Wall clock time and date at job start Tue Mar 31 2020 05:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46507 * 120.00112 * 2 1 4 4 C 1.50697 * 109.47040 * 269.99761 * 3 2 1 5 5 H 1.08003 * 120.00044 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00226 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00021 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00037 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47360 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47213 * 120.00391 * 8 6 4 11 11 H 1.48501 * 109.47243 * 240.00020 * 8 6 4 12 12 C 1.34776 * 120.00080 * 179.97438 * 2 1 3 13 13 O 1.21517 * 119.99937 * 184.36981 * 12 2 1 14 14 C 1.48155 * 120.00080 * 4.37353 * 12 2 1 15 15 C 1.39798 * 120.91142 * 150.03604 * 14 12 2 16 16 C 1.38254 * 119.00983 * 180.29567 * 15 14 12 17 17 Br 1.89107 * 119.55367 * 179.72143 * 16 15 14 18 18 N 1.31892 * 120.89168 * 359.42793 * 16 15 14 19 19 C 1.31906 * 122.01459 * 0.59248 * 18 16 15 20 20 Br 1.89103 * 119.55401 * 179.72334 * 19 18 16 21 21 C 1.38252 * 120.88746 * 359.69626 * 19 18 16 22 22 H 1.09003 * 109.46824 * 272.48399 * 1 2 3 23 23 H 1.08994 * 109.46650 * 32.48396 * 1 2 3 24 24 H 1.08998 * 109.46763 * 152.48789 * 1 2 3 25 25 H 1.09000 * 109.47000 * 29.99565 * 3 2 1 26 26 H 1.08999 * 109.47065 * 149.99758 * 3 2 1 27 27 H 0.96995 * 120.00228 * 180.02562 * 7 6 4 28 28 H 1.07993 * 120.49403 * 0.02634 * 15 14 12 29 29 H 1.07998 * 120.49419 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5534 3.6181 -0.6732 8 14 3.4369 3.4174 -3.4340 9 1 2.8589 2.4174 -4.3674 10 1 2.7989 4.7380 -3.6671 11 1 4.8993 3.5261 -3.6677 12 6 2.1389 -1.1672 0.0005 13 8 3.3514 -1.1686 0.0807 14 6 1.4014 -2.4484 -0.0967 15 6 1.9821 -3.5672 -0.7014 16 6 1.2560 -4.7414 -0.7763 17 35 2.0236 -6.2618 -1.5980 18 7 0.0375 -4.8170 -0.2773 19 6 -0.5467 -3.7854 0.3009 20 35 -2.2997 -3.9693 0.9859 21 6 0.1055 -2.5716 0.4133 22 1 -0.3633 0.0445 1.0267 23 1 -0.3632 0.8669 -0.5519 24 1 -0.3633 -0.9114 -0.4747 25 1 1.6085 2.0284 0.5138 26 1 3.1500 1.1384 0.5139 27 1 4.0296 4.4443 -0.8505 28 1 2.9812 -3.5138 -1.1078 29 1 -0.3790 -1.7309 0.8875 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888099752.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:32 Heat of formation + Delta-G solvation = 8.991750 kcal Electronic energy + Delta-G solvation = -17714.987090 eV Core-core repulsion = 14537.991792 eV Total energy + Delta-G solvation = -3176.995298 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 375.916 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.13072 -40.28430 -36.95791 -35.13600 -34.31349 -34.07549 -32.15313 -30.70060 -29.71151 -27.97102 -26.24603 -24.62490 -24.15366 -20.95881 -18.74226 -18.71465 -18.22832 -17.53157 -17.05785 -16.55185 -16.23706 -16.03302 -15.72667 -15.15836 -14.59483 -14.34743 -13.99925 -13.63457 -13.29605 -12.94462 -12.88601 -12.68586 -12.52572 -12.23897 -11.86080 -11.79382 -11.69377 -11.56315 -11.52510 -11.17142 -10.76255 -10.65913 -10.13399 -9.60944 -8.25196 -6.39519 -0.75553 -0.68931 -0.18080 0.15108 1.37492 1.39511 1.48690 1.53052 1.92988 2.23879 2.38139 2.98946 3.06866 3.34346 3.38325 3.54464 3.74360 4.05259 4.18989 4.52252 4.55627 4.70960 4.85626 4.96189 5.19220 5.44568 5.73156 5.97127 6.00321 6.45998 6.68528 7.05576 7.32073 8.82465 Molecular weight = 375.92amu Principal moments of inertia in cm(-1) A = 0.010468 B = 0.003476 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.159090 B = 8053.381301 C =10106.672497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.589 5.589 3 C 0.257 3.743 4 C -0.547 4.547 5 H 0.055 0.945 6 C 0.012 3.988 7 N -0.925 5.925 8 Si 0.965 3.035 9 H -0.267 1.267 10 H -0.270 1.270 11 H -0.282 1.282 12 C 0.543 3.457 13 O -0.572 6.572 14 C -0.067 4.067 15 C -0.077 4.077 16 C 0.122 3.878 17 Br 0.029 6.971 18 N -0.434 5.434 19 C 0.120 3.880 20 Br 0.037 6.963 21 C -0.099 4.099 22 H 0.093 0.907 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.037 0.963 26 H 0.008 0.992 27 H 0.268 0.732 28 H 0.161 0.839 29 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.501 -19.265 1.815 23.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.319 5.319 3 C 0.137 3.863 4 C -0.585 4.585 5 H 0.073 0.927 6 C -0.187 4.187 7 N -0.564 5.564 8 Si 0.789 3.211 9 H -0.192 1.192 10 H -0.195 1.195 11 H -0.208 1.208 12 C 0.330 3.670 13 O -0.453 6.453 14 C -0.080 4.080 15 C -0.100 4.100 16 C -0.097 4.097 17 Br 0.113 6.887 18 N -0.146 5.146 19 C -0.099 4.099 20 Br 0.121 6.879 21 C -0.121 4.121 22 H 0.111 0.889 23 H 0.099 0.901 24 H 0.112 0.888 25 H 0.055 0.945 26 H 0.026 0.974 27 H 0.077 0.923 28 H 0.178 0.822 29 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -13.629 -20.479 1.797 24.665 hybrid contribution 1.239 1.652 -0.676 2.173 sum -12.390 -18.827 1.121 22.566 Atomic orbital electron populations 1.22712 0.77933 1.04739 1.03535 1.48068 1.08564 1.06077 1.69172 1.18944 0.91575 0.79353 0.96453 1.21701 1.37181 1.06744 0.92897 0.92678 1.25788 0.94818 0.96381 1.01741 1.70035 1.38699 1.14782 1.32882 0.85406 0.77888 0.78441 0.79326 1.19155 1.19495 1.20800 1.18355 0.86783 0.83914 0.77951 1.90761 1.15233 1.87414 1.51878 1.20339 0.94705 0.94015 0.98897 1.22268 1.01539 0.90343 0.95852 1.22804 0.92214 0.93851 1.00789 1.96842 1.79455 1.34813 1.77567 1.67173 1.09369 1.30998 1.07100 1.23048 0.96010 0.90596 1.00219 1.96866 1.09400 1.98438 1.83152 1.23213 0.92820 0.98819 0.97221 0.88910 0.90137 0.88849 0.94537 0.97427 0.92285 0.82170 0.78691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.37 8.80 127.77 1.12 2.50 15 2 N -0.59 -23.26 2.86 -854.22 -2.44 -25.70 15 3 C 0.26 13.01 5.21 85.63 0.45 13.46 15 4 C -0.55 -29.99 9.39 25.60 0.24 -29.75 15 5 H 0.05 3.00 7.81 -2.91 -0.02 2.97 15 6 C 0.01 0.68 5.46 84.65 0.46 1.15 15 7 N -0.92 -53.74 13.29 21.45 0.28 -53.46 15 8 Si 0.96 43.32 29.54 68.60 2.03 45.34 15 9 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 10 H -0.27 -11.50 7.11 99.48 0.71 -10.80 15 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 12 C 0.54 21.71 7.50 86.88 0.65 22.36 15 13 O -0.57 -28.27 16.35 -3.77 -0.06 -28.34 15 14 C -0.07 -2.00 5.53 -19.89 -0.11 -2.11 15 15 C -0.08 -2.16 9.42 22.65 0.21 -1.95 15 16 C 0.12 3.08 7.16 84.69 0.61 3.69 15 17 Br 0.03 0.62 33.86 -20.37 -0.69 -0.07 15 18 N -0.43 -10.88 10.26 -185.84 -1.91 -12.79 15 19 C 0.12 2.69 7.16 84.69 0.61 3.30 15 20 Br 0.04 0.65 33.86 -20.37 -0.69 -0.04 15 21 C -0.10 -2.27 7.30 22.65 0.17 -2.11 15 22 H 0.09 1.82 7.40 -2.39 -0.02 1.80 15 23 H 0.08 2.20 8.09 -2.39 -0.02 2.18 15 24 H 0.09 2.03 4.78 -2.39 -0.01 2.02 15 25 H 0.04 1.84 8.07 -2.39 -0.02 1.82 15 26 H 0.01 0.45 7.36 -2.39 -0.02 0.43 15 27 H 0.27 14.61 8.31 -92.71 -0.77 13.84 15 28 H 0.16 4.54 7.99 -2.91 -0.02 4.51 15 29 H 0.20 3.55 4.69 -2.91 -0.01 3.54 15 Total: -1.00 -67.20 298.77 2.13 -65.06 By element: Atomic # 1 Polarization: -1.75 SS G_CDS: 1.21 Total: -0.55 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 4.41 Total: 10.54 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -4.06 Total: -91.95 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.06 Total: -28.34 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 35 Polarization: 1.27 SS G_CDS: -1.38 Total: -0.11 kcal Total: -67.20 2.13 -65.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888099752.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.053 kcal (2) G-P(sol) polarization free energy of solvation -67.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds