Wall clock time and date at job start Tue Mar 31 2020 05:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99937 * 2 1 4 4 H 1.48500 * 109.47155 * 240.00070 * 3 2 1 5 5 H 1.48501 * 109.47411 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46812 * 120.00344 * 3 2 1 7 7 C 1.37879 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00035 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99650 * 0.02562 * 7 2 1 10 10 O 1.42903 * 113.38301 * 313.07353 * 9 7 2 11 11 C 1.53510 * 114.16987 * 179.97438 * 9 7 2 12 12 N 1.47478 * 87.93344 * 220.32559 * 11 9 7 13 13 C 1.38392 * 110.99894 * 138.70101 * 12 11 9 14 14 N 1.32906 * 120.77617 * 359.97438 * 13 12 11 15 15 C 1.32041 * 121.19033 * 180.02562 * 14 13 12 16 16 N 1.31645 * 122.46978 * 359.96589 * 15 14 13 17 17 C 1.32890 * 120.63619 * 0.02562 * 16 15 14 18 18 C 1.40514 * 120.77167 * 179.97438 * 13 12 11 19 19 N 1.35468 * 134.68729 * 359.94173 * 18 13 12 20 20 C 1.30144 * 109.44107 * 180.02562 * 19 18 13 21 21 N 1.36321 * 109.97378 * 0.02562 * 20 19 18 22 22 C 1.46502 * 126.27399 * 179.97438 * 21 20 19 23 23 C 1.53001 * 109.47075 * 265.02321 * 22 21 20 24 24 H 1.09000 * 109.46740 * 55.00147 * 23 22 21 25 25 O 1.42899 * 109.47110 * 295.00073 * 23 22 21 26 26 C 1.52996 * 109.47038 * 175.00199 * 23 22 21 27 27 H 1.09001 * 110.33572 * 297.24830 * 26 23 22 28 28 C 1.54479 * 110.37272 * 175.00121 * 26 23 22 29 29 C 1.54514 * 104.06288 * 217.18799 * 28 26 23 30 30 C 1.54484 * 104.06250 * 0.02562 * 29 28 26 31 31 O 1.44425 * 104.80367 * 23.97587 * 30 29 28 32 32 C 1.47481 * 87.83517 * 27.00927 * 12 11 9 33 33 H 0.97004 * 119.99738 * 359.97438 * 1 2 3 34 34 H 0.96703 * 113.99654 * 46.92085 * 10 9 7 35 35 H 1.09002 * 113.47674 * 105.55724 * 11 9 7 36 36 H 1.09000 * 113.47679 * 335.09517 * 11 9 7 37 37 H 1.08002 * 118.76454 * 179.97438 * 15 14 13 38 38 H 1.07999 * 125.01049 * 179.73375 * 20 19 18 39 39 H 1.08996 * 109.47054 * 25.02346 * 22 21 20 40 40 H 1.08998 * 109.46681 * 145.02173 * 22 21 20 41 41 H 0.96702 * 114.00303 * 300.00303 * 25 23 22 42 42 H 1.08999 * 110.51253 * 335.83051 * 28 26 23 43 43 H 1.09001 * 110.51379 * 98.40591 * 28 26 23 44 44 H 1.09003 * 110.51095 * 118.64443 * 29 28 26 45 45 H 1.08999 * 110.50959 * 241.35341 * 29 28 26 46 46 H 1.08997 * 110.37333 * 142.80900 * 30 29 28 47 47 H 1.09001 * 110.36694 * 265.03540 * 30 29 28 48 48 H 1.09004 * 113.47537 * 87.75350 * 32 12 11 49 49 H 1.08997 * 113.47618 * 218.22135 * 32 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 8 0.1913 -2.5430 0.9560 11 6 2.1496 -3.7437 -0.0028 12 7 1.2075 -4.3575 -0.9571 13 6 1.8842 -5.0423 -1.9512 14 7 3.2125 -5.0863 -1.9633 15 6 3.8665 -5.7369 -2.9081 16 7 3.2521 -6.3739 -3.8826 17 6 1.9251 -6.3856 -3.9531 18 6 1.1830 -5.7074 -2.9712 19 7 -0.1267 -5.8758 -3.2733 20 6 -0.2333 -6.5962 -4.3520 21 7 1.0052 -6.9358 -4.8093 22 6 1.2997 -7.7409 -5.9974 23 6 1.4933 -9.2023 -5.5879 24 1 0.6170 -9.5445 -5.0374 25 8 2.6513 -9.3151 -4.7582 26 6 1.6772 -10.0626 -6.8397 27 1 0.7816 -10.0253 -7.4599 28 6 1.9989 -11.5216 -6.4471 29 6 3.0227 -11.9794 -7.5100 30 6 3.1989 -10.7425 -8.4187 31 8 2.8301 -9.6195 -7.5889 32 6 0.8554 -2.9953 -1.3995 33 1 -0.4850 0.8401 0.0004 34 1 -0.3732 -1.7578 0.9542 35 1 2.1864 -4.2536 0.9599 36 1 3.1390 -3.5646 -0.4237 37 1 4.9461 -5.7468 -2.8802 38 1 -1.1655 -6.8864 -4.8137 39 1 0.4704 -7.6675 -6.7008 40 1 2.2103 -7.3721 -6.4695 41 1 3.4702 -9.0273 -5.1844 42 1 2.4393 -11.5608 -5.4508 43 1 1.0996 -12.1360 -6.4905 44 1 3.9692 -12.2449 -7.0391 45 1 2.6299 -12.8206 -8.0811 46 1 4.2366 -10.6524 -8.7399 47 1 2.5391 -10.8102 -9.2837 48 1 1.4994 -2.6165 -2.1931 49 1 -0.2047 -2.8710 -1.6205 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888097466.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:31 Heat of formation + Delta-G solvation = 17.627475 kcal Electronic energy + Delta-G solvation = -34732.884966 eV Core-core repulsion = 30084.353895 eV Total energy + Delta-G solvation = -4648.531071 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.45417 -40.36949 -39.93628 -38.33398 -37.19426 -34.78698 -33.95246 -32.60978 -32.41830 -32.02129 -30.96200 -30.08532 -28.07692 -27.42981 -25.16475 -25.05557 -24.36014 -23.41074 -22.75090 -22.12581 -21.59185 -20.25821 -18.84333 -18.34549 -17.78887 -17.42127 -17.23244 -17.02280 -16.44374 -16.26323 -15.97191 -15.41143 -15.06818 -14.91234 -14.78141 -14.46046 -14.33273 -14.27514 -14.09338 -13.86379 -13.79814 -13.04971 -12.74989 -12.62795 -12.28563 -12.08163 -12.04766 -11.93378 -11.82564 -11.74034 -11.43788 -11.36302 -11.12868 -11.06604 -10.92778 -10.80472 -10.55178 -10.36661 -10.25729 -10.14303 -10.05603 -9.38508 -9.09685 -8.88396 -8.81804 -8.61758 -8.18522 -7.76518 -6.26417 -4.35720 0.89786 1.51160 2.22937 2.85751 3.23326 3.24112 3.28946 3.31981 3.80533 3.95367 4.01331 4.11581 4.15604 4.19006 4.27492 4.35290 4.38864 4.44738 4.48316 4.59883 4.63888 4.75199 4.83354 4.89755 4.97024 4.98342 5.10022 5.17156 5.26036 5.31328 5.39862 5.46992 5.62565 5.78651 5.84034 5.99058 6.08544 6.21114 6.29443 6.40710 6.55294 6.76415 6.81531 6.88567 6.98323 7.32437 7.35368 7.41708 7.74660 7.77311 7.96567 7.99305 8.45932 8.67092 9.34072 9.68021 10.79942 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.022594 B = 0.001925 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.984494 B =14538.721270 C =14758.931372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.071 0.929 9 C 0.249 3.751 10 O -0.567 6.567 11 C 0.014 3.986 12 N -0.422 5.422 13 C 0.410 3.590 14 N -0.563 5.563 15 C 0.335 3.665 16 N -0.538 5.538 17 C 0.295 3.705 18 C -0.057 4.057 19 N -0.442 5.442 20 C 0.240 3.760 21 N -0.475 5.475 22 C 0.085 3.915 23 C 0.103 3.897 24 H 0.113 0.887 25 O -0.540 6.540 26 C 0.044 3.956 27 H 0.079 0.921 28 C -0.149 4.149 29 C -0.155 4.155 30 C 0.046 3.954 31 O -0.370 6.370 32 C 0.009 3.991 33 H 0.273 0.727 34 H 0.391 0.609 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.199 0.801 38 H 0.220 0.780 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.385 0.615 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.060 0.940 48 H 0.064 0.936 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.948 -21.741 -19.090 29.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.089 0.911 9 C 0.207 3.793 10 O -0.380 6.380 11 C -0.113 4.113 12 N -0.140 5.140 13 C 0.163 3.837 14 N -0.285 5.285 15 C 0.044 3.956 16 N -0.260 5.260 17 C 0.054 3.946 18 C -0.182 4.182 19 N -0.159 5.159 20 C -0.046 4.046 21 N -0.169 5.169 22 C -0.037 4.037 23 C 0.042 3.958 24 H 0.131 0.869 25 O -0.346 6.346 26 C -0.015 4.015 27 H 0.097 0.903 28 C -0.186 4.186 29 C -0.193 4.193 30 C -0.030 4.030 31 O -0.289 6.289 32 C -0.116 4.116 33 H 0.083 0.917 34 H 0.247 0.753 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.216 0.784 38 H 0.236 0.764 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.234 0.766 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.111 0.889 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.489 -22.413 -17.925 28.807 hybrid contribution 0.661 1.160 -1.748 2.200 sum 3.150 -21.253 -19.673 29.131 Atomic orbital electron populations 1.69284 1.06132 1.28063 1.50327 1.25092 0.95020 0.99807 0.93288 0.86410 0.79501 0.81779 0.78927 1.20027 1.21037 1.19802 1.21491 0.93835 0.90042 1.51532 0.91130 1.19411 0.85070 0.91257 0.83567 1.86059 1.44975 1.48142 1.58793 1.24216 0.96707 0.94933 0.95452 1.66205 1.25896 1.14657 1.07269 1.20531 0.86954 0.89024 0.87174 1.68579 1.07399 1.23706 1.28856 1.24544 1.00241 0.87020 0.83841 1.67194 1.06295 1.24692 1.27788 1.18748 0.89526 0.95254 0.91096 1.19806 0.91381 1.07096 0.99924 1.70369 1.17613 1.15802 1.12120 1.25512 0.88254 0.97503 0.93313 1.44945 1.05507 1.43378 1.23024 1.22530 1.04788 0.91182 0.85218 1.22349 0.91079 0.92168 0.90234 0.86928 1.86585 1.17615 1.88034 1.42383 1.23751 0.90461 0.94308 0.93003 0.90345 1.22908 0.99791 0.94815 1.01134 1.22934 1.00357 0.98575 0.97408 1.23415 1.01338 0.84934 0.93342 1.89117 1.46451 1.36316 1.57040 1.24831 1.01779 0.81963 1.03071 0.91679 0.75277 0.90581 0.88099 0.78415 0.76414 0.87933 0.87799 0.76607 0.89161 0.90492 0.90463 0.90552 0.88866 0.92167 0.91764 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.17 11.02 55.43 0.61 -23.56 16 2 C 0.07 1.86 5.40 -17.82 -0.10 1.76 16 3 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.53 -14.29 8.69 -34.44 -0.30 -14.59 16 8 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 9 C 0.25 6.51 1.57 -91.24 -0.14 6.37 16 10 O -0.57 -15.68 13.54 -35.23 -0.48 -16.16 16 11 C 0.01 0.34 6.81 -7.55 -0.05 0.29 16 12 N -0.42 -9.95 6.44 -182.28 -1.17 -11.13 16 13 C 0.41 8.80 5.89 -154.66 -0.91 7.89 16 14 N -0.56 -10.95 8.36 -13.61 -0.11 -11.06 16 15 C 0.33 5.38 12.25 -92.07 -1.13 4.25 16 16 N -0.54 -8.60 10.47 -13.90 -0.15 -8.75 16 17 C 0.30 4.95 7.66 -155.81 -1.19 3.75 16 18 C -0.06 -1.13 7.23 -84.54 -0.61 -1.74 16 19 N -0.44 -8.10 11.28 -11.85 -0.13 -8.23 16 20 C 0.24 3.06 12.51 -89.49 -1.12 1.94 16 21 N -0.47 -5.98 2.76 -117.62 -0.32 -6.30 16 22 C 0.09 0.71 5.61 -4.04 -0.02 0.69 16 23 C 0.10 0.79 3.16 -26.73 -0.08 0.71 16 24 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 25 O -0.54 -5.74 11.85 -42.26 -0.50 -6.24 16 26 C 0.04 0.25 3.14 -25.96 -0.08 0.17 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 C -0.15 -0.82 6.53 -25.16 -0.16 -0.99 16 29 C -0.15 -0.71 7.09 -25.16 -0.18 -0.89 16 30 C 0.05 0.23 7.63 37.94 0.29 0.52 16 31 O -0.37 -2.69 10.37 -42.26 -0.44 -3.13 16 32 C 0.01 0.24 7.08 -7.55 -0.05 0.18 16 33 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.39 10.89 6.33 45.56 0.29 11.18 16 35 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 36 H 0.10 2.30 6.66 -51.93 -0.35 1.95 16 37 H 0.20 2.32 8.06 -52.49 -0.42 1.90 16 38 H 0.22 1.54 8.06 -52.49 -0.42 1.11 16 39 H 0.10 0.52 8.13 -51.93 -0.42 0.10 16 40 H 0.10 0.98 7.87 -51.93 -0.41 0.57 16 41 H 0.38 3.79 8.62 45.56 0.39 4.18 16 42 H 0.09 0.65 7.07 -51.93 -0.37 0.28 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.06 1.60 7.85 -51.93 -0.41 1.19 16 49 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 403.21 15.07 6.08 6.08 Total: -1.00 -33.82 403.21 -12.95 -46.77 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -5.47 Total: 15.90 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: -5.85 Total: 10.31 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -1.28 Total: -69.02 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -1.42 Total: -25.53 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.82 -12.95 -46.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888097466.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.398 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds