Wall clock time and date at job start Tue Mar 31 2020 05:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99937 * 2 1 4 4 H 1.48500 * 109.47155 * 240.00070 * 3 2 1 5 5 H 1.48501 * 109.47411 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46812 * 120.00344 * 3 2 1 7 7 C 1.37879 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00035 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99650 * 0.02562 * 7 2 1 10 10 O 1.42903 * 113.38301 * 313.07353 * 9 7 2 11 11 C 1.53510 * 114.16987 * 179.97438 * 9 7 2 12 12 N 1.47478 * 87.93344 * 220.32559 * 11 9 7 13 13 C 1.38392 * 110.99894 * 138.70101 * 12 11 9 14 14 N 1.32906 * 120.77617 * 359.97438 * 13 12 11 15 15 C 1.32041 * 121.19033 * 180.02562 * 14 13 12 16 16 N 1.31645 * 122.46978 * 359.96589 * 15 14 13 17 17 C 1.32890 * 120.63619 * 0.02562 * 16 15 14 18 18 C 1.40514 * 120.77167 * 179.97438 * 13 12 11 19 19 N 1.35468 * 134.68729 * 359.94173 * 18 13 12 20 20 C 1.30144 * 109.44107 * 180.02562 * 19 18 13 21 21 N 1.36321 * 109.97378 * 0.02562 * 20 19 18 22 22 C 1.46502 * 126.27399 * 179.97438 * 21 20 19 23 23 C 1.53001 * 109.47075 * 265.02321 * 22 21 20 24 24 H 1.09000 * 109.46740 * 55.00147 * 23 22 21 25 25 O 1.42899 * 109.47110 * 295.00073 * 23 22 21 26 26 C 1.52996 * 109.47038 * 175.00199 * 23 22 21 27 27 H 1.09001 * 110.33572 * 297.24830 * 26 23 22 28 28 C 1.54479 * 110.37272 * 175.00121 * 26 23 22 29 29 C 1.54514 * 104.06288 * 217.18799 * 28 26 23 30 30 C 1.54484 * 104.06250 * 0.02562 * 29 28 26 31 31 O 1.44425 * 104.80367 * 23.97587 * 30 29 28 32 32 C 1.47481 * 87.83517 * 27.00927 * 12 11 9 33 33 H 0.97004 * 119.99738 * 359.97438 * 1 2 3 34 34 H 0.96703 * 113.99654 * 46.92085 * 10 9 7 35 35 H 1.09002 * 113.47674 * 105.55724 * 11 9 7 36 36 H 1.09000 * 113.47679 * 335.09517 * 11 9 7 37 37 H 1.08002 * 118.76454 * 179.97438 * 15 14 13 38 38 H 1.07999 * 125.01049 * 179.73375 * 20 19 18 39 39 H 1.08996 * 109.47054 * 25.02346 * 22 21 20 40 40 H 1.08998 * 109.46681 * 145.02173 * 22 21 20 41 41 H 0.96702 * 114.00303 * 300.00303 * 25 23 22 42 42 H 1.08999 * 110.51253 * 335.83051 * 28 26 23 43 43 H 1.09001 * 110.51379 * 98.40591 * 28 26 23 44 44 H 1.09003 * 110.51095 * 118.64443 * 29 28 26 45 45 H 1.08999 * 110.50959 * 241.35341 * 29 28 26 46 46 H 1.08997 * 110.37333 * 142.80900 * 30 29 28 47 47 H 1.09001 * 110.36694 * 265.03540 * 30 29 28 48 48 H 1.09004 * 113.47537 * 87.75350 * 32 12 11 49 49 H 1.08997 * 113.47618 * 218.22135 * 32 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 8 0.1913 -2.5430 0.9560 11 6 2.1496 -3.7437 -0.0028 12 7 1.2075 -4.3575 -0.9571 13 6 1.8842 -5.0423 -1.9512 14 7 3.2125 -5.0863 -1.9633 15 6 3.8665 -5.7369 -2.9081 16 7 3.2521 -6.3739 -3.8826 17 6 1.9251 -6.3856 -3.9531 18 6 1.1830 -5.7074 -2.9712 19 7 -0.1267 -5.8758 -3.2733 20 6 -0.2333 -6.5962 -4.3520 21 7 1.0052 -6.9358 -4.8093 22 6 1.2997 -7.7409 -5.9974 23 6 1.4933 -9.2023 -5.5879 24 1 0.6170 -9.5445 -5.0374 25 8 2.6513 -9.3151 -4.7582 26 6 1.6772 -10.0626 -6.8397 27 1 0.7816 -10.0253 -7.4599 28 6 1.9989 -11.5216 -6.4471 29 6 3.0227 -11.9794 -7.5100 30 6 3.1989 -10.7425 -8.4187 31 8 2.8301 -9.6195 -7.5889 32 6 0.8554 -2.9953 -1.3995 33 1 -0.4850 0.8401 0.0004 34 1 -0.3732 -1.7578 0.9542 35 1 2.1864 -4.2536 0.9599 36 1 3.1390 -3.5646 -0.4237 37 1 4.9461 -5.7468 -2.8802 38 1 -1.1655 -6.8864 -4.8137 39 1 0.4704 -7.6675 -6.7008 40 1 2.2103 -7.3721 -6.4695 41 1 3.4702 -9.0273 -5.1844 42 1 2.4393 -11.5608 -5.4508 43 1 1.0996 -12.1360 -6.4905 44 1 3.9692 -12.2449 -7.0391 45 1 2.6299 -12.8206 -8.0811 46 1 4.2366 -10.6524 -8.7399 47 1 2.5391 -10.8102 -9.2837 48 1 1.4994 -2.6165 -2.1931 49 1 -0.2047 -2.8710 -1.6205 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888097466.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:30 Heat of formation + Delta-G solvation = -8.247897 kcal Electronic energy + Delta-G solvation = -34734.007006 eV Core-core repulsion = 30084.353895 eV Total energy + Delta-G solvation = -4649.653112 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.174 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.69148 -41.70214 -40.74517 -39.78288 -37.88877 -36.61767 -35.11460 -34.14546 -33.77122 -33.02555 -31.65138 -31.51760 -29.34043 -28.61019 -26.99344 -26.79412 -25.11675 -24.67047 -24.16482 -22.63395 -22.06696 -21.50907 -20.71891 -19.64151 -19.30945 -18.86536 -18.04943 -17.73766 -17.45564 -17.30710 -17.09856 -16.75039 -16.51658 -16.27118 -15.90752 -15.83203 -15.59333 -15.28896 -15.04054 -14.83735 -14.66799 -14.53989 -14.19996 -13.99240 -13.67106 -13.40661 -13.28944 -12.84292 -12.74846 -12.70372 -12.65376 -12.55372 -12.51535 -12.31297 -12.23790 -12.16389 -12.04246 -11.52018 -11.47781 -11.35196 -11.26003 -10.74089 -10.70932 -10.48140 -10.31346 -10.20354 -10.05094 -9.31471 -8.27378 -6.45247 -0.45325 0.14996 1.21135 1.44527 1.46133 1.54748 1.71519 2.36727 2.55818 2.76555 2.81596 2.92157 2.96632 3.13613 3.27393 3.35109 3.47123 3.61529 3.69896 3.83414 3.85730 3.97747 4.02827 4.05008 4.12509 4.20046 4.24694 4.30970 4.37945 4.44180 4.47961 4.58051 4.70734 4.74106 4.79964 4.88364 4.90338 4.98920 5.02190 5.04694 5.12152 5.19965 5.32708 5.37583 5.71780 5.72069 5.82478 5.91731 6.09227 6.14127 6.60228 6.63914 6.68260 7.09421 7.27358 7.51273 8.78660 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.022594 B = 0.001925 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.984494 B =14538.721270 C =14758.931372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.026 3.974 3 Si 0.974 3.026 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.555 4.555 8 H 0.070 0.930 9 C 0.230 3.770 10 O -0.579 6.579 11 C 0.027 3.973 12 N -0.431 5.431 13 C 0.371 3.629 14 N -0.574 5.574 15 C 0.324 3.676 16 N -0.521 5.521 17 C 0.289 3.711 18 C -0.080 4.080 19 N -0.505 5.505 20 C 0.277 3.723 21 N -0.466 5.466 22 C 0.083 3.917 23 C 0.102 3.898 24 H 0.119 0.881 25 O -0.564 6.564 26 C 0.050 3.950 27 H 0.105 0.895 28 C -0.149 4.149 29 C -0.153 4.153 30 C 0.042 3.958 31 O -0.391 6.391 32 C 0.027 3.973 33 H 0.277 0.723 34 H 0.386 0.614 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.239 0.761 38 H 0.279 0.721 39 H 0.147 0.853 40 H 0.094 0.906 41 H 0.385 0.615 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.074 0.926 48 H 0.054 0.946 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.910 -23.139 -22.035 32.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.174 4.174 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.593 4.593 8 H 0.088 0.912 9 C 0.188 3.812 10 O -0.391 6.391 11 C -0.101 4.101 12 N -0.149 5.149 13 C 0.125 3.875 14 N -0.297 5.297 15 C 0.033 3.967 16 N -0.242 5.242 17 C 0.044 3.956 18 C -0.204 4.204 19 N -0.223 5.223 20 C -0.009 4.009 21 N -0.158 5.158 22 C -0.037 4.037 23 C 0.042 3.958 24 H 0.136 0.864 25 O -0.370 6.370 26 C -0.008 4.008 27 H 0.123 0.877 28 C -0.187 4.187 29 C -0.190 4.190 30 C -0.034 4.034 31 O -0.311 6.311 32 C -0.100 4.100 33 H 0.087 0.913 34 H 0.242 0.758 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.255 0.745 38 H 0.294 0.706 39 H 0.165 0.835 40 H 0.113 0.887 41 H 0.234 0.766 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.093 0.907 48 H 0.072 0.928 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.478 -23.863 -20.904 31.821 hybrid contribution 0.634 1.400 -1.017 1.843 sum 3.113 -22.463 -21.921 31.541 Atomic orbital electron populations 1.69362 1.07273 1.29001 1.50254 1.25885 0.95883 1.02982 0.92610 0.85373 0.78269 0.77590 0.79001 1.19577 1.20331 1.19318 1.21702 0.93993 0.90940 1.52617 0.91151 1.19677 0.85234 0.92300 0.83984 1.86038 1.45488 1.47964 1.59630 1.24031 0.96621 0.93823 0.95601 1.66142 1.26639 1.13965 1.08200 1.20502 0.87995 0.90766 0.88272 1.68485 1.06875 1.24320 1.29999 1.25345 1.01734 0.86497 0.83114 1.67321 1.06008 1.23683 1.27228 1.19054 0.89819 0.95245 0.91440 1.19988 0.92760 1.07435 1.00245 1.70342 1.17228 1.19341 1.15417 1.26720 0.89862 0.93433 0.90885 1.45296 1.04513 1.42764 1.23239 1.22901 1.06276 0.90587 0.83962 1.22485 0.90258 0.92078 0.90984 0.86364 1.86566 1.18453 1.88242 1.43739 1.23755 0.91104 0.93637 0.92335 0.87714 1.22898 1.00505 0.95151 1.00169 1.22928 0.99881 0.99005 0.97230 1.23552 1.01925 0.84378 0.93527 1.89097 1.47125 1.37348 1.57533 1.24408 0.99983 0.83749 1.01870 0.91334 0.75841 0.90952 0.87666 0.74493 0.70564 0.83493 0.88729 0.76640 0.91364 0.89021 0.91245 0.88994 0.88668 0.90732 0.92764 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.50 11.02 21.45 0.24 -50.27 16 2 C 0.03 1.42 5.40 84.66 0.46 1.88 16 3 Si 0.97 42.29 29.54 68.60 2.03 44.31 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 7 C -0.55 -30.70 8.69 25.60 0.22 -30.48 16 8 H 0.07 3.79 7.81 -2.91 -0.02 3.76 16 9 C 0.23 12.52 1.57 -11.20 -0.02 12.51 16 10 O -0.58 -33.47 13.54 -148.98 -2.02 -35.49 16 11 C 0.03 1.33 6.81 83.57 0.57 1.90 16 12 N -0.43 -21.26 6.44 -731.01 -4.70 -25.97 16 13 C 0.37 16.44 5.89 133.46 0.79 17.22 16 14 N -0.57 -22.77 8.36 -196.97 -1.65 -24.42 16 15 C 0.32 10.24 12.25 180.85 2.22 12.46 16 16 N -0.52 -16.22 10.47 -197.89 -2.07 -18.29 16 17 C 0.29 9.39 7.66 133.86 1.03 10.41 16 18 C -0.08 -3.21 7.23 39.69 0.29 -2.92 16 19 N -0.50 -18.26 11.28 -191.39 -2.16 -20.42 16 20 C 0.28 6.23 12.51 179.95 2.25 8.48 16 21 N -0.47 -10.48 2.76 -526.04 -1.45 -11.94 16 22 C 0.08 1.08 5.61 86.38 0.48 1.57 16 23 C 0.10 1.28 3.16 30.59 0.10 1.38 16 24 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 25 O -0.56 -11.28 11.85 -142.26 -1.69 -12.96 16 26 C 0.05 0.43 3.14 31.10 0.10 0.52 16 27 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 28 C -0.15 -1.31 6.53 31.61 0.21 -1.10 16 29 C -0.15 -1.08 7.09 31.61 0.22 -0.86 16 30 C 0.04 0.33 7.63 72.49 0.55 0.88 16 31 O -0.39 -4.72 10.37 -142.26 -1.47 -6.19 16 32 C 0.03 1.41 7.08 83.57 0.59 2.00 16 33 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 34 H 0.39 22.50 6.33 -74.06 -0.47 22.03 16 35 H 0.07 3.53 8.14 -2.39 -0.02 3.51 16 36 H 0.11 5.00 6.66 -2.39 -0.02 4.98 16 37 H 0.24 5.20 8.06 -2.91 -0.02 5.18 16 38 H 0.28 2.38 8.06 -2.91 -0.02 2.35 16 39 H 0.15 0.66 8.13 -2.39 -0.02 0.64 16 40 H 0.09 1.51 7.87 -2.39 -0.02 1.50 16 41 H 0.38 7.30 8.62 -74.06 -0.64 6.66 16 42 H 0.07 0.92 7.07 -2.39 -0.02 0.90 16 43 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 48 H 0.05 2.85 7.85 -2.39 -0.02 2.83 16 49 H 0.06 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -78.01 403.21 -4.99 -83.00 By element: Atomic # 1 Polarization: 42.87 SS G_CDS: -0.09 Total: 42.78 kcal Atomic # 6 Polarization: 25.79 SS G_CDS: 10.05 Total: 35.84 kcal Atomic # 7 Polarization: -139.49 SS G_CDS: -11.80 Total: -151.29 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -5.18 Total: -54.64 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -78.01 -4.99 -83.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888097466.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.753 kcal (2) G-P(sol) polarization free energy of solvation -78.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds