Wall clock time and date at job start Tue Mar 31 2020 05:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99800 * 2 1 4 4 H 1.48502 * 109.47430 * 240.00544 * 3 2 1 5 5 H 1.48499 * 109.47305 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46652 * 120.00733 * 3 2 1 7 7 C 1.37876 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99911 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99982 * 359.97438 * 7 2 1 10 10 O 1.42898 * 113.38378 * 313.08848 * 9 7 2 11 11 C 1.53512 * 114.16986 * 180.02562 * 9 7 2 12 12 N 1.47481 * 87.93240 * 220.33348 * 11 9 7 13 13 C 1.38386 * 110.99828 * 138.70441 * 12 11 9 14 14 N 1.32909 * 120.77664 * 0.02562 * 13 12 11 15 15 C 1.32044 * 121.19449 * 179.97438 * 14 13 12 16 16 N 1.31646 * 122.46306 * 359.97438 * 15 14 13 17 17 C 1.32890 * 120.64077 * 0.03598 * 16 15 14 18 18 C 1.40515 * 120.77073 * 179.97438 * 13 12 11 19 19 N 1.35470 * 134.69523 * 0.02562 * 18 13 12 20 20 C 1.30138 * 109.43954 * 179.75930 * 19 18 13 21 21 N 1.36315 * 109.97791 * 0.38817 * 20 19 18 22 22 C 1.46503 * 126.27564 * 179.87437 * 21 20 19 23 23 C 1.52998 * 109.47557 * 264.69186 * 22 21 20 24 24 H 1.09005 * 109.46811 * 305.00324 * 23 22 21 25 25 O 1.42899 * 109.47084 * 64.99722 * 23 22 21 26 26 C 1.52991 * 109.47224 * 185.00072 * 23 22 21 27 27 H 1.08999 * 110.33548 * 62.74995 * 26 23 22 28 28 C 1.54481 * 110.37154 * 184.99586 * 26 23 22 29 29 C 1.54517 * 104.06349 * 142.81088 * 28 26 23 30 30 C 1.54479 * 104.06037 * 0.02562 * 29 28 26 31 31 O 1.44422 * 110.37314 * 300.37923 * 26 23 22 32 32 C 1.47483 * 87.83653 * 27.01318 * 12 11 9 33 33 H 0.96996 * 119.99739 * 359.97438 * 1 2 3 34 34 H 0.96697 * 114.00310 * 46.92024 * 10 9 7 35 35 H 1.08997 * 113.47595 * 105.56094 * 11 9 7 36 36 H 1.09008 * 113.47681 * 335.10195 * 11 9 7 37 37 H 1.08002 * 118.76522 * 179.97438 * 15 14 13 38 38 H 1.08010 * 125.00911 * 180.26632 * 20 19 18 39 39 H 1.09006 * 109.46703 * 144.68754 * 22 21 20 40 40 H 1.09001 * 109.47216 * 24.69248 * 22 21 20 41 41 H 0.96700 * 113.99953 * 60.00402 * 25 23 22 42 42 H 1.08996 * 110.51163 * 24.16940 * 28 26 23 43 43 H 1.08995 * 110.63589 * 261.51268 * 28 26 23 44 44 H 1.08991 * 110.51174 * 118.64513 * 29 28 26 45 45 H 1.08995 * 110.51247 * 241.35992 * 29 28 26 46 46 H 1.08997 * 110.37024 * 94.85221 * 30 29 28 47 47 H 1.08995 * 110.37315 * 217.18852 * 30 29 28 48 48 H 1.08994 * 113.47992 * 87.75299 * 32 12 11 49 49 H 1.08999 * 113.47220 * 218.22893 * 32 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 0.1919 -2.5425 0.9577 11 6 2.1497 -3.7438 -0.0005 12 7 1.2077 -4.3583 -0.9545 13 6 1.8846 -5.0440 -1.9478 14 7 3.2128 -5.0889 -1.9592 15 6 3.8671 -5.7411 -2.9027 16 7 3.2527 -6.3788 -3.8768 17 6 1.9257 -6.3894 -3.9482 18 6 1.1835 -5.7099 -2.9674 19 7 -0.1262 -5.8775 -3.2705 20 6 -0.2323 -6.5947 -4.3512 21 7 1.0060 -6.9397 -4.8046 22 6 1.3009 -7.7452 -5.9923 23 6 1.4945 -9.2065 -5.5825 24 1 2.2639 -9.2690 -4.8128 25 8 0.2652 -9.7243 -5.0701 26 6 1.9244 -10.0253 -6.8012 27 1 2.8860 -9.6728 -7.1744 28 6 2.0049 -11.5252 -6.4402 29 6 1.4909 -12.2445 -7.7074 30 6 1.1613 -11.0941 -8.6844 31 8 0.9216 -9.9485 -7.8377 32 6 0.8557 -2.9965 -1.3981 33 1 -0.4849 0.8400 0.0004 34 1 -0.3726 -1.7575 0.9559 35 1 2.1865 -4.2528 0.9626 36 1 3.1392 -3.5649 -0.4215 37 1 4.9466 -5.7517 -2.8742 38 1 -1.1643 -6.8768 -4.8187 39 1 2.2116 -7.3764 -6.4644 40 1 0.4717 -7.6720 -6.6960 41 1 -0.4659 -9.6999 -5.7026 42 1 1.3630 -11.7478 -5.5879 43 1 3.0340 -11.8145 -6.2278 44 1 2.2668 -12.8874 -8.1229 45 1 0.5949 -12.8226 -7.4815 46 1 2.0054 -10.9064 -9.3479 47 1 0.2685 -11.3315 -9.2627 48 1 1.4997 -2.6183 -2.1919 49 1 -0.2044 -2.8724 -1.6192 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888097467.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:35 Heat of formation + Delta-G solvation = 16.441618 kcal Electronic energy + Delta-G solvation = -34549.507978 eV Core-core repulsion = 29900.925484 eV Total energy + Delta-G solvation = -4648.582494 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.48855 -40.42336 -39.96319 -38.38493 -37.29675 -34.84984 -34.02026 -32.64607 -32.41676 -32.03001 -31.04302 -30.11138 -28.09436 -27.46428 -25.21649 -25.09389 -24.34634 -23.45143 -22.76615 -22.15590 -21.64069 -20.32390 -18.86494 -18.39997 -17.79993 -17.43725 -17.25114 -17.11878 -16.51060 -16.32897 -15.98595 -15.44161 -15.09757 -14.89523 -14.75009 -14.53857 -14.45903 -14.27708 -14.15618 -13.90058 -13.82718 -13.07479 -12.78361 -12.62371 -12.29865 -12.15599 -12.08806 -11.98031 -11.85414 -11.77021 -11.46507 -11.40728 -11.19279 -11.11153 -10.95939 -10.83035 -10.58834 -10.38596 -10.30588 -10.16268 -10.07149 -9.40183 -9.15225 -8.93174 -8.85684 -8.62951 -8.20145 -7.79038 -6.27351 -4.36800 0.86265 1.43691 2.19784 2.85809 3.19659 3.23309 3.28328 3.31177 3.74618 3.88110 3.95985 4.09237 4.10961 4.13884 4.26287 4.31281 4.37457 4.41095 4.47545 4.59975 4.66326 4.69620 4.81075 4.89673 4.96900 5.01964 5.08416 5.13411 5.23068 5.30432 5.35903 5.44643 5.60082 5.76155 5.79881 5.97143 6.06442 6.16643 6.27106 6.37962 6.51220 6.73631 6.78653 6.86620 6.96950 7.15040 7.33326 7.35782 7.73617 7.76288 7.94771 7.97670 8.39308 8.66014 9.33061 9.67039 10.79042 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.023093 B = 0.001866 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.206518 B =15001.539018 C =15158.204549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.071 0.929 9 C 0.249 3.751 10 O -0.567 6.567 11 C 0.014 3.986 12 N -0.422 5.422 13 C 0.410 3.590 14 N -0.562 5.562 15 C 0.335 3.665 16 N -0.548 5.548 17 C 0.278 3.722 18 C -0.051 4.051 19 N -0.445 5.445 20 C 0.257 3.743 21 N -0.472 5.472 22 C 0.087 3.913 23 C 0.104 3.896 24 H 0.117 0.883 25 O -0.546 6.546 26 C 0.045 3.955 27 H 0.081 0.919 28 C -0.149 4.149 29 C -0.155 4.155 30 C 0.047 3.953 31 O -0.374 6.374 32 C 0.010 3.990 33 H 0.273 0.727 34 H 0.391 0.609 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.201 0.799 38 H 0.219 0.781 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.379 0.621 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.093 0.907 48 H 0.064 0.936 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.009 -21.634 -19.066 28.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.089 0.911 9 C 0.207 3.793 10 O -0.379 6.379 11 C -0.113 4.113 12 N -0.140 5.140 13 C 0.164 3.836 14 N -0.284 5.284 15 C 0.043 3.957 16 N -0.270 5.270 17 C 0.037 3.963 18 C -0.176 4.176 19 N -0.162 5.162 20 C -0.029 4.029 21 N -0.166 5.166 22 C -0.035 4.035 23 C 0.044 3.956 24 H 0.134 0.866 25 O -0.351 6.351 26 C -0.014 4.014 27 H 0.099 0.901 28 C -0.187 4.187 29 C -0.193 4.193 30 C -0.030 4.030 31 O -0.293 6.293 32 C -0.116 4.116 33 H 0.083 0.917 34 H 0.247 0.753 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.217 0.783 38 H 0.235 0.765 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.227 0.773 42 H 0.108 0.892 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.112 0.888 48 H 0.083 0.917 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.064 -22.221 -17.826 28.652 hybrid contribution 0.414 1.110 -1.777 2.135 sum 3.477 -21.111 -19.603 29.018 Atomic orbital electron populations 1.69287 1.06128 1.28090 1.50268 1.25094 0.95022 0.99812 0.93270 0.86407 0.79499 0.81777 0.78919 1.20033 1.21022 1.19801 1.21488 0.93830 0.90035 1.51595 0.91129 1.19409 0.85072 0.91245 0.83555 1.86058 1.45007 1.48175 1.58710 1.24226 0.96698 0.94954 0.95461 1.66203 1.25855 1.14664 1.07254 1.20555 0.86929 0.88994 0.87155 1.68590 1.07417 1.23611 1.28831 1.24550 1.00256 0.87071 0.83800 1.67229 1.06242 1.25611 1.27951 1.18870 0.89577 0.96193 0.91672 1.19809 0.91453 1.06632 0.99693 1.70396 1.17399 1.16311 1.12104 1.25477 0.88188 0.96367 0.92876 1.44965 1.05548 1.43125 1.22950 1.22505 1.04931 0.90776 0.85308 1.22367 0.88565 0.89966 0.94744 0.86564 1.86637 1.19909 1.85045 1.43507 1.23721 0.92711 0.96325 0.88602 0.90104 1.22911 1.02840 0.93592 0.99340 1.22935 1.02146 0.98565 0.95633 1.23426 1.01704 0.84649 0.93199 1.89061 1.53357 1.46659 1.40224 1.24844 1.01848 0.81850 1.03093 0.91659 0.75258 0.90541 0.88095 0.78297 0.76471 0.88051 0.87524 0.77252 0.89196 0.90388 0.90502 0.90470 0.92078 0.88839 0.91729 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.10 11.02 55.43 0.61 -23.49 16 2 C 0.07 1.85 5.40 -17.82 -0.10 1.76 16 3 Si 0.91 20.44 29.54 -169.99 -5.02 15.42 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.53 -14.25 8.68 -34.44 -0.30 -14.54 16 8 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 9 C 0.25 6.49 1.57 -91.24 -0.14 6.35 16 10 O -0.57 -15.63 13.54 -35.23 -0.48 -16.11 16 11 C 0.01 0.33 6.81 -7.54 -0.05 0.28 16 12 N -0.42 -9.89 6.43 -182.25 -1.17 -11.06 16 13 C 0.41 8.74 5.89 -154.66 -0.91 7.83 16 14 N -0.56 -10.77 8.36 -13.61 -0.11 -10.88 16 15 C 0.33 5.26 12.25 -92.07 -1.13 4.13 16 16 N -0.55 -8.68 10.47 -13.90 -0.15 -8.82 16 17 C 0.28 4.64 8.05 -155.81 -1.25 3.38 16 18 C -0.05 -1.00 7.23 -84.54 -0.61 -1.61 16 19 N -0.44 -8.25 11.28 -11.84 -0.13 -8.38 16 20 C 0.26 3.40 12.51 -89.50 -1.12 2.28 16 21 N -0.47 -6.02 2.74 -117.62 -0.32 -6.34 16 22 C 0.09 0.74 5.59 -4.04 -0.02 0.71 16 23 C 0.10 0.82 3.16 -26.74 -0.08 0.74 16 24 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 25 O -0.55 -4.68 12.22 -42.20 -0.52 -5.20 16 26 C 0.05 0.28 3.14 -25.96 -0.08 0.19 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 C -0.15 -0.84 6.53 -25.16 -0.16 -1.00 16 29 C -0.15 -0.67 7.09 -25.16 -0.18 -0.84 16 30 C 0.05 0.21 7.63 37.93 0.29 0.50 16 31 O -0.37 -2.39 10.37 -42.20 -0.44 -2.83 16 32 C 0.01 0.23 7.08 -7.53 -0.05 0.18 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.39 10.87 6.34 45.56 0.29 11.15 16 35 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 36 H 0.10 2.28 6.66 -51.92 -0.35 1.93 16 37 H 0.20 2.24 8.06 -52.49 -0.42 1.81 16 38 H 0.22 1.75 8.06 -52.48 -0.42 1.32 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.11 0.67 7.86 -51.93 -0.41 0.27 16 41 H 0.38 2.15 8.63 45.56 0.39 2.54 16 42 H 0.09 0.62 7.07 -51.93 -0.37 0.26 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.06 1.59 7.85 -51.93 -0.41 1.19 16 49 H 0.08 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 403.94 15.07 6.09 6.09 Total: -1.00 -33.50 403.94 -13.01 -46.52 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -5.47 Total: 14.74 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: -5.91 Total: 10.34 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: -1.28 Total: -68.97 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -1.43 Total: -24.13 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.50 -13.01 -46.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888097467.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.960 kcal (2) G-P(sol) polarization free energy of solvation -33.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds