Wall clock time and date at job start Tue Mar 31 2020 05:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38303 * 119.96610 * 2 1 4 4 C 1.38259 * 120.15484 * 179.97438 * 3 2 1 5 5 C 1.38126 * 120.07459 * 359.74783 * 4 3 2 6 6 C 1.38889 * 119.92410 * 0.48292 * 5 4 3 7 7 N 1.39674 * 120.07679 * 179.79450 * 6 5 4 8 8 C 1.46501 * 120.00237 * 119.64630 * 7 6 5 9 9 C 1.50696 * 109.47028 * 274.99975 * 8 7 6 10 10 H 1.07999 * 120.00074 * 359.97438 * 9 8 7 11 11 C 1.37881 * 120.00079 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99900 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99963 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47021 * 89.99849 * 13 11 9 15 15 H 1.48498 * 109.47107 * 210.00137 * 13 11 9 16 16 H 1.48504 * 109.47054 * 330.00212 * 13 11 9 17 17 S 1.65600 * 119.99752 * 299.63984 * 7 6 5 18 18 O 1.42098 * 106.39889 * 151.11559 * 17 7 6 19 19 O 1.42101 * 106.40366 * 18.19978 * 17 7 6 20 20 C 1.76192 * 107.22201 * 264.65586 * 17 7 6 21 21 C 1.35320 * 126.12887 * 270.00537 * 20 17 7 22 22 C 1.50697 * 126.04015 * 359.97056 * 21 20 17 23 23 C 1.52991 * 117.49999 * 171.37925 * 22 21 20 24 24 C 1.52990 * 117.50469 * 240.00571 * 22 21 20 25 25 C 1.39871 * 107.91967 * 180.24234 * 21 20 17 26 26 N 1.30833 * 108.20280 * 359.55002 * 25 21 20 27 27 N 1.34955 * 126.12797 * 89.97727 * 20 17 7 28 28 C 1.46500 * 126.03553 * 0.02562 * 27 20 17 29 29 C 1.38086 * 119.96384 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47436 * 270.01949 * 1 2 3 31 31 H 1.09004 * 109.47322 * 30.02454 * 1 2 3 32 32 H 1.09005 * 109.47122 * 150.02174 * 1 2 3 33 33 H 1.08003 * 119.92453 * 359.97438 * 3 2 1 34 34 H 1.08008 * 119.96666 * 179.97438 * 4 3 2 35 35 H 1.07999 * 120.03842 * 180.27516 * 5 4 3 36 36 H 1.09003 * 109.47059 * 34.99958 * 8 7 6 37 37 H 1.08995 * 109.47073 * 154.99321 * 8 7 6 38 38 H 0.96994 * 120.00024 * 179.97438 * 12 11 9 39 39 H 1.09006 * 115.55825 * 25.69742 * 22 21 20 40 40 H 1.09008 * 117.50297 * 214.98438 * 23 22 21 41 41 H 1.09000 * 117.50334 * 0.02562 * 23 22 21 42 42 H 1.09000 * 117.49713 * 0.02562 * 24 22 21 43 43 H 1.09004 * 117.50435 * 145.02090 * 24 22 21 44 44 H 1.08000 * 125.89399 * 179.73231 * 25 21 20 45 45 H 1.08990 * 109.47138 * 89.99984 * 28 27 20 46 46 H 1.08998 * 109.46813 * 210.00349 * 28 27 20 47 47 H 1.09002 * 109.47011 * 330.00085 * 28 27 20 48 48 H 1.08005 * 120.03499 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1981 0.0000 4 6 3.5803 1.2027 0.0005 5 6 4.2764 0.0097 0.0063 6 6 3.5860 -1.1954 0.0015 7 7 4.2867 -2.4036 0.0030 8 6 4.1063 -3.3537 1.1035 9 6 5.0248 -2.9860 2.2402 10 1 5.6779 -2.1305 2.1516 11 6 5.0314 -3.7418 3.3933 12 7 4.2357 -4.7834 3.5014 13 14 6.1705 -3.2864 4.8020 14 1 5.4743 -2.3470 5.7176 15 1 6.5511 -4.5132 5.5472 16 1 7.3915 -2.6369 4.2611 17 16 5.3213 -2.7623 -1.2393 18 8 6.3265 -3.6055 -0.6936 19 8 5.6081 -1.5322 -1.8905 20 6 4.4255 -3.7417 -2.3980 21 6 4.3339 -5.0918 -2.3993 22 6 4.9814 -6.0253 -1.4091 23 6 4.5881 -7.5025 -1.4696 24 6 5.9697 -7.0582 -1.9539 25 6 3.5373 -5.4681 -3.4857 26 7 3.1561 -4.3825 -4.1084 27 7 3.7072 -3.2798 -3.4430 28 6 3.5344 -1.8736 -3.8157 29 6 2.1966 -1.1963 0.0005 30 1 -0.3634 0.0003 1.0276 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6559 2.1324 -0.0004 34 1 4.1167 2.1402 0.0001 35 1 5.3564 0.0139 0.0112 36 1 3.0722 -3.3203 1.4465 37 1 4.3417 -4.3600 0.7570 38 1 4.2406 -5.3153 4.3125 39 1 5.1885 -5.5994 -0.4273 40 1 4.5366 -8.0487 -0.5276 41 1 3.8615 -7.7995 -2.2258 42 1 6.1521 -7.0624 -3.0285 43 1 6.8272 -7.3120 -1.3306 44 1 3.2790 -6.4800 -3.7609 45 1 4.3254 -1.5808 -4.5060 46 1 2.5652 -1.7416 -4.2966 47 1 3.5840 -1.2520 -2.9217 48 1 1.6566 -2.1316 0.0005 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888100824.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:12 Heat of formation + Delta-G solvation = 66.200076 kcal Electronic energy + Delta-G solvation = -33958.617132 eV Core-core repulsion = 29722.652447 eV Total energy + Delta-G solvation = -4235.964685 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.140 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.26963 -39.31083 -37.30896 -36.54234 -35.76546 -35.47188 -33.03257 -32.78870 -32.12113 -30.39074 -29.54993 -27.10657 -26.78877 -26.46518 -23.21693 -22.97219 -22.30127 -21.89309 -21.43902 -21.35769 -19.96589 -18.48934 -17.55065 -17.13932 -16.46633 -16.25795 -15.77546 -15.49922 -15.33362 -15.22348 -14.85949 -14.61107 -14.19264 -14.06163 -13.78359 -13.65493 -13.48665 -12.89501 -12.83723 -12.80154 -12.60942 -12.36265 -12.16633 -12.07852 -11.81464 -11.61645 -11.56055 -11.40719 -11.28897 -11.23566 -11.11521 -11.02075 -10.79206 -10.75597 -10.55807 -10.51852 -10.14830 -10.07360 -9.99716 -9.68788 -8.92660 -8.52644 -8.42791 -8.29035 -7.88928 -6.13845 -4.17977 0.52481 1.35326 1.66925 1.68931 2.41593 2.56962 3.28544 3.34450 3.35208 3.41479 3.97116 4.00991 4.19514 4.39108 4.43336 4.62376 5.00456 5.04340 5.07111 5.13218 5.17951 5.19102 5.21180 5.29305 5.31651 5.43931 5.44695 5.51362 5.56364 5.63782 5.70009 5.73707 5.83065 5.89739 5.93560 5.96614 6.14186 6.23015 6.36221 6.37926 6.51869 6.57742 6.68089 6.76404 6.78782 6.86095 7.05005 7.17167 7.19002 7.48213 7.60776 7.82772 8.05716 8.83011 9.47055 10.94683 Molecular weight = 375.14amu Principal moments of inertia in cm(-1) A = 0.006506 B = 0.005897 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4302.722528 B = 4746.820306 C = 7480.360732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.083 4.083 3 C -0.130 4.130 4 C -0.107 4.107 5 C -0.111 4.111 6 C 0.169 3.831 7 N -0.932 5.932 8 C 0.254 3.746 9 C -0.527 4.527 10 H 0.063 0.937 11 C 0.066 3.934 12 N -0.893 5.893 13 Si 0.896 3.104 14 H -0.280 1.280 15 H -0.284 1.284 16 H -0.271 1.271 17 S 2.695 3.305 18 O -0.911 6.911 19 O -0.961 6.961 20 C -0.487 4.487 21 C -0.078 4.078 22 C -0.105 4.105 23 C -0.170 4.170 24 C -0.163 4.163 25 C 0.030 3.970 26 N -0.261 5.261 27 N -0.311 5.311 28 C 0.089 3.911 29 C -0.119 4.119 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.042 0.958 37 H 0.045 0.955 38 H 0.265 0.735 39 H 0.138 0.862 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.189 0.811 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.957 4.127 -11.630 13.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.084 4.084 3 C -0.149 4.149 4 C -0.126 4.126 5 C -0.132 4.132 6 C 0.075 3.925 7 N -0.765 5.765 8 C 0.134 3.866 9 C -0.567 4.567 10 H 0.081 0.919 11 C -0.137 4.137 12 N -0.531 5.531 13 Si 0.724 3.276 14 H -0.206 1.206 15 H -0.210 1.210 16 H -0.196 1.196 17 S 2.780 3.220 18 O -0.900 6.900 19 O -0.951 6.951 20 C -0.693 4.693 21 C -0.092 4.092 22 C -0.124 4.124 23 C -0.207 4.207 24 C -0.201 4.201 25 C -0.154 4.154 26 N -0.086 5.086 27 N -0.096 5.096 28 C -0.052 4.052 29 C -0.141 4.141 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.156 0.844 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.120 0.880 44 H 0.206 0.794 45 H 0.105 0.895 46 H 0.112 0.888 47 H 0.117 0.883 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.811 4.747 -12.638 14.332 hybrid contribution 0.389 -0.633 1.291 1.489 sum -4.422 4.114 -11.347 12.855 Atomic orbital electron populations 1.20754 0.91375 1.02294 1.02315 1.19696 0.95768 0.92715 1.00238 1.20938 0.94165 0.97145 1.02637 1.20924 0.94028 0.97438 1.00174 1.21368 1.00511 0.91521 0.99798 1.17328 0.90619 0.84972 0.99615 1.55468 1.61195 1.24763 1.35044 1.19403 0.98874 0.85860 0.82416 1.21356 1.22469 1.13461 0.99382 0.91889 1.24876 0.95688 0.94698 0.98396 1.69907 1.37955 1.17173 1.28098 0.86511 0.81194 0.78031 0.81882 1.20570 1.20976 1.19572 1.02401 0.73876 0.73373 0.72337 1.93662 1.51709 1.68382 1.76233 1.93538 1.82886 1.42592 1.76079 1.33770 1.16388 1.09005 1.10140 1.19368 1.01100 0.90645 0.98115 1.20788 1.02770 0.89456 0.99396 1.22975 0.98188 0.96120 1.03372 1.22948 0.93640 1.02418 1.01062 1.23873 0.98651 0.98109 0.94797 1.77150 1.18630 0.92980 1.19827 1.47994 1.35614 1.06553 1.19394 1.22238 1.04117 0.74949 1.03850 1.21150 0.93150 0.98063 1.01715 0.91189 0.91808 0.91795 0.86369 0.85908 0.85558 0.94000 0.93690 0.92552 0.84429 0.87908 0.88946 0.89079 0.87997 0.79411 0.89529 0.88768 0.88257 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 36.00 0.36 -0.83 16 2 C -0.08 -1.16 5.88 -104.66 -0.62 -1.78 16 3 C -0.13 -1.69 9.70 -39.55 -0.38 -2.08 16 4 C -0.11 -1.51 10.04 -39.61 -0.40 -1.91 16 5 C -0.11 -1.92 8.62 -39.38 -0.34 -2.26 16 6 C 0.17 3.16 5.24 -83.79 -0.44 2.72 16 7 N -0.93 -19.16 2.83 -59.81 -0.17 -19.33 16 8 C 0.25 6.09 5.01 -5.19 -0.03 6.06 16 9 C -0.53 -14.16 9.36 -34.44 -0.32 -14.48 16 10 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 11 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 12 N -0.89 -24.85 13.29 55.43 0.74 -24.11 16 13 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 S 2.69 53.39 5.43 -107.50 -0.58 52.81 16 18 O -0.91 -20.53 14.93 -57.17 -0.85 -21.38 16 19 O -0.96 -18.45 13.41 -57.17 -0.77 -19.21 16 20 C -0.49 -8.78 7.00 -17.22 -0.12 -8.90 16 21 C -0.08 -1.35 5.75 -105.05 -0.60 -1.95 16 22 C -0.11 -1.79 5.25 -91.78 -0.48 -2.28 16 23 C -0.17 -2.29 10.02 -26.74 -0.27 -2.56 16 24 C -0.16 -2.31 10.23 -26.74 -0.27 -2.58 16 25 C 0.03 0.45 11.35 -17.37 -0.20 0.26 16 26 N -0.26 -4.21 12.58 30.62 0.39 -3.83 16 27 N -0.31 -5.10 4.01 -67.26 -0.27 -5.37 16 28 C 0.09 1.17 10.54 59.85 0.63 1.81 16 29 C -0.12 -1.98 9.06 -39.38 -0.36 -2.34 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 32 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 33 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 35 H 0.13 2.23 7.54 -52.49 -0.40 1.84 16 36 H 0.04 1.04 7.56 -51.93 -0.39 0.64 16 37 H 0.05 1.11 5.92 -51.93 -0.31 0.81 16 38 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.14 2.78 5.04 -51.93 -0.26 2.52 16 40 H 0.10 1.36 8.14 -51.92 -0.42 0.93 16 41 H 0.09 1.03 6.98 -51.93 -0.36 0.67 16 42 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.19 2.12 7.20 -52.49 -0.38 1.74 16 45 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.10 1.36 6.68 -51.93 -0.35 1.01 16 48 H 0.12 2.03 7.94 -52.48 -0.42 1.62 16 LS Contribution 407.98 15.07 6.15 6.15 Total: -1.00 -31.81 407.98 -10.95 -42.77 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.63 Total: 6.72 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: -3.93 Total: -31.41 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.68 Total: -52.64 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -1.62 Total: -40.59 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 53.39 SS G_CDS: -0.58 Total: 52.81 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.81 -10.95 -42.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888100824.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.969 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds