 C 0.41 8.81 5.92 -154.67 -0.92 7.89 16 14 N -0.56 -10.88 8.36 -13.61 -0.11 -10.99 16 15 C 0.34 5.28 12.25 -92.06 -1.13 4.15 16 16 N -0.54 -8.43 10.47 -13.90 -0.15 -8.58 16 17 C 0.29 4.87 7.66 -155.80 -1.19 3.68 16 18 C -0.06 -1.17 7.19 -84.54 -0.61 -1.77 16 19 N -0.44 -8.22 11.28 -11.85 -0.13 -8.36 16 20 C 0.24 3.24 12.51 -89.50 -1.12 2.12 16 21 N -0.47 -6.08 2.76 -117.62 -0.32 -6.41 16 22 C 0.09 0.74 5.75 -4.04 -0.02 0.72 16 23 C 0.10 0.76 2.98 -26.73 -0.08 0.68 16 24 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 25 O -0.54 -5.18 12.66 -35.23 -0.45 -5.62 16 26 C 0.05 0.32 3.17 -25.70 -0.08 0.24 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 28 C -0.14 -0.76 6.33 -24.48 -0.16 -0.91 16 29 C -0.16 -0.64 7.02 -24.78 -0.17 -0.82 16 30 C 0.05 0.26 7.79 37.88 0.30 0.55 16 31 O -0.38 -2.67 10.39 -35.23 -0.37 -3.04 16 32 C 0.02 0.50 7.06 -2.77 -0.02 0.48 16 33 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.39 10.74 6.56 45.56 0.30 11.03 16 35 H 0.08 2.19 8.14 -51.93 -0.42 1.77 16 36 H 0.06 1.61 7.86 -51.93 -0.41 1.21 16 37 H 0.20 2.24 8.06 -52.49 -0.42 1.81 16 38 H 0.22 1.77 8.06 -52.49 -0.42 1.34 16 39 H 0.11 0.76 7.61 -51.93 -0.40 0.37 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.38 2.73 9.05 45.56 0.41 3.15 16 42 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.51 8.06 -51.93 -0.42 0.09 16 44 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 46 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 48 H 0.10 2.31 6.66 -51.93 -0.35 1.96 16 49 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 405.50 15.07 6.11 6.11 Total: -1.00 -33.72 405.50 -12.62 -46.33 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -5.47 Total: 14.91 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: -5.74 Total: 10.83 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -1.20 Total: -68.99 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -1.29 Total: -24.71 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.72 -12.62 -46.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888097465.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.464 kcal (2) G-P(sol) polarization free energy of solvation -33.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds