Wall clock time and date at job start Tue Mar 31 2020 05:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00133 * 2 1 4 4 H 1.48503 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47082 * 299.99983 * 3 2 1 6 6 H 1.48504 * 109.47324 * 60.00221 * 3 2 1 7 7 C 1.37881 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00051 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99858 * 0.02562 * 7 2 1 10 10 O 1.42903 * 112.93280 * 309.66588 * 9 7 2 11 11 C 1.53929 * 113.83123 * 81.32113 * 9 7 2 12 12 N 1.47965 * 86.17840 * 138.09067 * 11 9 7 13 13 C 1.38381 * 111.00218 * 222.41693 * 12 11 9 14 14 N 1.32908 * 120.77355 * 99.08080 * 13 12 11 15 15 C 1.32046 * 121.19427 * 179.75796 * 14 13 12 16 16 N 1.31648 * 122.46346 * 0.53843 * 15 14 13 17 17 C 1.32890 * 120.63718 * 359.73842 * 16 15 14 18 18 C 1.40510 * 120.77432 * 279.36154 * 13 12 11 19 19 N 1.35472 * 134.69563 * 359.97438 * 18 13 12 20 20 C 1.30139 * 109.44428 * 179.97438 * 19 18 13 21 21 N 1.36318 * 109.97804 * 0.02562 * 20 19 18 22 22 C 1.46504 * 126.27715 * 180.02562 * 21 20 19 23 23 C 1.52999 * 109.46741 * 264.95634 * 22 21 20 24 24 H 1.08997 * 109.47342 * 54.99878 * 23 22 21 25 25 O 1.42902 * 109.47406 * 295.00177 * 23 22 21 26 26 C 1.53004 * 109.47061 * 175.00224 * 23 22 21 27 27 H 1.08996 * 110.27314 * 60.63710 * 26 23 22 28 28 C 1.54953 * 110.30694 * 182.83311 * 26 23 22 29 29 C 1.55307 * 100.93673 * 155.35807 * 28 26 23 30 30 C 1.54385 * 102.25462 * 325.86688 * 29 28 26 31 31 O 1.43234 * 107.58844 * 21.35679 * 30 29 28 32 32 C 1.47957 * 90.76318 * 335.31583 * 12 11 9 33 33 H 0.96998 * 120.00013 * 359.97438 * 1 2 3 34 34 H 0.96700 * 114.00311 * 48.43698 * 10 9 7 35 35 H 1.09001 * 113.76367 * 252.40742 * 11 9 7 36 36 H 1.08997 * 113.75795 * 23.78255 * 11 9 7 37 37 H 1.08000 * 118.76617 * 180.27284 * 15 14 13 38 38 H 1.08000 * 125.00932 * 180.02562 * 20 19 18 39 39 H 1.08996 * 109.47147 * 24.95432 * 22 21 20 40 40 H 1.09000 * 109.47034 * 144.96044 * 22 21 20 41 41 H 0.96702 * 114.00016 * 300.00570 * 25 23 22 42 42 H 1.08993 * 111.12418 * 273.27637 * 28 26 23 43 43 H 1.08996 * 111.12713 * 37.44493 * 28 26 23 44 44 H 1.09000 * 110.84971 * 207.67254 * 29 28 26 45 45 H 1.08999 * 110.84640 * 84.05536 * 29 28 26 46 46 H 1.09006 * 109.82742 * 261.84123 * 30 29 28 47 47 H 1.09003 * 109.82603 * 140.87333 * 30 29 28 48 48 H 1.09005 * 113.75470 * 270.36692 * 32 12 11 49 49 H 1.08998 * 113.76285 * 139.01004 * 32 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 8 0.2448 -2.5621 1.0110 11 6 0.7566 -2.9306 -1.3941 12 7 1.1879 -4.2945 -1.0156 13 6 1.8348 -4.9198 -2.0671 14 7 3.1622 -4.9618 -2.1204 15 6 3.7880 -5.5603 -3.1173 16 7 3.1449 -6.1353 -4.1117 17 6 1.8165 -6.1392 -4.1470 18 6 1.1038 -5.5199 -3.1061 19 7 -0.2143 -5.6658 -3.3830 20 6 -0.3526 -6.3186 -4.5003 21 7 0.8717 -6.6333 -5.0105 22 6 1.1311 -7.3643 -6.2534 23 6 1.3299 -8.8486 -5.9400 24 1 0.4674 -9.2221 -5.3880 25 8 2.5092 -9.0150 -5.1504 26 6 1.4766 -9.6305 -7.2470 27 1 2.3429 -9.2748 -7.8047 28 6 1.6079 -11.1465 -6.9547 29 6 1.0993 -11.7496 -8.2925 30 6 0.0154 -10.7358 -8.7179 31 8 0.2861 -9.5032 -8.0405 32 6 2.1609 -3.7399 -0.0488 33 1 -0.4850 0.8400 0.0004 34 1 -0.3292 -1.7845 1.0440 35 1 -0.3206 -2.8320 -1.5277 36 1 1.3295 -2.5013 -2.2160 37 1 4.8679 -5.5749 -3.1191 38 1 -1.2980 -6.5735 -4.9561 39 1 0.2834 -7.2458 -6.9282 40 1 2.0301 -6.9692 -6.7264 41 1 3.3175 -8.7033 -5.5801 42 1 2.6459 -11.4223 -6.7689 43 1 0.9696 -11.4429 -6.1224 44 1 0.6659 -12.7369 -8.1330 45 1 1.9017 -11.7915 -9.0290 46 1 -0.9694 -11.1061 -8.4327 47 1 0.0560 -10.5819 -9.7962 48 1 3.1445 -3.5472 -0.4773 49 1 2.2058 -4.2877 0.8924 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888097465.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:26 Heat of formation + Delta-G solvation = -11.646542 kcal Electronic energy + Delta-G solvation = -34636.217440 eV Core-core repulsion = 29986.416953 eV Total energy + Delta-G solvation = -4649.800488 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.174 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.67675 -41.56833 -40.71227 -39.73873 -38.16200 -36.58851 -35.12981 -34.16209 -33.73950 -33.04695 -31.65531 -31.47982 -29.28598 -28.64234 -27.16417 -26.75410 -25.03142 -24.59442 -24.11979 -22.60244 -22.34901 -21.50851 -20.70351 -19.63093 -19.31679 -18.87646 -18.16869 -17.88337 -17.51535 -17.36768 -17.10951 -16.56824 -16.36505 -16.21971 -15.97518 -15.82363 -15.71227 -15.48462 -15.07681 -14.81925 -14.56598 -14.22981 -14.17067 -14.00300 -13.59240 -13.43024 -13.32998 -12.89769 -12.86271 -12.76953 -12.70929 -12.64790 -12.54836 -12.34133 -12.26148 -12.23327 -12.09066 -11.73662 -11.48932 -11.37819 -11.26101 -10.70552 -10.52731 -10.46927 -10.31931 -10.19264 -10.04849 -9.26125 -8.26671 -6.44824 -0.43736 0.16812 1.20269 1.41649 1.44427 1.56674 1.70553 2.36406 2.53301 2.60972 2.78235 2.93079 2.96926 3.12152 3.28309 3.38915 3.43280 3.55589 3.61321 3.77792 3.85334 3.96841 3.99961 4.05349 4.11105 4.17120 4.21813 4.32210 4.38145 4.41003 4.46095 4.58995 4.69432 4.74940 4.82727 4.89374 4.92054 4.95182 5.01124 5.03642 5.06622 5.22139 5.34522 5.39286 5.71535 5.71902 5.93121 5.94846 6.08551 6.14072 6.60994 6.64898 6.68002 7.11028 7.27876 7.46111 8.79174 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.022147 B = 0.001916 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.002711 B =14612.986934 C =14855.679159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.026 3.974 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.556 4.556 8 H 0.069 0.931 9 C 0.226 3.774 10 O -0.580 6.580 11 C 0.038 3.962 12 N -0.439 5.439 13 C 0.375 3.625 14 N -0.576 5.576 15 C 0.326 3.674 16 N -0.521 5.521 17 C 0.290 3.710 18 C -0.085 4.085 19 N -0.503 5.503 20 C 0.273 3.727 21 N -0.465 5.465 22 C 0.085 3.915 23 C 0.103 3.897 24 H 0.097 0.903 25 O -0.557 6.557 26 C 0.060 3.940 27 H 0.090 0.910 28 C -0.144 4.144 29 C -0.152 4.152 30 C 0.044 3.956 31 O -0.392 6.392 32 C 0.034 3.966 33 H 0.275 0.725 34 H 0.384 0.616 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.242 0.758 38 H 0.271 0.729 39 H 0.137 0.863 40 H 0.104 0.896 41 H 0.389 0.611 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.107 0.893 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.459 -22.078 -22.510 31.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.174 4.174 3 Si 0.795 3.205 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.594 4.594 8 H 0.087 0.913 9 C 0.185 3.815 10 O -0.391 6.391 11 C -0.089 4.089 12 N -0.157 5.157 13 C 0.129 3.871 14 N -0.299 5.299 15 C 0.036 3.964 16 N -0.242 5.242 17 C 0.046 3.954 18 C -0.209 4.209 19 N -0.221 5.221 20 C -0.013 4.013 21 N -0.157 5.157 22 C -0.036 4.036 23 C 0.043 3.957 24 H 0.115 0.885 25 O -0.364 6.364 26 C 0.002 3.998 27 H 0.108 0.892 28 C -0.181 4.181 29 C -0.190 4.190 30 C -0.032 4.032 31 O -0.312 6.312 32 C -0.094 4.094 33 H 0.085 0.915 34 H 0.238 0.762 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.258 0.742 38 H 0.286 0.714 39 H 0.154 0.846 40 H 0.122 0.878 41 H 0.239 0.761 42 H 0.111 0.889 43 H 0.089 0.911 44 H 0.111 0.889 45 H 0.105 0.895 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.125 0.875 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.866 -22.870 -21.430 31.472 hybrid contribution 0.480 1.517 -1.005 1.882 sum 3.346 -21.353 -22.435 31.153 Atomic orbital electron populations 1.69515 1.07198 1.28784 1.50264 1.25866 0.95879 1.02885 0.92744 0.85312 0.78972 0.78352 0.77836 1.19018 1.20392 1.20058 1.21820 0.93976 0.91106 1.52496 0.91312 1.20082 0.85568 0.92538 0.83345 1.86051 1.48490 1.47932 1.56578 1.24403 0.99882 0.83103 1.01476 1.65677 1.25755 1.16843 1.07422 1.20487 0.88016 0.90152 0.88469 1.68484 1.07602 1.23866 1.29913 1.25394 1.01778 0.86722 0.82535 1.67310 1.04662 1.23572 1.28675 1.19034 0.89828 0.95771 0.90776 1.20017 0.92671 1.08791 0.99427 1.70340 1.16561 1.19574 1.15651 1.26568 0.90508 0.94152 0.90056 1.45259 1.04313 1.45653 1.20514 1.22898 1.06589 0.91831 0.82251 1.22281 0.89461 0.92172 0.91816 0.88532 1.86691 1.17749 1.86104 1.45858 1.23597 0.89199 0.96295 0.90735 0.89183 1.23185 1.03419 0.93323 0.98197 1.23154 0.98975 1.00029 0.96813 1.23303 0.99104 0.83405 0.97358 1.88349 1.44377 1.35303 1.63214 1.24136 0.96102 0.94045 0.95082 0.91514 0.76203 0.91794 0.92906 0.74229 0.71384 0.84554 0.87815 0.76137 0.88949 0.91101 0.88901 0.89469 0.90768 0.90243 0.87510 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.39 11.19 21.45 0.24 -50.15 16 2 C 0.03 1.42 5.39 84.65 0.46 1.87 16 3 Si 0.97 42.34 29.54 68.60 2.03 44.36 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.56 -30.67 8.62 25.60 0.22 -30.45 16 8 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 9 C 0.23 12.22 1.41 -10.90 -0.02 12.20 16 10 O -0.58 -33.13 13.50 -148.98 -2.01 -35.14 16 11 C 0.04 1.98 7.29 86.40 0.63 2.61 16 12 N -0.44 -21.46 6.26 -714.76 -4.48 -25.93 16 13 C 0.37 16.46 5.92 133.46 0.79 17.25 16 14 N -0.58 -22.32 8.36 -196.97 -1.65 -23.96 16 15 C 0.33 9.84 12.25 180.85 2.22 12.06 16 16 N -0.52 -15.31 10.47 -197.88 -2.07 -17.38 16 17 C 0.29 9.29 7.66 133.86 1.03 10.32 16 18 C -0.08 -3.40 7.19 39.69 0.29 -3.12 16 19 N -0.50 -18.68 11.28 -191.39 -2.16 -20.84 16 20 C 0.27 6.72 12.51 179.96 2.25 8.97 16 21 N -0.46 -10.89 2.76 -526.03 -1.45 -12.34 16 22 C 0.08 1.18 5.75 86.38 0.50 1.68 16 23 C 0.10 1.39 2.98 30.60 0.09 1.48 16 24 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 25 O -0.56 -9.65 12.66 -148.98 -1.89 -11.54 16 26 C 0.06 0.57 3.17 31.26 0.10 0.67 16 27 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 28 C -0.14 -1.23 6.33 32.05 0.20 -1.03 16 29 C -0.15 -0.86 7.02 31.86 0.22 -0.63 16 30 C 0.04 0.34 7.79 72.45 0.56 0.90 16 31 O -0.39 -4.47 10.39 -148.98 -1.55 -6.02 16 32 C 0.03 1.64 7.06 86.40 0.61 2.25 16 33 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 34 H 0.38 22.18 6.56 -74.06 -0.49 21.69 16 35 H 0.06 3.51 8.14 -2.39 -0.02 3.49 16 36 H 0.05 2.79 7.86 -2.39 -0.02 2.77 16 37 H 0.24 4.80 8.06 -2.91 -0.02 4.78 16 38 H 0.27 3.32 8.06 -2.91 -0.02 3.30 16 39 H 0.14 1.31 7.61 -2.39 -0.02 1.29 16 40 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.39 4.71 9.05 -74.06 -0.67 4.04 16 42 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 0.78 8.06 -2.39 -0.02 0.76 16 44 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 45 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 47 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.11 4.99 6.66 -2.38 -0.02 4.97 16 49 H 0.08 3.73 8.14 -2.39 -0.02 3.71 16 Total: -1.00 -76.07 405.50 -4.98 -81.05 By element: Atomic # 1 Polarization: 41.01 SS G_CDS: -0.14 Total: 40.87 kcal Atomic # 6 Polarization: 26.89 SS G_CDS: 10.15 Total: 37.04 kcal Atomic # 7 Polarization: -139.04 SS G_CDS: -11.57 Total: -150.61 kcal Atomic # 8 Polarization: -47.26 SS G_CDS: -5.44 Total: -52.70 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -76.07 -4.98 -81.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888097465.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.402 kcal (2) G-P(sol) polarization free energy of solvation -76.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds