Wall clock time and date at job start Tue Mar 31 2020 05:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99800 * 2 1 4 4 H 1.48502 * 109.47430 * 240.00544 * 3 2 1 5 5 H 1.48499 * 109.47305 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46652 * 120.00733 * 3 2 1 7 7 C 1.37876 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99911 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99982 * 359.97438 * 7 2 1 10 10 O 1.42898 * 113.38378 * 313.08848 * 9 7 2 11 11 C 1.53512 * 114.16986 * 180.02562 * 9 7 2 12 12 N 1.47481 * 87.93240 * 220.33348 * 11 9 7 13 13 C 1.38386 * 110.99828 * 138.70441 * 12 11 9 14 14 N 1.32909 * 120.77664 * 0.02562 * 13 12 11 15 15 C 1.32044 * 121.19449 * 179.97438 * 14 13 12 16 16 N 1.31646 * 122.46306 * 359.97438 * 15 14 13 17 17 C 1.32890 * 120.64077 * 0.03598 * 16 15 14 18 18 C 1.40515 * 120.77073 * 179.97438 * 13 12 11 19 19 N 1.35470 * 134.69523 * 0.02562 * 18 13 12 20 20 C 1.30138 * 109.43954 * 179.75930 * 19 18 13 21 21 N 1.36315 * 109.97791 * 0.38817 * 20 19 18 22 22 C 1.46503 * 126.27564 * 179.87437 * 21 20 19 23 23 C 1.52998 * 109.47557 * 264.69186 * 22 21 20 24 24 H 1.09005 * 109.46811 * 305.00324 * 23 22 21 25 25 O 1.42899 * 109.47084 * 64.99722 * 23 22 21 26 26 C 1.52991 * 109.47224 * 185.00072 * 23 22 21 27 27 H 1.08999 * 110.33548 * 62.74995 * 26 23 22 28 28 C 1.54481 * 110.37154 * 184.99586 * 26 23 22 29 29 C 1.54517 * 104.06349 * 142.81088 * 28 26 23 30 30 C 1.54479 * 104.06037 * 0.02562 * 29 28 26 31 31 O 1.44422 * 110.37314 * 300.37923 * 26 23 22 32 32 C 1.47483 * 87.83653 * 27.01318 * 12 11 9 33 33 H 0.96996 * 119.99739 * 359.97438 * 1 2 3 34 34 H 0.96697 * 114.00310 * 46.92024 * 10 9 7 35 35 H 1.08997 * 113.47595 * 105.56094 * 11 9 7 36 36 H 1.09008 * 113.47681 * 335.10195 * 11 9 7 37 37 H 1.08002 * 118.76522 * 179.97438 * 15 14 13 38 38 H 1.08010 * 125.00911 * 180.26632 * 20 19 18 39 39 H 1.09006 * 109.46703 * 144.68754 * 22 21 20 40 40 H 1.09001 * 109.47216 * 24.69248 * 22 21 20 41 41 H 0.96700 * 113.99953 * 60.00402 * 25 23 22 42 42 H 1.08996 * 110.51163 * 24.16940 * 28 26 23 43 43 H 1.08995 * 110.63589 * 261.51268 * 28 26 23 44 44 H 1.08991 * 110.51174 * 118.64513 * 29 28 26 45 45 H 1.08995 * 110.51247 * 241.35992 * 29 28 26 46 46 H 1.08997 * 110.37024 * 94.85221 * 30 29 28 47 47 H 1.08995 * 110.37315 * 217.18852 * 30 29 28 48 48 H 1.08994 * 113.47992 * 87.75299 * 32 12 11 49 49 H 1.08999 * 113.47220 * 218.22893 * 32 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 0.1919 -2.5425 0.9577 11 6 2.1497 -3.7438 -0.0005 12 7 1.2077 -4.3583 -0.9545 13 6 1.8846 -5.0440 -1.9478 14 7 3.2128 -5.0889 -1.9592 15 6 3.8671 -5.7411 -2.9027 16 7 3.2527 -6.3788 -3.8768 17 6 1.9257 -6.3894 -3.9482 18 6 1.1835 -5.7099 -2.9674 19 7 -0.1262 -5.8775 -3.2705 20 6 -0.2323 -6.5947 -4.3512 21 7 1.0060 -6.9397 -4.8046 22 6 1.3009 -7.7452 -5.9923 23 6 1.4945 -9.2065 -5.5825 24 1 2.2639 -9.2690 -4.8128 25 8 0.2652 -9.7243 -5.0701 26 6 1.9244 -10.0253 -6.8012 27 1 2.8860 -9.6728 -7.1744 28 6 2.0049 -11.5252 -6.4402 29 6 1.4909 -12.2445 -7.7074 30 6 1.1613 -11.0941 -8.6844 31 8 0.9216 -9.9485 -7.8377 32 6 0.8557 -2.9965 -1.3981 33 1 -0.4849 0.8400 0.0004 34 1 -0.3726 -1.7575 0.9559 35 1 2.1865 -4.2528 0.9626 36 1 3.1392 -3.5649 -0.4215 37 1 4.9466 -5.7517 -2.8742 38 1 -1.1643 -6.8768 -4.8187 39 1 2.2116 -7.3764 -6.4644 40 1 0.4717 -7.6720 -6.6960 41 1 -0.4659 -9.6999 -5.7026 42 1 1.3630 -11.7478 -5.5879 43 1 3.0340 -11.8145 -6.2278 44 1 2.2668 -12.8874 -8.1229 45 1 0.5949 -12.8226 -7.4815 46 1 2.0054 -10.9064 -9.3479 47 1 0.2685 -11.3315 -9.2627 48 1 1.4997 -2.6183 -2.1919 49 1 -0.2044 -2.8724 -1.6192 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888097467.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:34 Heat of formation + Delta-G solvation = -8.789789 kcal Electronic energy + Delta-G solvation = -34550.602094 eV Core-core repulsion = 29900.925484 eV Total energy + Delta-G solvation = -4649.676610 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 375.174 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.73674 -41.72624 -40.79291 -39.82052 -37.94488 -36.64636 -35.20805 -34.14436 -33.76455 -33.04301 -31.76076 -31.49799 -29.36324 -28.64119 -27.00791 -26.82667 -25.15858 -24.72776 -24.13538 -22.66241 -22.14225 -21.57005 -20.73102 -19.66049 -19.34684 -18.89599 -18.05227 -17.73235 -17.55805 -17.40253 -17.12538 -16.69416 -16.54537 -16.29106 -15.94385 -15.82008 -15.64383 -15.34358 -15.05453 -14.92077 -14.68587 -14.56901 -14.21651 -14.00075 -13.69239 -13.41000 -13.28486 -12.87099 -12.81102 -12.71286 -12.68486 -12.61089 -12.54030 -12.36943 -12.23987 -12.17272 -12.09301 -11.52988 -11.50471 -11.38981 -11.27175 -10.78004 -10.71146 -10.49573 -10.34791 -10.27550 -10.07907 -9.34451 -8.27383 -6.45360 -0.49639 0.08423 1.15445 1.44704 1.46303 1.54927 1.69318 2.36529 2.52064 2.70479 2.76539 2.88991 2.94565 3.11156 3.24442 3.25895 3.42066 3.58963 3.66233 3.76682 3.85147 3.94392 3.99946 4.03781 4.10513 4.15793 4.23089 4.29654 4.37820 4.42289 4.46168 4.52551 4.68634 4.73170 4.78328 4.87162 4.89514 4.98849 4.99164 5.03279 5.11381 5.17068 5.32225 5.33480 5.66392 5.71936 5.76901 5.91364 6.04957 6.11482 6.60299 6.65072 6.68781 7.03702 7.27365 7.51044 8.78681 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.023093 B = 0.001866 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.206518 B =15001.539018 C =15158.204549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.026 3.974 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.554 4.554 8 H 0.071 0.929 9 C 0.229 3.771 10 O -0.579 6.579 11 C 0.027 3.973 12 N -0.432 5.432 13 C 0.374 3.626 14 N -0.573 5.573 15 C 0.327 3.673 16 N -0.532 5.532 17 C 0.274 3.726 18 C -0.076 4.076 19 N -0.505 5.505 20 C 0.288 3.712 21 N -0.463 5.463 22 C 0.086 3.914 23 C 0.112 3.888 24 H 0.094 0.906 25 O -0.561 6.561 26 C 0.053 3.947 27 H 0.089 0.911 28 C -0.151 4.151 29 C -0.151 4.151 30 C 0.043 3.957 31 O -0.383 6.383 32 C 0.027 3.973 33 H 0.277 0.723 34 H 0.386 0.614 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.244 0.756 38 H 0.271 0.729 39 H 0.106 0.894 40 H 0.137 0.863 41 H 0.393 0.607 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.104 0.896 48 H 0.055 0.945 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.848 -22.878 -21.864 31.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.174 4.174 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.592 4.592 8 H 0.089 0.911 9 C 0.188 3.812 10 O -0.391 6.391 11 C -0.100 4.100 12 N -0.150 5.150 13 C 0.128 3.872 14 N -0.295 5.295 15 C 0.037 3.963 16 N -0.254 5.254 17 C 0.030 3.970 18 C -0.200 4.200 19 N -0.223 5.223 20 C 0.001 3.999 21 N -0.155 5.155 22 C -0.035 4.035 23 C 0.051 3.949 24 H 0.112 0.888 25 O -0.369 6.369 26 C -0.006 4.006 27 H 0.107 0.893 28 C -0.189 4.189 29 C -0.189 4.189 30 C -0.034 4.034 31 O -0.303 6.303 32 C -0.100 4.100 33 H 0.087 0.913 34 H 0.242 0.758 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.260 0.740 38 H 0.286 0.714 39 H 0.124 0.876 40 H 0.155 0.845 41 H 0.243 0.757 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.123 0.877 48 H 0.074 0.926 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.924 -23.517 -20.664 31.551 hybrid contribution 0.104 1.301 -1.081 1.695 sum 4.028 -22.216 -21.746 31.347 Atomic orbital electron populations 1.69367 1.07295 1.29007 1.50257 1.25890 0.95871 1.03002 0.92609 0.85370 0.78259 0.77574 0.79017 1.19533 1.20398 1.19302 1.21706 0.94022 0.90902 1.52604 0.91059 1.19684 0.85246 0.92342 0.83952 1.86037 1.45538 1.47993 1.59568 1.24045 0.96621 0.93764 0.95612 1.66131 1.26671 1.14002 1.08223 1.20518 0.88009 0.90581 0.88124 1.68509 1.06754 1.24247 1.30007 1.25419 1.01833 0.86215 0.82851 1.67369 1.05749 1.24755 1.27501 1.19155 0.89922 0.96017 0.91866 1.19991 0.92683 1.07169 1.00158 1.70361 1.17250 1.19572 1.15166 1.26524 0.89760 0.92825 0.90751 1.45282 1.04513 1.42497 1.23180 1.22866 1.06490 0.90239 0.83904 1.22178 0.87969 0.89841 0.94868 0.88824 1.86617 1.20575 1.85122 1.44547 1.23607 0.92924 0.96154 0.87900 0.89279 1.22903 1.02902 0.93588 0.99461 1.22927 1.02488 0.98594 0.94897 1.23581 1.02660 0.84011 0.93104 1.89035 1.53433 1.47467 1.40372 1.24426 1.00032 0.83626 1.01944 0.91345 0.75841 0.90866 0.87521 0.74022 0.71380 0.87585 0.84489 0.75730 0.90743 0.89894 0.89355 0.90468 0.91264 0.87750 0.92622 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.41 11.02 21.45 0.24 -50.17 16 2 C 0.03 1.40 5.40 84.65 0.46 1.86 16 3 Si 0.97 42.06 29.54 68.60 2.03 44.08 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.55 -30.47 8.68 25.60 0.22 -30.25 16 8 H 0.07 3.80 7.81 -2.91 -0.02 3.77 16 9 C 0.23 12.42 1.57 -11.19 -0.02 12.41 16 10 O -0.58 -33.37 13.54 -148.98 -2.02 -35.39 16 11 C 0.03 1.33 6.81 83.58 0.57 1.90 16 12 N -0.43 -21.14 6.43 -730.90 -4.70 -25.85 16 13 C 0.37 16.37 5.89 133.46 0.79 17.15 16 14 N -0.57 -22.11 8.36 -196.96 -1.65 -23.76 16 15 C 0.33 9.91 12.25 180.85 2.22 12.13 16 16 N -0.53 -16.11 10.47 -197.89 -2.07 -18.18 16 17 C 0.27 8.87 8.05 133.87 1.08 9.94 16 18 C -0.08 -3.02 7.23 39.70 0.29 -2.74 16 19 N -0.51 -18.69 11.28 -191.39 -2.16 -20.85 16 20 C 0.29 6.98 12.51 179.96 2.25 9.23 16 21 N -0.46 -10.76 2.74 -526.03 -1.44 -12.20 16 22 C 0.09 1.18 5.59 86.38 0.48 1.66 16 23 C 0.11 1.53 3.16 30.59 0.10 1.63 16 24 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 25 O -0.56 -8.41 12.22 -142.31 -1.74 -10.15 16 26 C 0.05 0.52 3.14 31.09 0.10 0.61 16 27 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 28 C -0.15 -1.41 6.53 31.61 0.21 -1.21 16 29 C -0.15 -0.94 7.09 31.61 0.22 -0.72 16 30 C 0.04 0.26 7.63 72.48 0.55 0.82 16 31 O -0.38 -3.73 10.37 -142.31 -1.48 -5.21 16 32 C 0.03 1.38 7.08 83.58 0.59 1.97 16 33 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 34 H 0.39 22.46 6.34 -74.06 -0.47 21.99 16 35 H 0.07 3.52 8.14 -2.39 -0.02 3.50 16 36 H 0.11 4.97 6.66 -2.38 -0.02 4.95 16 37 H 0.24 4.84 8.06 -2.91 -0.02 4.82 16 38 H 0.27 3.21 8.06 -2.91 -0.02 3.19 16 39 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.14 1.13 7.86 -2.39 -0.02 1.11 16 41 H 0.39 3.32 8.63 -74.06 -0.64 2.68 16 42 H 0.07 0.94 7.07 -2.39 -0.02 0.93 16 43 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 47 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.06 2.90 7.85 -2.39 -0.02 2.88 16 49 H 0.06 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -75.93 403.94 -4.98 -80.91 By element: Atomic # 1 Polarization: 40.44 SS G_CDS: -0.09 Total: 40.35 kcal Atomic # 6 Polarization: 26.32 SS G_CDS: 10.10 Total: 36.42 kcal Atomic # 7 Polarization: -139.23 SS G_CDS: -11.78 Total: -151.01 kcal Atomic # 8 Polarization: -45.51 SS G_CDS: -5.23 Total: -50.74 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -75.93 -4.98 -80.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888097467.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.117 kcal (2) G-P(sol) polarization free energy of solvation -75.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds